View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3048_low_25 (Length: 332)
Name: NF3048_low_25
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_25 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 77 - 321
Target Start/End: Complemental strand, 39677347 - 39677105
Alignment:
| Q |
77 |
gtgttcagtcttttgtatcaagttattatcaagaagatttatagttcttctnnnnnnnnttcatccttttatctaacatcccacaacttcaacatggtat |
176 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39677347 |
gtgttcagtcttttgtatcaagttattatgaagaagatttatagttct---aaaaaatattcatccttttaactaacatcccacaacttcaacatggtat |
39677251 |
T |
|
| Q |
177 |
ccagaccctgatttgatcctccttgatttgtactgtattattcctgccgtgctctccaaaattt-ggacaattttatagttgtatacttgtatttgggaa |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
39677250 |
ccagaccctgatttgatcctccttgatttgtactgtattattcctgccgtgctctccaaaatttgggacaattttatagttgtatacttgtgtttgggaa |
39677151 |
T |
|
| Q |
276 |
cctctgtcgatatacaaaagcccaaagtttctaatctaacattcat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39677150 |
cctctgtcgatatacaaaagcccaaagtttctaatctaacattcat |
39677105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 39678211 - 39678153
Alignment:
| Q |
19 |
ttgtttcttaatttccctatctaggactaagtagtgtatcccctaaatatatgagttag |
77 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
39678211 |
ttgtttcttaatttccctatctaggactaagtagtgtatctcctaaatatacgagttag |
39678153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University