View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3048_low_23 (Length: 375)

Name: NF3048_low_23
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3048_low_23
NF3048_low_23
[»] chr1 (3 HSPs)
chr1 (121-362)||(6286410-6286649)
chr1 (5-84)||(6286649-6286728)
chr1 (279-327)||(3950319-3950367)
[»] chr8 (1 HSPs)
chr8 (280-329)||(12964347-12964396)
[»] chr7 (1 HSPs)
chr7 (280-336)||(41851267-41851323)
[»] chr6 (1 HSPs)
chr6 (279-336)||(28067322-28067379)
[»] chr5 (1 HSPs)
chr5 (279-336)||(17250491-17250548)
[»] chr4 (2 HSPs)
chr4 (280-329)||(31455919-31455968)
chr4 (279-327)||(30643616-30643664)
[»] chr3 (1 HSPs)
chr3 (284-336)||(30240878-30240930)
[»] chr2 (2 HSPs)
chr2 (280-328)||(8209311-8209359)
chr2 (279-315)||(28640164-28640200)


Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 121 - 362
Target Start/End: Complemental strand, 6286649 - 6286410
Alignment:
Q  121 ttggacgtgaatggtgataattcatctcctcttatattgggaaggttgtttttacaaacaaccataatcacaattgacgtggatacaaacgggtttcact 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  6286649 ttggacgtgaatggtgataattcatctcctcttatattgggaaggttgtttttacaaacagccataatcacaattgacgtggatacgaacggatttcact 6286550  T
Q  221 tggatgatattatttttggtgataagagagtacattatagatgagagagtgtgtggttgatgaatgattaaaatatattattttgataatagagattgat 320  Q
    ||||||||||||||||||||||||  |||||||||  |||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||    
T  6286549 tggatgatattatttttggtgata--agagtacatactagatgagagagtgtgtgattgatgaatgattaaaatatattattttaatgatagagattgat 6286452  T
Q  321 tgattaaaatagagattgaaacggaatcatcaatgtcataca 362  Q
    | ||||| ||||||||||||||||||||||||||||||||||    
T  6286451 taattaagatagagattgaaacggaatcatcaatgtcataca 6286410  T

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Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 5 - 84
Target Start/End: Complemental strand, 6286728 - 6286649
Alignment:
Q  5 cagcagtgaagaatcaatattgtaacaactaccatagagagaataatcaaaacttccaaaggcctcaatatccttatcat 84  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6286728 cagcagtgaagaatcaatattgtaacaactaccatagagagaataatcaaaacttccaaaggcctcaatatccttatcat 6286649  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 3950319 - 3950367
Alignment:
Q  279 gatgaatgattaaaatatattattttgataatagagattgattgattaa 327  Q
    ||||||||||||||||| ||||||||||| | ||||| | |||||||||    
T  3950319 gatgaatgattaaaataaattattttgatgaaagagaataattgattaa 3950367  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 280 - 329
Target Start/End: Complemental strand, 12964396 - 12964347
Alignment:
Q  280 atgaatgattaaaatatattattttgataatagagattgattgattaaaa 329  Q
    |||||||||||||||| ||||||||||| | ||||| |||||||||||||    
T  12964396 atgaatgattaaaataaattattttgatgaaagagaatgattgattaaaa 12964347  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 280 - 336
Target Start/End: Original strand, 41851267 - 41851323
Alignment:
Q  280 atgaatgattaaaatatattattttgataatagagattgattgattaaaatagagat 336  Q
    |||||||||||||||| |||||||  || | ||||| ||||||||||||||||||||    
T  41851267 atgaatgattaaaataaattatttacattagagagaatgattgattaaaatagagat 41851323  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 336
Target Start/End: Complemental strand, 28067379 - 28067322
Alignment:
Q  279 gatgaatgattaaaatatattattttgataatagagattgattgattaaaatagagat 336  Q
    ||||||||||||||||| ||||||||||| | ||||| |||||| ||| || ||||||    
T  28067379 gatgaatgattaaaataaattattttgatgagagagaatgattggttagaagagagat 28067322  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 336
Target Start/End: Original strand, 17250491 - 17250548
Alignment:
Q  279 gatgaatgattaaaatatattattttgataatagagattgattgattaaaatagagat 336  Q
    |||||||||||||| || ||||||||||| | ||| | |||||||||| |||||||||    
T  17250491 gatgaatgattaaagtaaattattttgatgagagaaaatgattgattagaatagagat 17250548  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 280 - 329
Target Start/End: Original strand, 31455919 - 31455968
Alignment:
Q  280 atgaatgattaaaatatattattttgataatagagattgattgattaaaa 329  Q
    |||||||||||||||| ||||||| ||| | ||||||| |||||||||||    
T  31455919 atgaatgattaaaataaattatttagatgagagagattaattgattaaaa 31455968  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 327
Target Start/End: Original strand, 30643616 - 30643664
Alignment:
Q  279 gatgaatgattaaaatatattattttgataatagagattgattgattaa 327  Q
    ||||||||||||||||| ||||||| ||| | ||||| |||||||||||    
T  30643616 gatgaatgattaaaataaattatttagatgagagagaatgattgattaa 30643664  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 336
Target Start/End: Complemental strand, 30240930 - 30240878
Alignment:
Q  284 atgattaaaatatattattttgataatagagattgattgattaaaatagagat 336  Q
    |||||||||||| ||||||||||| | ||||||| ||||||||| | ||||||    
T  30240930 atgattaaaataaattattttgatgagagagattaattgattaagagagagat 30240878  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 328
Target Start/End: Complemental strand, 8209359 - 8209311
Alignment:
Q  280 atgaatgattaaaatatattattttgataatagagattgattgattaaa 328  Q
    |||||||||||||||| ||||||||||| | ||||| | ||||||||||    
T  8209359 atgaatgattaaaataaattattttgatgagagagaattattgattaaa 8209311  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 315
Target Start/End: Original strand, 28640164 - 28640200
Alignment:
Q  279 gatgaatgattaaaatatattattttgataatagaga 315  Q
    ||||||||||||||||| ||||||||||||| |||||    
T  28640164 gatgaatgattaaaataaattattttgataaaagaga 28640200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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