View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3048_low_27 (Length: 319)

Name: NF3048_low_27
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3048_low_27
NF3048_low_27
[»] chr2 (14 HSPs)
chr2 (40-245)||(2096034-2096242)
chr2 (96-179)||(41732608-41732691)
chr2 (99-179)||(1043328-1043408)
chr2 (99-179)||(9190317-9190397)
chr2 (122-176)||(1593088-1593142)
chr2 (113-179)||(21613376-21613442)
chr2 (89-158)||(21278634-21278703)
chr2 (127-179)||(36314577-36314629)
chr2 (122-188)||(14160589-14160655)
chr2 (1-41)||(3596318-3596358)
chr2 (1-41)||(23919439-23919479)
chr2 (125-179)||(10585101-10585155)
chr2 (1-39)||(22333843-22333881)
chr2 (138-179)||(5382702-5382743)
[»] chr3 (20 HSPs)
chr3 (39-246)||(22775200-22775411)
chr3 (46-237)||(37224332-37224524)
chr3 (38-245)||(37057456-37057666)
chr3 (40-188)||(26769761-26769910)
chr3 (98-179)||(46823535-46823616)
chr3 (113-176)||(30500936-30500999)
chr3 (113-176)||(35238723-35238786)
chr3 (98-176)||(17653321-17653399)
chr3 (3-39)||(49284892-49284928)
chr3 (113-179)||(52724605-52724671)
chr3 (1-34)||(5173979-5174012)
chr3 (1-38)||(11995199-11995236)
chr3 (1-34)||(19222555-19222588)
chr3 (1-34)||(24303458-24303491)
chr3 (1-34)||(54769799-54769832)
chr3 (198-242)||(26770304-26770348)
chr3 (1-41)||(32401558-32401598)
chr3 (1-41)||(35849549-35849589)
chr3 (213-245)||(37224298-37224330)
chr3 (1-41)||(38949742-38949782)
[»] chr6 (10 HSPs)
chr6 (41-244)||(7590437-7590643)
chr6 (122-179)||(3886141-3886198)
chr6 (122-179)||(583316-583373)
chr6 (98-179)||(13703075-13703156)
chr6 (98-176)||(34729509-34729587)
chr6 (98-179)||(29363878-29363959)
chr6 (122-179)||(30386819-30386876)
chr6 (1-41)||(29646510-29646550)
chr6 (114-156)||(5122304-5122346)
chr6 (1-34)||(32620040-32620073)
[»] chr4 (30 HSPs)
chr4 (40-245)||(4608056-4608263)
chr4 (39-242)||(23237457-23237663)
chr4 (46-245)||(27512854-27513056)
chr4 (39-245)||(39606237-39606446)
chr4 (39-245)||(22375836-22376045)
chr4 (39-246)||(18493731-18493943)
chr4 (40-245)||(54508510-54508717)
chr4 (40-188)||(32595039-32595187)
chr4 (41-188)||(34021248-34021396)
chr4 (46-167)||(18502008-18502129)
chr4 (111-179)||(44222958-44223026)
chr4 (98-179)||(13768529-13768610)
chr4 (110-188)||(21733872-21733950)
chr4 (98-175)||(43892856-43892933)
chr4 (98-188)||(20167501-20167591)
chr4 (125-179)||(46721870-46721924)
chr4 (125-188)||(20618748-20618811)
chr4 (125-187)||(8762859-8762921)
chr4 (113-179)||(30226670-30226736)
chr4 (1-34)||(2629647-2629680)
chr4 (1-34)||(2688164-2688197)
chr4 (1-34)||(5326559-5326592)
chr4 (125-186)||(16608608-16608669)
chr4 (98-179)||(32824599-32824680)
chr4 (1-34)||(38228505-38228538)
chr4 (1-34)||(42002374-42002407)
chr4 (1-34)||(42664049-42664082)
chr4 (1-34)||(49264594-49264627)
chr4 (1-34)||(51890865-51890898)
chr4 (1-41)||(46791170-46791210)
[»] chr8 (17 HSPs)
chr8 (44-245)||(33538305-33538509)
chr8 (98-179)||(18606019-18606100)
chr8 (98-179)||(21441927-21442008)
chr8 (98-179)||(4072561-4072642)
chr8 (98-179)||(41323515-41323596)
chr8 (1-34)||(30676273-30676306)
chr8 (1-32)||(36433604-36433635)
chr8 (124-186)||(1233785-1233847)
chr8 (110-176)||(10713855-10713921)
chr8 (110-176)||(30932150-30932216)
chr8 (1-34)||(12770436-12770469)
chr8 (1-34)||(15856475-15856508)
chr8 (1-34)||(43847003-43847036)
chr8 (1-41)||(481079-481119)
chr8 (1-41)||(2114951-2114991)
chr8 (1-41)||(37981201-37981241)
chr8 (1-41)||(41458363-41458403)
[»] chr5 (16 HSPs)
chr5 (46-245)||(39570764-39570965)
chr5 (46-246)||(12947240-12947445)
chr5 (46-168)||(12933028-12933150)
chr5 (110-188)||(6735903-6735981)
chr5 (48-147)||(42091890-42091989)
chr5 (98-179)||(17769310-17769391)
chr5 (113-179)||(21360905-21360971)
chr5 (90-149)||(42580463-42580522)
chr5 (98-180)||(13517243-13517324)
chr5 (98-179)||(39685662-39685744)
chr5 (1-41)||(24477893-24477933)
chr5 (1-34)||(4068050-4068083)
chr5 (1-34)||(20145533-20145566)
chr5 (4-41)||(29646075-29646112)
chr5 (143-188)||(42092340-42092385)
chr5 (1-41)||(7171796-7171836)
