View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_17 (Length: 406)
Name: NF3048_low_17
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 341; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 12 - 384
Target Start/End: Original strand, 660809 - 661181
Alignment:
| Q |
12 |
acagacgaagggctcttcaaagcagactctggagtgttcttaggagatatggttagatcaaattctgataaaagctgggtcttgtggccttcagatgtag |
111 |
Q |
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| T |
660809 |
acagacgaagggctcttcaaagcagactctggagtgtttttaggagatatggttagatcaaattctgataaaagctggttcttgtgcccttcagatgtag |
660908 |
T |
|
| Q |
112 |
ttgttttaggtggtgtgattggactggctgactttactgggtcatgtggttcttcattggatagtagaacatagtcacttgacttaggacaagtttcttc |
211 |
Q |
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| T |
660909 |
ttgttttaggtggtgtgattggagtggctgactttactgggtcatttggttcttcattggatagtagaacatagtcacttgacttaggacaagtttcttc |
661008 |
T |
|
| Q |
212 |
attgtctagtagcattttgcactctgttctaggtatggccataacccttcttcggatggaaaatggagtctttgatgttgtaacagaactgcgtttattc |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
661009 |
attgtctagtagcattttgcactctgttctaggtatggccataacccttcttcggatggaaaatggagtctttgatgttgtaacagaactgcgtttattc |
661108 |
T |
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| Q |
312 |
catatatggatctaaaaatgcaaaattgggggaagttacaattctgaagaagaagaataacttgaggcagcat |
384 |
Q |
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|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
661109 |
catatatggatctaaaaaggaaaaattgggggaagttacaattctgaagaagaagaaaaacttgaggcagcat |
661181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 12 - 384
Target Start/End: Complemental strand, 911139 - 910767
Alignment:
| Q |
12 |
acagacgaagggctcttcaaagcagactctggagtgttcttaggagatatggttagatcaaattctgataaaagctgggtcttgtggccttcagatgtag |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |
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| T |
911139 |
acagacgaagggctcttcaaagcagactctggagtgtttttaggagatatggttagatcaaattctgatgaaagctggttcttgtggccttcagatgtag |
911040 |
T |
|
| Q |
112 |
ttgttttaggtggtgtgattggactggctgactttactgggtcatgtggttcttcattggatagtagaacatagtcacttgacttaggacaagtttcttc |
211 |
Q |
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|||||||||||||||| |||||| ||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
911039 |
ttgttttaggtggtgtaattggagtggctgactttactgggtcctgtggttcttcattggataatagaccatagtcacttgacttaggacaagtttcttc |
910940 |
T |
|
| Q |
212 |
attgtctagtagcattttgcactctgttctaggtatggccataacccttcttcggatggaaaatggagtctttgatgttgtaacagaactgcgtttattc |
311 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| | |||| |||||||||||||| |
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| T |
910939 |
attgtctagtagcattttgcactctgttctacgaatggccataacccttcttcggatggaaaatggagtctttgttgtggaaacaaaactgcgtttattc |
910840 |
T |
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| Q |
312 |
catatatggatctaaaaatgcaaaattgggggaagttacaattctgaagaagaagaataacttgaggcagcat |
384 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
910839 |
catatccggatctaaaaatgcaaaattggggaaagttacaattctgaagaagaagaaaaacttgaggtagcat |
910767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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