View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_22 (Length: 379)
Name: NF3048_low_22
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 10 - 363
Target Start/End: Original strand, 29810981 - 29811337
Alignment:
| Q |
10 |
gatgaacgaggaacatggaagtccttccacaaaaataagagcatatatgctttcacaagtggcttta--gcaagaatgcggtattcgtaagagaatgggc |
107 |
Q |
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| T |
29810981 |
gatgaacgaggaacatggaagtccttccacaaaaataagagcatttatgctt-cacaagtggctttatagcaagaatgcggtattcgtaagagaatgggc |
29811079 |
T |
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| Q |
108 |
aatatatggttggttgtttcatacttt-ccattatattaatgatgatgtaccaagnnnnnnnnnnnnnnn-cactagttgaccttctagtatcacagctt |
205 |
Q |
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| T |
29811080 |
aatacatggctggttgtttcatacttttccattatattaatgatgatgtaccaagaaaaaagacaaaaaaacactagttgaccttctagtatcacagctt |
29811179 |
T |
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| Q |
206 |
acctatgatatgaactttctaaaaataatggtatctagcaggtgactagtgttttggtgtagttttaagttggtatctagtgtagaacattgtttttaac |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29811180 |
acctatgatatgaactttctaaaaataatggtatctagcaggtgactagagttttggtgtagttttaagttagtatctagtgtagaacattgtttttaac |
29811279 |
T |
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| Q |
306 |
ctaagaggctaacttctcaagaaggtttaagtaatatttcatttggcatagagaatac |
363 |
Q |
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| T |
29811280 |
ctaagaggctaacttctcaagaaggtttaagtaatattttatttggcatagagaatac |
29811337 |
T |
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