View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_12 (Length: 443)
Name: NF3048_low_12
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Original strand, 19620096 - 19620529
Alignment:
| Q |
1 |
tatattatactagttaagtagctccctcctt-------ttcccttttcccttttcatttggaatcatgagagttcataaatcaatggttttaatcattat |
93 |
Q |
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| T |
19620096 |
tatattaaactagttaagtagctccctccttttcccttttcccttttcccttttcatttggaatcatgagagttcataaatctatggttttaatcattat |
19620195 |
T |
|
| Q |
94 |
gttccttcttcttttaatactattagtactccatatttcaagttccaagcacatggaagaaagaacaagagtcaagttccccttatcatttccacaatct |
193 |
Q |
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| T |
19620196 |
gttccttcttcttttaatactactagtactccatctttcaagttccaggcacatggaagaaagaacaagagtcaagttccccttatcatttccacaatct |
19620295 |
T |
|
| Q |
194 |
tttgaagaattcaaagataaaaaggtcagtagatttcaaattgtttcacatacatctactccagggggaccaaatccacttcataattgaatcaaactag |
293 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19620296 |
tttgaagaattcaaagataaaaaggtcagtagatttcaaattgtttcacatacatctactccagggggaccaaatccacttcataattgaatcaaactag |
19620395 |
T |
|
| Q |
294 |
gcatataattgattatgaagtatctctagtgaaagtagatctggtactatatagctagaagatgtagtgatttcttacaagtggaatcgatgcctaattg |
393 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19620396 |
acatataattgattatgaagtatctctagtgaaagtagatctggtactatatagctagaagatgtagtgatttcttacaagtggaatcgatgcctaattg |
19620495 |
T |
|
| Q |
394 |
aggaacttcaagaagtatatggcgaccaagttat |
427 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
19620496 |
aggaacttcaagaagtatatggcgaccaagttat |
19620529 |
T |
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