[»] chr1 (31 HSPs)
chr1 (46-245)||(44592518-44592721)
chr1 (47-188)||(36156901-36157042)
chr1 (40-246)||(50099537-50099746)
chr1 (46-179)||(27773554-27773687)
chr1 (40-188)||(50303874-50304023)
chr1 (37-175)||(43022554-43022692)
chr1 (50-188)||(43410929-43411068)
chr1 (98-179)||(7493398-7493479)
chr1 (40-188)||(26632988-26633135)
chr1 (98-179)||(10619794-10619875)
chr1 (81-160)||(29681098-29681177)
chr1 (99-179)||(44429812-44429892)
chr1 (113-176)||(39618450-39618513)
chr1 (81-160)||(48366657-48366736)
chr1 (198-245)||(43022452-43022499)
chr1 (113-179)||(15757407-15757473)
chr1 (1-38)||(7000927-7000964)
chr1 (1-34)||(25036231-25036264)
chr1 (1-34)||(25041443-25041476)
chr1 (1-41)||(26909832-26909872)
chr1 (2-41)||(37280770-37280809)
chr1 (1-34)||(7491829-7491862)
chr1 (1-34)||(11333732-11333765)
chr1 (1-34)||(11491753-11491786)
chr1 (1-34)||(23991233-23991266)
chr1 (1-34)||(47469042-47469075)
chr1 (1-34)||(50119040-50119073)
chr1 (5-41)||(2514571-2514607)
chr1 (1-41)||(16997221-16997261)
chr1 (1-41)||(24875039-24875079)
chr1 (40-76)||(33409366-33409402)
[»] chr7 (25 HSPs)
chr7 (38-246)||(23333243-23333454)
chr7 (40-248)||(27571543-27571753)
chr7 (46-242)||(27098835-27099031)
chr7 (46-242)||(27179272-27179468)
chr7 (40-244)||(33036024-33036230)
chr7 (46-245)||(38892097-38892297)
chr7 (98-179)||(45809973-45810054)
chr7 (82-160)||(5437129-5437207)
chr7 (113-179)||(41532412-41532478)
chr7 (98-176)||(48609439-48609517)
chr7 (81-158)||(11468622-11468699)
chr7 (122-179)||(33335982-33336039)
chr7 (113-176)||(2410955-2411018)
chr7 (125-179)||(83978-84032)
chr7 (98-179)||(758572-758653)
chr7 (98-179)||(46212010-46212091)
chr7 (113-156)||(36558371-36558414)
chr7 (113-159)||(19532360-19532406)
chr7 (1-35)||(41331047-41331081)
chr7 (125-187)||(45855378-45855440)
chr7 (1-34)||(25155609-25155642)
chr7 (1-34)||(38151412-38151445)
chr7 (1-34)||(40518858-40518891)
chr7 (122-178)||(2826749-2826805)
chr7 (1-41)||(22548279-22548319)
[»] scaffold0049 (2 HSPs)
scaffold0049 (122-179)||(46875-46932)
scaffold0049 (98-179)||(15003-15084)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-41)||(28783-28823)


Alignment Details
Target: chr2 (Bit Score: 144; Significance: 1e-75; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 2096242 - 2096034
Alignment:
Q  40 cagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaat 139  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2096242 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaat 2096143  T
Q  140 atatattattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt---ggatagccatagctacccctctcttgtataagcat 236  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||         ||||   || ||||||||||||||||||||||||| ||||||    
T  2096142 atatattattaggggtagctaaacataaaaatatacctacaaattcaataaaatttatttttttggggtagccatagctacccctctcttgtacaagcat 2096043  T
Q  237 tcgcccctg 245  Q
    |||||||||    
T  2096042 tcgcccctg 2096034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 41732608 - 41732691
Alignment:
Q  96 ataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||||  || |||||||| |||||||||||||||||||||||||||| |||||||||| | ||||| | ||||||||    
T  41732608 ataaaaaattatttcaactaaaatctaacttggggtagccaaatatatattattaggggtagctacatataaaaacatacctac 41732691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 1043328 - 1043408
Alignment:
Q  99 aaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    |||||||||  ||| ||||||  ||||||||||||||||||| |||||||| |||||||||||| ||||| ||||||||||    
T  1043328 aaaaattatttcacttaaaattaaacttggggtagccaaataaatattattaggggtagctaaatataaaaatatacctac 1043408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 9190317 - 9190397
Alignment:
Q  99 aaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    |||||||||  ||| ||||||  ||||||||||||||||||| |||||||| |||||||||||| ||||| ||||||||||    
T  9190317 aaaaattatttcacttaaaattaaacttggggtagccaaataaatattattaggggtagctaaatataaaaatatacctac 9190397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 122 - 176
