View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_1 (Length: 991)
Name: NF3048_low_1
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 891; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 891; E-Value: 0
Query Start/End: Original strand, 16 - 991
Target Start/End: Original strand, 2271914 - 2272892
Alignment:
| Q |
16 |
agtaatgacttattatctcaagtttagaatcggtgcaaaaataatgtggtatgtaatgcttttgtatttactggcttcctgcgtttctggtttgatttta |
115 |
Q |
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| T |
2271914 |
agtaatgacttattatctcaagtttagaatcggtgcaaaaataatgtggtatgtaatgcttttgtatttactggcttcctgcgtttctggtttgatttta |
2272013 |
T |
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| Q |
116 |
tgggatgagggctgcttcctggtgttctcggtcgtctatgattttttgcaaactagttttgggcttatttttgctccctgaagccaattgtcctgcaatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272014 |
tgggatgagggctgcttcctggtgttctcggtcgtctatgattttttgcaaactagttttgggcttatttttgctccctgaagccaattgtcctgcaatt |
2272113 |
T |
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| Q |
216 |
ctnnnnnnnnnnnnnnnnnnnnnnagattaatatttgagtattaggaggttgttattactatgtttctttgtactgatttggcgaaaaatgtagactata |
315 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2272114 |
ctgggggtggggggagggttggggagattaatatttgagtattaggaggttgttattactatgtttctttgtactgatttggctaaaaatgtagactata |
2272213 |
T |
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| Q |
316 |
tatgcttcttaaattctcacagttataacactaacattgtatttatgtcaactgttttcaaatacagtggtgtattttgcatcctgatttggctggtgct |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272214 |
tatgcttcttaaattctcacagttataacactaacattgtatttatgtcaactgttttcaaatacagtggtgtattttgcatcctgatttggctggtgct |
2272313 |
T |
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| Q |
416 |
gttgactatgcttgtagtttatcaaattgtactacattgggatatggttcttgtaatggtttgagtcttcttgtgcatttaatatgtattgtcaagtgaa |
515 |
Q |
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| T |
2272314 |
gttgactatgcttgtagtttatcaaattgtactacattgggatatggttcttgtaatggtttgagtcttcttgtgcatttaatatgtattgtcaagtgaa |
2272413 |
T |
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| Q |
516 |
taatcagaaaggattggaattgagacttctctggtttggctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaat |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272414 |
taatcagaaaggattggaattgagacttctctggtttggctattttacagatcatgattcatgatccatcagaaagttttgctcaaggattcacacaaat |
2272513 |
T |
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| Q |
616 |
ccaagaggaatctatctgtttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaa |
715 |
Q |
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| T |
2272514 |
ccaagaggaatctatctgtttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaatgtagaa |
2272613 |
T |
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| Q |
716 |
taatttacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgtttaaggacagacttaatgttcgtgtcca |
815 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2272614 |
taatttacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgcttaaggacagacttaatgttcgtgtcca |
2272713 |
T |
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| Q |
816 |
agacaaagtgaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgtgtgcttcactgcaacattatttattt |
915 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272714 |
agacaaagtgaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttctgtgtgcttcactgcaacattatttattt |
2272813 |
T |
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| Q |
916 |
cctccaaatggacattg---ttttgttccatgtattgcttcccatattttgcttcactgtgttaattgatcaatgtggt |
991 |
Q |
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| T |
2272814 |
cctccaaatggacattgtttttttgttccatgtattgcttcccatattttgcttcactgtgttaattgatcaatgtggt |
2272892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 634 - 708
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
| Q |
634 |
tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa |
708 |
Q |
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|||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |||||| |||||| |
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| T |
40772552 |
tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa |
40772478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 402 - 558
Target Start/End: Original strand, 46353776 - 46353947
Alignment:
| Q |
402 |
atttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatgg---ttcttgtaatggtttgagtctt-------------c |
485 |
Q |
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||||||||||| | |||| ||||| ||||| |||||| |||||||| |||| |||||||| |||||||||||||||||||||| | |
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| T |
46353776 |
atttggctggtagtattgattatgcatgtagcttatcagattgtactgcattaggatatggatcttcttgtaatggtttgagtcttgaagggaatgcttc |
46353875 |
T |
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| Q |
486 |
ttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctat |
558 |
Q |
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|| ||||||||||||||||| ||||||| |||||||| ||||||||| |||| || || || ||||||||||| |
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| T |
46353876 |
ttatgcatttaatatgtattatcaagtgcataatcag-aaggattgggattgtgatttttcaggtttggctat |
46353947 |
T |
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