View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_10 (Length: 450)
Name: NF3048_low_10
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 7 - 434
Target Start/End: Original strand, 42802415 - 42802842
Alignment:
| Q |
7 |
gagatgaagaagaagaatactgatgcatcctcctcctcaatcacaaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccannn |
106 |
Q |
| |
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|||| ||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42802415 |
gagaagaagaagaacaatactgatgcatcctcctcctcgatcacaaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatccaccc |
42802514 |
T |
|
| Q |
107 |
nnnnnnnnnnnnnnnnnttttattattaggtctgtctatgtctatgtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtct |
206 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
42802515 |
cctcccctccccttcctttttattattaggtctgtctatgtccatgtaagtagtaattatctcaaatgtcccaaaatgaggttggcattaagagtagtct |
42802614 |
T |
|
| Q |
207 |
aatcagagctctcaattgaagaatatgtatcttttcagtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagaga |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
42802615 |
aatcagagctctcaattgaagaatatgtatcttttcagtttcaacaatgtaatctaagaatcaaaatgaaaattctatattttcccctccttttaagaga |
42802714 |
T |
|
| Q |
307 |
ttctcttgagtgtaggtttggtatcactatggcgtgtcgcaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaat |
406 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
42802715 |
ttctcttgagtgtaggtttggtatcactatggcgtgtcacaattatggtgatccatcgtgatttttcgaaaaatacacttataacttctgcaaaatcaat |
42802814 |
T |
|
| Q |
407 |
taaaatgagtcaccgtgattctagtata |
434 |
Q |
| |
|
|||||||||||||||||||||||||||| |
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| T |
42802815 |
taaaatgagtcaccgtgattctagtata |
42802842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 139 - 430
Target Start/End: Complemental strand, 25514990 - 25514684
Alignment:
| Q |
139 |
tgtctatgtctatgtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtcta-----atcagagctctcaattgaagaatatg |
233 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| ||| ||||||||||||||||| |||| |
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| T |
25514990 |
tgtctatgtctatgtaagtagtaattatctcaaatgtcccaagatgaggtcggcattaagagtagtctagtctaatccgagctctcaattgaagagtatg |
25514891 |
T |
|
| Q |
234 |
tatctt------ttcagtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagagattctcttgagtgtaggt---- |
323 |
Q |
| |
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|||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| || |
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| T |
25514890 |
tatcttagtattttcagtttcaagaatgtaatctaagaatcaaaatgaaaattctatattttcccctccttttaagagattctcttaagtgtatgtatgc |
25514791 |
T |
|
| Q |
324 |
ttggtatcactatggcgtgtcgcaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtg |
423 |
Q |
| |
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|||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25514790 |
atggtatcactgtggtgtgtcacaatcatggtgatccatcgtgatttttcaaaaaatacacttataacttctgcaaaatcaattaaaatgagtcaccgtg |
25514691 |
T |
|
| Q |
424 |
attctag |
430 |
Q |
| |
|
||||||| |
|
|
| T |
25514690 |
attctag |
25514684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 124 - 430
Target Start/End: Original strand, 25520363 - 25520691
Alignment:
| Q |
124 |
ttttattattaggtctgtctatgtctat------gtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagta-----gtctaatcag |
212 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| | |
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|
| T |
25520363 |
ttttattattaggtctgtctatgtctatttctatgtaagtagtaattatctcaaatgtcctaaaatgaggtcggcattaagagtaatctagtctaatctg |
25520462 |
T |
|
| Q |
213 |
agctctcaattgaagaatatgtatctt------ttcagtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctccttttaagaga |
306 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
25520463 |
