View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_2 (Length: 729)
Name: NF3048_low_2
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_2 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 660; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 660; E-Value: 0
Query Start/End: Original strand, 14 - 729
Target Start/End: Original strand, 46808350 - 46809065
Alignment:
| Q |
14 |
cagagacctacacgcgaaggtcgttgggaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaacgagagaaagaggagcgac |
113 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46808350 |
cagagacctacacgcgaaggtcgttggaaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaacgtgagaaagaggagcgac |
46808449 |
T |
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| Q |
114 |
aaaaacatcaacctggacgtgaaagagagaaatgggagaaacgagaggatgaagagtggagaggtcgccaacgtcatgaagatccagatgagagggcgag |
213 |
Q |
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| T |
46808450 |
aaaaacatcaacctggacgtgaaagggagaaatgggagaaacgagaagatgaagagtggagaggtcgccaacgtcatgaagatccagatgagagggcgag |
46808549 |
T |
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| Q |
214 |
gttgaggcatagagaggagagaaggaaaaaggaagaagaacatcagaaaggggatagaccttcacgcacaccttcacgccgtgagcgtggagaggaggaa |
313 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
46808550 |
gttgaggcatagagaggagagaaggcaaaaggaagaagaacatcagaaaggggatagaccttcacgcacaccttcacgtcgtgagcgtggagaggaggaa |
46808649 |
T |
|
| Q |
314 |
gaaggttcttctgagtcagaaggaagaagaaacccttttttgttcaggtctaacaggttccaaacactctttgagaacgaaaatggtcacattcgtctca |
413 |
Q |
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| T |
46808650 |
gaaggttcttcagagtcagaaggaagaagaaacccttttttgttcaggtctaacaggttccaaacactctttgagaacgaaaatggtcacattcgtctca |
46808749 |
T |
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| Q |
414 |
tccaaaggtttgacaaacgttcaaacttatttgaaaatttaaaaaactaccgtcttttggagtacagagcaaaaccccacaccatcttcctcccccacca |
513 |
Q |
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| T |
46808750 |
tccaaaggtttgacaaacgttcaaacttatttcaaaatttaaaaaactaccgtcttttggagtacagagccaaaccccacaccatcttcctcccccacca |
46808849 |
T |
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| Q |
514 |
cactgatgccgacttcatccttgtagtccttagtggtacgtaattattttattatgttacattactataacatcttgcattgttggaagaatttgagttc |
613 |
Q |
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| T |
46808850 |
cactgatgccgactttatccttgtagtcctcagtggtgcgtaattattttattatgttatattactataacatcttgcattgttggaagaatttgagttc |
46808949 |
T |
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| Q |
614 |
aacatccattaatagtagtttttcttcttcattttacatacataactaatttgtttgttattatatgtgtatgcagggaaagccatacttactgtgttaa |
713 |
Q |
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| T |
46808950 |
aacatccattaatggtagtttttcttcttcattttacatacataactaatttgtttgttattatatgtgtatgcagggaaagccatacttactgtgttaa |
46809049 |
T |
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| Q |
714 |
attccaacaatagaaa |
729 |
Q |
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| T |
46809050 |
attccaacaatagaaa |
46809065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 94
Target Start/End: Original strand, 46808118 - 46808196
Alignment:
| Q |
16 |
gagacctacacgcgaaggtcgttgggaaggccaagaacaacgccctgaacaatggagaccttcacgtggaaaggaggaa |
94 |
Q |
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| T |
46808118 |
gagacctccacgtggaggtcgtcaagaaggccaagaacaacgccctggacaatggagaccttcacatgaaagggaggaa |
46808196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 1e-33; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 362 - 563
Target Start/End: Original strand, 30285199 - 30285400
Alignment:
| Q |
362 |
tctaacaggttccaaacactctttgagaacgaaaatggtcacattcgtctcatccaaaggtttgacaaacgttcaaacttatttgaaaatttaaaaaact |
461 |
Q |
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| T |
30285199 |
tctaacaggtttcaaactctttttgagaatgaaaatggtcacattcgtctcctccaaaggtttgacaaacgttccaaaatatttgaaaatcttcaaaact |