Target Start/End: Original strand, 1593088 - 1593142
Alignment:
Q  122 aacttggggtagccaaatatatattattgggggtagctaaacataaacatatacc 176  Q
    |||||||||||||||||||||||||||| |||||| ||||| ||||| |||||||    
T  1593088 aacttggggtagccaaatatatattattaggggtaactaaatataaaaatatacc 1593142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 21613376 - 21613442
Alignment:
Q  113 ctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||| |||||| |||||||||||||||||||||||| |||||||| ||| ||||  ||||||||||    
T  21613376 ctaaagtcgaacatggggtagccaaatatatattattaggggtagccaaatataataatatacctac 21613442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 158
Target Start/End: Complemental strand, 21278703 - 21278634
Alignment:
Q  89 caaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagc 158  Q
    |||||||| ||||||||||  || |||||||| |||||||||||| |||||| |||||||| ||||||||    
T  21278703 caaagtcagaaaaaattatttcaactaaaatcaaacttggggtagtcaaataaatattattaggggtagc 21278634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 36314577 - 36314629
Alignment:
Q  127 ggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||||||||||||||| |||||| ||||| ||||| ||||||||||    
T  36314577 ggggtagccaaatatatattattaggggtaactaaatataaaaatatacctac 36314629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 122 - 188
Target Start/End: Original strand, 14160589 - 14160655
Alignment:
Q  122 aacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    |||||||||||||||| ||||||||||| |||||||||||  ||| | ||||||||||  |||||||    
T  14160589 aacttggggtagccaactatatattattaggggtagctaagtatacaaatatacctacttattcaat 14160655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 3596318 - 3596358
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  3596318 acaccccacttctccacatttaattgtgtgagctccagcca 3596358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 23919479 - 23919439
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    ||||||||||||||||||||||||||||||| || ||||||    
T  23919479 acaccccatttctccacatttaattgtgtgaactccagcca 23919439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 10585155 - 10585101
Alignment:
Q  125 ttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||| |||| |||||||||||||| |||||||||||| ||||| |||| |||||    
T  10585155 ttgggatagctaaatatatattattaggggtagctaaaaataaaaatatccctac 10585101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 22333843 - 22333881
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagc 39  Q
    |||||||| ||||||||||||||||||||||||| ||||    
T  22333843 acaccccacttctccacatttaattgtgtgagctccagc 22333881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 179
Target Start/End: Original strand, 5382702 - 5382743
Alignment:
Q  138 atatatattattgggggtagctaaacataaacatatacctac 179  Q
    |||||||||||| |||||||||||| ||||| ||||||||||    
T  5382702 atatatattattaggggtagctaaatataaaaatatacctac 5382743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 136; Significance: 6e-71; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 22775200 - 22775411
Alignment:
Q  39 ccagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaa 138  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22775200 ccagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaattattacacctaaaatcgaacttggggtagccaaa 22775299  T
Q  139 tatatattattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt----ggatagccatagctacccctctcttgtataagc 234  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||         ||||    || ||||||||||||||||||||||||| ||||    
T  22775300 tatatattattaggggtagctaaacataaaaatatacctacaaattcaataaaaaaaaatttttttggggtagccatagctacccctctcttgtacaagc 22775399  T
Q  235 attcgcccctgg 246  Q
    |||| |||||||    
T  22775400 attcacccctgg 22775411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 46 - 237
Target Start/End: Complemental strand, 37224524 - 37224332
Alignment:
Q  46 cgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatat 145  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||    
