View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_18 (Length: 393)
Name: NF3048_low_18
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 119 - 375
Target Start/End: Original strand, 25330243 - 25330510
Alignment:
| Q |
119 |
aatggaccataatccatcatggtttctttcatagttaaccaccactactaccataacacttcacaaacccaaaaacnnnnnnncgtagaaactaaattaa |
218 |
Q |
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| T |
25330243 |
aatgaaccataatccatcatggtttctttcatagttaaccaccactactaccataacacttcacaaacccaaaaactttttttcgtagaaactaaattag |
25330342 |
T |
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| Q |
219 |
tccatctaaattgaaaccagagagaaccacaaactcaaaaactacttgatacataataagaaactaagaagattgaa-----------ttgtgactcttc |
307 |
Q |
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| T |
25330343 |
tccacctaaattgaaaccagagagaaccacaaactcaaaaactacgtgatacataataagaaactaagaagattgaatctttttttttttgtgactcttc |
25330442 |
T |
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| Q |
308 |
aacttatggcttctattgctactttcttcaacaaattttactatgttttgatcctcattgtccacctt |
375 |
Q |
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| T |
25330443 |
aacttatggctactattgctactttcttcaacaaattttactatgttttgatcctcattgtccacctt |
25330510 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 204 - 244
Target Start/End: Complemental strand, 13215199 - 13215159
Alignment:
| Q |
204 |
tagaaactaaattaatccatctaaattgaaaccagagagaa |
244 |
Q |
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| T |
13215199 |
tagaaactaaattagtccatctaaattgaagccagggagaa |
13215159 |
T |
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