View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_14 (Length: 432)
Name: NF3048_low_14
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 12 - 422
Target Start/End: Complemental strand, 8691016 - 8690606
Alignment:
| Q |
12 |
tgttacaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatca |
111 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8691016 |
tgttaaaccttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatca |
8690917 |
T |
|
| Q |
112 |
aaaacattagaaagattgcatttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctata |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8690916 |
aaaacattagaaagattgcatttttgtgagaaaataatgatggggtttgttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctata |
8690817 |
T |
|
| Q |
212 |
acattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaacgt |
311 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8690816 |
acattgttgacaatggaatcattaccaagtaacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaacgt |
8690717 |
T |
|
| Q |
312 |
catagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgcnnnnnnngtagcaacaaaatgagacaaagagagactttctaa |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
8690716 |
catagttatgaggaaatgagtttgtcattgcttgttttgttttgaaaatgtgttttgctttttttgtagcaacaaaatgagacaaagagagactttctaa |
8690617 |
T |
|
| Q |
412 |
taccacctatg |
422 |
Q |
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||||||||||| |
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| T |
8690616 |
taccacctatg |
8690606 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 49 - 309
Target Start/End: Complemental strand, 8705259 - 8704991
Alignment:
| Q |
49 |
aggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaaaacattagaaagattgcatttttgtgagaaaataa |
148 |
Q |
| |
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|||||| || ||||||||||| || |||| ||||||| | ||| |||||||||||||| |||||||||| |||| |||||||||| ||||||||||| |
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| T |
8705259 |
aggacacaaaaaaaaccattctgggtcatctgattttacaaccgaaaaagctgaaaaagatgaaaaacattaaaaaggttgcatttttatgagaaaataa |
8705160 |
T |
|
| Q |
149 |
tgatggg---gtttgtt-----acctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaag |
240 |
Q |
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||| ||| ||||||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8705159 |
tgaagggtttgtttgtttttttacctggtaagtcccaaggttcatagttgcatacatcaacttcagctataacattgtttacaatggaatcattaccaag |
8705060 |
T |
|
| Q |
241 |
taacnnnnnnnngagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaac |
309 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8705059 |
taacttttttttgagatagtggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaac |
8704991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 8740366 - 8740138
Alignment:
| Q |
18 |
accttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaaaaca |
117 |
Q |
| |
|
|||||||||| ||||| || ||||| || |||||| |||||||||||||| | |||| |||||||||| |||| ||||||||||||| ||||||| |
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| T |
8740366 |
accttttactctttgcatacttgtattcaataggacacaagaaaaaccattcttggtcatcagattttatcactgaacgagctgaaaaagatgaaaaaca |
8740267 |
T |
|
| Q |
118 |
ttagaaagattgcatttttgtgagaaaataatgatggggtttgtt--------acctggtaaatcccaaggttcgaacttgcatacatcaacttcagcta |
209 |
Q |
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||| ||| ||| ||| | | ||||||||||||| ||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||| |
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| T |
8740266 |
ttaacaaggttgaattactttaagaaaataatgatagggtttgtttggtttttacctggtaagtcccaaggttcgtacttgcatacatcaacttcagcta |
8740167 |
T |
|
| Q |
210 |
taacattgttgacaatggaatcattacca |
238 |
Q |
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|||||||||| |||||||||||||||||| |
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| T |
8740166 |
taacattgtttacaatggaatcattacca |
8740138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 161 - 308
Target Start/End: Complemental strand, 8722216 - 8722069
Alignment:
| Q |
161 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagt |
260 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||| |||| ||||| ||||||||| |||||||| |
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| T |
8722216 |
ttacctggtaaatcccaaggtttaaacttgaatacatcaacttcagctatgacattgttaacaaactcttcattgccaagtaacttgtttctgagatagt |
8722117 |
T |
|
| Q |
261 |
ggtttacaagctcttcatctgttggtcggaatctgaatccaacaggaa |
308 |
Q |
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|||||||||||||| ||||||||| ||||||||||||||||||||| |
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| T |
8722116 |
agtttacaagctcttgatctgttggatggaatctgaatccaacaggaa |
8722069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 161 - 240
Target Start/End: Complemental strand, 8723561 - 8723482
Alignment:
| Q |
161 |
ttacctggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaag |
240 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| | |||||||||||||||||||||||| ||||||| ||||||||||| |
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| T |
8723561 |
ttacctggtaattcccatggttcgaacttgcgaatatcaacttcagctataacattgtttacaatggcgtcattaccaag |
8723482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 166 - 308
Target Start/End: Complemental strand, 8738643 - 8738501
Alignment:
| Q |
166 |
tggtaaatcccaaggttcgaacttgcatacatcaacttcagctataacattgttgacaatggaatcattaccaagtaacnnnnnnnngagatagtggttt |
265 |
Q |
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|||||| |||||||| || ||| |||| ||||||||||| ||||| |||||||| ||| |||| |||||||||||||| ||| ||||| || |
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| T |
8738643 |
tggtaattcccaaggctcaaacctgcaaacatcaacttctgctatgacattgttaacatgggaaacattaccaagtaacttgttcttgaggtagtgatta |
8738544 |
T |
|
| Q |
266 |
acaagctcttcatctgttggtcggaatctgaatccaacaggaa |
308 |
Q |
| |
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|| || ||||||| ||||||||||||||||||||| ||||||| |
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| T |
8738543 |
actagttcttcatttgttggtcggaatctgaatccgacaggaa |
8738501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 135
Target Start/End: Original strand, 14372437 - 14372554
Alignment:
| Q |
18 |
accttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaagatcaaaaaca |
117 |
Q |
| |
|
|||||||||| ||||| || |||||||| |||||| |||||||||||||| || |||| ||||||| || |||||||||||||||||| || |||| |
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|
| T |
14372437 |
accttttactctttgcatacttgtaatcaataggacacaagaaaaaccattctgggtcatctgattttaccacggaacaagctgaaaaagatgaagaaca |
14372536 |
T |
|
| Q |
118 |
ttagaaagattgcatttt |
135 |
Q |
| |
|
||| |||| ||||||||| |
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| T |
14372537 |
ttaaaaaggttgcatttt |
14372554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 21 - 108
Target Start/End: Complemental strand, 8738816 - 8738729
Alignment:
| Q |
21 |
ttttactatttgcgtatttgtaatcgcgaggacaaaagaaaaaccattcgggatcattggattttatcaaagaacaagctgaaaaaga |
108 |
Q |
| |
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||||||| |||||||| |||||||| | |||||| |||||||||||||| || |||| |||||||| | |||| |||||| ||||| |
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| T |
8738816 |
ttttactctttgcgtacttgtaatcacaaggacacaagaaaaaccattccgggtcatgtgattttattatcgaacgagctgacaaaga |
8738729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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