agctctcaattgaagggtatgtatcttagtattttcagtttcaagaatgtaatctaagaatcaaaatgaaaattctatatttttccctccttttaagaga |
25520562 |
T |
|
| Q |
307 |
ttctcttgagtgtaggtttg----gtatcactatggcgtgtcgcaatcatggtgatccatcgtgatttttcaaaa-aatacacttataacttctgcaaaa |
401 |
Q |
| |
|
||||||| ||| || || || |||||||| ||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
25520563 |
ttctcttaagtatatgtatgcatggtatcactgtggtgtgtcacaatcatggtgatccatcgtgatttttcaaaaaaatacacttataacttctgcaaaa |
25520662 |
T |
|
| Q |
402 |
tcaattaaaatgagtcaccgtgattctag |
430 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
25520663 |
tcaattaaaatgagtcaccgtgattctag |
25520691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 404
Target Start/End: Complemental strand, 28307914 - 28307856
Alignment:
| Q |
347 |
aatcatggtgatccatcgtgatttttcaaaaaataca-cttataacttctgcaaaatca |
404 |
Q |
| |
|
|||||| ||||||||||||||||||| ||||| |||| ||||||||||| |||||||| |
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|
| T |
28307914 |
aatcatagtgatccatcgtgattttttaaaaactacattttataacttctacaaaatca |
28307856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 143 - 300
Target Start/End: Original strand, 49093 - 49267
Alignment:
| Q |
143 |
tatgtctatgtaagtagtaattatctcaaatgtctcaaaatgaggtcggcattaagagtagtctaatcagag----ctctcaattgaagaatatgtatc- |
237 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||| |
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|
| T |
49093 |
tatgtttatgtaagtagtaattatcttaaatgtcccaaaatgaggtcggcattaagagtagtctaatctgagctctctctcaattgaagagtatgtatct |
49192 |
T |
|
| Q |
238 |
--------ttttc----agtttcaacaatgtgatctaagaatcaaaatgaaaattctatattttaccctcctttt |
300 |
Q |
| |
|
||||| | |||||||||||| ||||||||||| ||||||||||||| |||||| | |||||||| |
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|
| T |
49193 |
tagtattattttcggttaatttcaacaatgtaatctaagaatccaaatgaaaattctttattttccgctcctttt |
49267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 51 - 100
Target Start/End: Original strand, 48972 - 49021
Alignment:
| Q |
51 |
aaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaat |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
48972 |
aaatgaagacagcagtaagtcactcccatcctcttttggaaatgcttaat |
49021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 25851757 - 25851705
Alignment:
| Q |
51 |
aaatgaagacagcagtaactcactcccatcctcttttggaaatgcttaatcca |
103 |
Q |
| |
|
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
25851757 |
aaatgaagacatcagtaactcactcccttcctcttttggaaatgcttaatcca |
25851705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 25851612 - 25851651
Alignment:
| Q |
55 |
gaagacagcagtaactcactcccatcctcttttggaaatg |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25851612 |
gaagacagcagtaactcactcccatcctcttttggaaatg |
25851651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 12 - 57
Target Start/End: Complemental strand, 25851817 - 25851772
Alignment:
| Q |
12 |
gaagaagaagaatactgatgcatcctcctcctcaatcacaaatgaa |
57 |
Q |
| |
|
||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
25851817 |
gaagaagaacaatactgatgcatcctcctcctaaatcacaaatgaa |
25851772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 12 - 57
Target Start/End: Original strand, 25851548 - 25851593
Alignment:
| Q |
12 |
gaagaagaagaatactgatgcatcctcctcctcaatcacaaatgaa |
57 |
Q |
| |
|
||||||||| |||| ||||||||| ||||||||||||||| ||||| |
|
|
| T |
25851548 |
gaagaagaacaatattgatgcatcatcctcctcaatcacagatgaa |
25851593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 386
Target Start/End: Complemental strand, 5277048 - 5277009
Alignment:
| Q |
347 |
aatcatggtgatccatcgtgatttttcaaaaaatacactt |
386 |
Q |
| |
|
||||||||||||| ||| |||||||||||||||||||||| |
|
|
| T |
5277048 |
aatcatggtgatctatcatgatttttcaaaaaatacactt |
5277009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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