30285298 |
T |
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| Q |
462 |
accgtcttttggagtacagagcaaaaccccacaccatcttcctcccccaccacactgatgccgacttcatccttgtagtccttagtggtacgtaattatt |
561 |
Q |
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| T |
30285299 |
accgactcttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgacttcattcttgtagtcgttagtggtaattaattatt |
30285398 |
T |
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| Q |
562 |
tt |
563 |
Q |
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| T |
30285399 |
tt |
30285400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 362 - 551
Target Start/End: Original strand, 30313706 - 30313895
Alignment:
| Q |
362 |
tctaacaggttccaaacactctttgagaacgaaaatggtcacattcgtctcatccaaaggtttgacaaacgttcaaacttatttgaaaatttaaaaaact |
461 |
Q |
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| T |
30313706 |
tctaacaggtttcaaactctttttgagaacgaaaatggtcacattcggcttctccaaaggtttgacaaacgttccaaaatatttgagaatctccaaaact |
30313805 |
T |
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| Q |
462 |
accgtcttttggagtacagagcaaaaccccacaccatcttcctcccccaccacactgatgccgacttcatccttgtagtccttagtggta |
551 |
Q |
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| T |
30313806 |
atcgacttttggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgacttcattcttgcagtccttagtggta |
30313895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 371 - 551
Target Start/End: Original strand, 30297665 - 30297845
Alignment:
| Q |
371 |
ttccaaacactctttgagaacgaaaatggtcacattcgtctcatccaaaggtttgacaaacgttcaaacttatttgaaaatttaaaaaactaccgtcttt |
470 |
Q |
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| T |
30297665 |
ttccaaactctttttgagaacgaaaatggtcacattcgtctcctccaaaggtttgacaaacgttccaaaatatttgagaatcttcaaaactatcgccttt |
30297764 |
T |
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| Q |
471 |
tggagtacagagcaaaaccccacaccatcttcctcccccaccacactgatgccgacttcatccttgtagtccttagtggta |
551 |
Q |
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| T |
30297765 |
tggaatatcactccaaacctcacactctctttcttccacaacacaatgatgctgacttcatccttgcagtgcttagtggta |
30297845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 371 - 551
Target Start/End: Original strand, 30302851 - 30303031
Alignment:
| Q |
371 |
ttccaaacactctttgagaacgaaaatggtcacattcgtctcatccaaaggtttgacaaacgttcaaacttatttgaaaatttaaaaaactaccgtcttt |
470 |
Q |
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| T |
30302851 |
ttccaaactctttttgaaaatgaaaatggtcacattcgtctccttcaaaggttcgacaaacgttcaaaaatatttgagaatctccaaaactatcgccttt |
30302950 |
T |
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| Q |
471 |
tggagtacagagcaaaaccccacaccatcttcctcccccaccacactgatgccgacttcatccttgtagtccttagtggta |
551 |
Q |
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| T |
30302951 |
tggaataccactccaaacctcacactctctttcttccacaacacaatgatgctgacttcatccttgcagtccttagtggta |
30303031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 371 - 551
Target Start/End: Original strand, 30290165 - 30290345
Alignment:
| Q |
371 |
ttccaaacactctttgagaacgaaaatggtcacattcgtctcatccaaaggtttgacaaacgttcaaacttatttgaaaatttaaaaaactaccgtcttt |
470 |
Q |
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| T |
30290165 |
ttccaaactctttttgaaaacgaaaatggtcacattcgtctccttcaaagattcgacaaacgctccaaaatatttgaaaatctccaaaactaccgtcttt |
30290264 |
T |
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| Q |
471 |
tggagtacagagcaaaaccccacaccatcttcctcccccaccacactgatgccgacttcatccttgtagtccttagtggta |
551 |
Q |
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|||| || | ||||| |||||| |||| || || || |||| |||||| ||||| ||||||| ||| |||||||||| |
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| T |
30290265 |
tggaatatcactccaaacctcacaccctctttcttccacaacacaatgatgctgactttatccttgcagtgcttagtggta |
30290345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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