View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3048_low_21 (Length: 384)

Name: NF3048_low_21
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3048_low_21
NF3048_low_21
[»] chr2 (4 HSPs)
chr2 (11-199)||(45622936-45623111)
chr2 (219-282)||(45623235-45623296)
chr2 (222-275)||(9809470-9809522)
chr2 (219-275)||(16248453-16248507)
[»] chr8 (2 HSPs)
chr8 (219-282)||(7935038-7935101)
chr8 (219-282)||(34578582-34578645)
[»] chr7 (1 HSPs)
chr7 (219-266)||(27128904-27128951)
[»] chr4 (1 HSPs)
chr4 (219-275)||(31888821-31888875)


Alignment Details
Target: chr2 (Bit Score: 145; Significance: 3e-76; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 11 - 199
Target Start/End: Original strand, 45622936 - 45623111
Alignment:
Q  11 acatcatcatgcgaccagagtctggtgaaagggccgtcgaagtgaagcaacgaaaggacggtggcagccaggtcataattgctctttcatgttggtagta 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45622936 acatcatcatgcgaccagagtctggtgaaagggccgtcgaagtgaagcaacgaaaggacggtggcagccaggtcataattgctctttcatgttggtagta 45623035  T
Q  111 aaatatataataattaattagctttgtatattagctttgtcaatattattttttactatagtatatactaccgtataaagcatcaccca 199  Q
    ||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45623036 aaatatataataatta-------------attagctttgtcaatattattttttactatagtatatactaccgtataaagcatcaccca 45623111  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 45623235 - 45623296
Alignment:
Q  219 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcct 282  Q
    ||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||    
T  45623235 ttgatctaaaggttgagacaca--gagggaagagaaaattaggggagagagaaaagtctatcct 45623296  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 222 - 275
Target Start/End: Original strand, 9809470 - 9809522
Alignment:
Q  222 atctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagt 275  Q
    |||||||||||||||||||| |||||||||||||||||| ||||| ||||||||    
T  9809470 atctaaaggttgagacacaa-gagggaagagaaaattagaggagagagaaaagt 9809522  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Original strand, 16248453 - 16248507
Alignment:
Q  219 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagt 275  Q
    ||||||||||||||||||| ||  |||||||||||||||||| ||||| ||||||||    
T  16248453 ttgatctaaaggttgagacgca--gagggaagagaaaattagaggagagagaaaagt 16248507  T

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Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 219 - 282
Target Start/End: Complemental strand, 7935101 - 7935038
Alignment:
Q  219 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcct 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  7935101 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagagagaaaagtctatcct 7935038  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 219 - 282
Target Start/End: Original strand, 34578582 - 34578645
Alignment:
Q  219 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagtctatcct 282  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  34578582 ttgatctaaaggttgagacacaaagagggaagagaaaattaagggagagagaaaagtctatcct 34578645  T

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Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 219 - 266
Target Start/End: Complemental strand, 27128951 - 27128904
Alignment:
Q  219 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggaga 266  Q
    |||||||||||||||||||||||||||| ||||||||||||| |||||    
T  27128951 ttgatctaaaggttgagacacaaagaggaaagagaaaattagaggaga 27128904  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 31888875 - 31888821
Alignment:
Q  219 ttgatctaaaggttgagacacaaagagggaagagaaaattaggggagaaagaaaagt 275  Q
    ||||||||||||||||||| ||  |||||||||||||||||| ||||| ||||||||    
T  31888875 ttgatctaaaggttgagacgca--gagggaagagaaaattagaggagagagaaaagt 31888821  T

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