T  37224524 cgaagctagcaataattttatgaggtggccacccgaaagtaacaaaagtcataaaaaattattacacctaaaatcgaacttgggatagccaaatatatat 37224425  T
Q  146 tattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt-ggatagccatagctacccctctcttgtataagcatt 237  Q
    |||| |||||||||||||||||| |||||||||| || |||||         |||| || ||||||||||||||||||||||||| |||||||    
T  37224424 tattaggggtagctaaacataaaaatatacctactaactcaattttttttttttttggggtagccatagctacccctctcttgtacaagcatt 37224332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 38 - 245
Target Start/End: Complemental strand, 37057666 - 37057456
Alignment:
Q  38 gccagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaa 137  Q
    ||||||| ||||||||||||||||||||||||||  ||||||||||||||||||||| ||||||| ||||  ||||||||||||||||||||||||||||    
T  37057666 gccagcggcgaagctagcaataattttatgaggtgaccacccgaaagtaaccaaagttataaaaagttattgcacctaaaatcgaacttggggtagccaa 37057567  T
Q  138 atatatattattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt---ggatagccatagctacccctctcttgtataagc 234  Q
    |||||||||||| |||||||||||||||||| |||||||||| || |||||         ||||   || | |||||||||||||||||| |||| ||||    
T  37057566 atatatattattaggggtagctaaacataaaaatatacctactaactcaataaaatttatttttttggggtggccatagctacccctctcctgtacaagc 37057467  T
Q  235 attcgcccctg 245  Q
    |||||||||||    
T  37057466 attcgcccctg 37057456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 26769761 - 26769910
Alignment:
Q  40 cagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaatt-atgacacctaaaatcgaacttggggtagccaaa 138  Q
    ||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |  ||| ||||||||||||||||||||||||||    
T  26769761 cagcggcgaagctagcaataattttatgaggtggccacccaaaagtaaccaaagtcataaaaaaatgactacatctaaaatcgaacttggggtagccaaa 26769860  T
Q  139 tatatattattgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  26769861 tatatattattaggggtagctaaacataaaaatatacctacaaattcaat 26769910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 46823616 - 46823535
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  || |||||||  ||||||||||||| || ||||||||||| |||||||||||| ||||| ||||||||||    
T  46823616 aaaaaattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctac 46823535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 30500936 - 30500999
Alignment:
Q  113 ctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacc 176  Q
    |||||||| ||||||||||||||| |||||||||||| ||||||||| || ||||| |||||||    
T  30500936 ctaaaatcaaacttggggtagccagatatatattattaggggtagcttaatataaaaatatacc 30500999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 35238723 - 35238786
Alignment:
Q  113 ctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacc 176  Q
    |||||||  |||||||||||||||||||||||||||| ||||||||| || ||||| |||||||    
T  35238723 ctaaaattaaacttggggtagccaaatatatattattaggggtagcttaatataaaaatatacc 35238786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 17653321 - 17653399
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacc 176  Q
    ||||||||||  ||| ||||||  ||||||||||||| |||||||||||||| ||||||| |||| ||||| |||||||    
T  17653321 aaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagttaaatataaaaatatacc 17653399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 39
Target Start/End: Original strand, 49284892 - 49284928
Alignment:
Q  3 accccatttctccacatttaattgtgtgagcttcagc 39  Q
    |||||| ||||||||||||||||||||||||||||||    
T  49284892 accccacttctccacatttaattgtgtgagcttcagc 49284928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 52724671 - 52724605
Alignment:
Q  113 ctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||| |||||| |||||||||||||||||||||||| ||| |||  ||| ||||  ||||||||||    
T  52724671 ctaaagtcgaacatggggtagccaaatatatattattagggatagtcaaatataataatatacctac 52724605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 5174012 - 5173979
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  5174012 acaccccacttctccacatttaattgtgtgagct 5173979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 11995199 - 11995236
