View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_24 (Length: 337)
Name: NF3048_low_24
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 140 - 211
Target Start/End: Complemental strand, 31395113 - 31395042
Alignment:
| Q |
140 |
acatagtccttggagatttctttccactttccgtctttgccgcctacaagtcccttcaagaaacgcctacaa |
211 |
Q |
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| T |
31395113 |
acatagtccttagagatttctttccactttccgtctttgccgtctacaagtcccttcaagaaacgcctacaa |
31395042 |
T |
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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 31394987 - 31394919
Alignment:
| Q |
268 |
atataaaaagatatataattcaaactaagtaaacgataaacaatg-aaaagaactcacatgtgttcatc |
335 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||| |
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| T |
31394987 |
atataaaaagatatataattcaaactaagtaaacaataaacaatgaaaaagaactaacatgtgttcatc |
31394919 |
T |
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