View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_16 (Length: 412)
Name: NF3048_low_16
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 359; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 9 - 394
Target Start/End: Complemental strand, 36284790 - 36284407
Alignment:
| Q |
9 |
acatcatcaacagaaattcacctaattcaaaacaatgaaaattaacatatagattatagaatcataaaaaatcaataacattgaaggagttgcgccataa |
108 |
Q |
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| T |
36284790 |
acatcatcaacagaaattcacctaattcaaaacaatgaaaattaacatatagattatagaatcataaaaaatcaataacattgaaggagtcgcgccataa |
36284691 |
T |
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| Q |
109 |
agagacaacaagacacattattttgttgtccccaatgcaattttacaacaattcataagcgtgcgacatctagaaatcttaggacatccatatccgaatg |
208 |
Q |
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| T |
36284690 |
agagacaacaagacacgttattttgttgtccctaatgcaattttacaacaattcataagcgtgcgacatctagaaatcttaggacatccatatccgaatg |
36284591 |
T |
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| Q |
209 |
gataaaaatagaactaaattcatacacacacattaaatctacacaagcttaaactcgttaagtgtctaaaaatagataaggtagtaatccataccatcaa |
308 |
Q |
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| T |
36284590 |
gataaaaatagaactaaattcataca--cacattaaatctacacaagcttaaactcgttaagtgtctaaaaatagataaggaagtaatccataccatcaa |
36284493 |
T |
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| Q |
309 |
ggcaacttcgaagcacataatcctgttatcttttgaggcttttggcaaggaacataattccgacacagcatctcttgcctcgcttg |
394 |
Q |
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| T |
36284492 |
ggcaacttcgaagcacataatcctgttatcttttgaggcttttggcaaggaacataattccgacacagcatctcttgcctcgcttg |
36284407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 329 - 394
Target Start/End: Complemental strand, 34555339 - 34555274
Alignment:
| Q |
329 |
tcctgttatcttttgaggcttttggcaaggaacataattccgacacagcatctcttgcctcgcttg |
394 |
Q |
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| T |
34555339 |
tcctgttatcttttgaggctcttggcaaggaagataattccaacacagcatcacttgtctcgcttg |
34555274 |
T |
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