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcag 38  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  11995199 acacctcatttctccacatttaattgtgtgagtttcag 11995236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 19222588 - 19222555
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  19222588 acaccccacttctccacatttaattgtgtgagct 19222555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 24303458 - 24303491
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  24303458 acaccccacttctccacatttaattgtgtgagct 24303491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 54769832 - 54769799
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  54769832 acaccccacttctccacatttaattgtgtgagct 54769799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 26770304 - 26770348
Alignment:
Q  198 ttttggatagccatagctacccctctcttgtataagcattcgccc 242  Q
    |||||| ||||||||||||||||||||||  | ||||||||||||    
T  26770304 ttttgggtagccatagctacccctctctttaacaagcattcgccc 26770348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 32401558 - 32401598
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    ||||||||  |||||||||||||||||||||||| ||||||    
T  32401558 acaccccacatctccacatttaattgtgtgagctccagcca 32401598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 35849549 - 35849589
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| |||||| |||||||||||||||||| ||||||    
T  35849549 acaccccacttctccccatttaattgtgtgagctccagcca 35849589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 213 - 245
Target Start/End: Complemental strand, 37224330 - 37224298
Alignment:
Q  213 gctacccctctcttgtataagcattcgcccctg 245  Q
    ||||||||||||||||| |||||||||||||||    
T  37224330 gctacccctctcttgtacaagcattcgcccctg 37224298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 38949742 - 38949782
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| ||||||||||||||| ||||||||| ||||||    
T  38949742 acaccccacttctccacatttaatagtgtgagctccagcca 38949782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 41 - 244
Target Start/End: Original strand, 7590437 - 7590643
Alignment:
Q  41 agcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaata 140  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  7590437 agcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaattattacatctaaaatcgaacttggggtagccaaata 7590536  T
Q  141 tatattattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt---ggatagccatagctacccctctcttgtataagcatt 237  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||         ||||   || ||| ||||||||||||||||||| | |||||||    
T  7590537 tatattattaggggtagctaaacataaaaatatacctacaaattcaataatttttttttttttggggtagtcatagctacccctctcttggacaagcatt 7590636  T
Q  238 cgcccct 244  Q
    |||||||    
T  7590637 cgcccct 7590643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 3886198 - 3886141
Alignment:
Q  122 aacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  3886198 aacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 3886141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 583316 - 583373
Alignment:
Q  122 aacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||| |||||||||||||||| |||||||||||| ||||| ||||||||||    
T  583316 aacttggggtaaccaaatatatattattaggggtagctaaatataaaaatatacctac 583373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 13703156 - 13703075
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  || |||||||  |||||| |||||| |||||||||||||| |||||||||||| ||||| ||||||||||    
T  13703156 aaaaaattatttcatctaaaattaaacttgaggtagctaaatatatattattaggggtagctaaatataaaaatatacctac 13703075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 176
Target Start/End: Complemental strand, 34729587 - 34729509
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacc 176  Q
    ||||||||||  ||| ||||||  ||||||||||||| ||||||||| |||| |||||||||||| ||||| |||||||    
T  34729587 aaaaaattatttcacttaaaattaaacttggggtagctaaatatatactattaggggtagctaaatataaaaatatacc 34729509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 29363878 - 29363959
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  ||| ||||||  || |||||||||| |||||||||||||| || ||||||||| ||||| ||||||||||    
T  29363878 aaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaggagtagctaaatataaaaatatacctac 29363959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 30386819 - 30386876
Alignment:
Q  122 aacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    |||||| | |||| |||||||||||||| |||||||||||| ||||| ||||||||||    
T  30386819 aacttgagatagctaaatatatattattaggggtagctaaatataaaaatatacctac 30386876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 29646550 - 29646510
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  29646550 acaccccacttctccacatttaattgtgtgagctccagcca 29646510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 156
Target Start/End: Original strand, 5122304 - 5122346
Alignment:
Q  114 taaaatcgaacttggggtagccaaatatatattattgggggta 156  Q
    |||||||||||||||||||| |||| |||||||||| ||||||    
T  5122304 taaaatcgaacttggggtagtcaaaaatatattattaggggta 5122346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 32620073 - 32620040
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  32620073 acaccccatttctccacatttaattgtatgagct 32620040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 126; Significance: 6e-65; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 40 - 245
Target Start/End: Complemental strand, 4608263 - 4608056
Alignment:
Q  40 cagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaat 139  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||| ||||||||||||||| |||||||||||    
T  4608263 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaatgattacatctaaaatcgaacttgaggtagccaaat 4608164  T
Q  140 atatattattgggggtagctaaacataaacatatacctacaaattcaat--nnnnnnnnnttttggatagccatagctacccctctcttgtataagcatt 237  Q
    |||||||||| |||||||||||||||||| |||||||||||||||||||           |||||| |||||||||||||||||||||| || |||||||    
T  4608163 atatattattaggggtagctaaacataaaaatatacctacaaattcaataaaatttatttttttgggtagccatagctacccctctcttatacaagcatt 4608064  T
Q  238 cgcccctg 245  Q
    ||||||||    
T  4608063 cgcccctg 4608056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 39 - 242
Target Start/End: Original strand, 23237457 - 23237663
Alignment:
Q  39 ccagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaa 138  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||| |||||||    
T  23237457 ccagcggcgaagctagcaataattttatgaggtggccacccaaaagtaaccaaagtcataaaaaattattacatctaaaatcgaacttggggcagccaaa 23237556  T
Q  139 tatatattattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt---ggatagccatagctacccctctcttgtataagca 235  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||         ||||   || ||||||||||||||||||||||||| |||||    
T  23237557 tatatattattaggggtagctaaacataaaaatatacctacaaattcaataaaatttatttttttggggtagccatagctacccctctcttgtacaagca 23237656  T
Q  236 ttcgccc 242  Q
    |||||||    
T  23237657 ttcgccc 23237663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 27513056 - 27512854
Alignment:
Q  46 cgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatat 145  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  27513056 cgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaattattacacctaaaatcgaacttggggtagccaaatatatat 27512957  T
Q  146 tattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt---ggatagccatagctacccctctcttgtataagcattcgccc 242  Q
    |||| |||||||||||||||||| |||||||||| || |||||         ||||   || ||||||||||||||||||||||||| ||||||| ||||    
T  27512956 tattaggggtagctaaacataaaaatatacctactaactcaataaaatttatttttttggggtagccatagctacccctctcttgtacaagcattggccc 27512857  T
Q  243 ctg 245  Q
    |||    
T  27512856 ctg 27512854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 39606237 - 39606446
Alignment:
Q  39 ccagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaa 138  Q
    |||||| |||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||  |||||||||||||||||| ||||||||||    
T  39606237 ccagcggcgaagctagcaataattttatgaggtggccatccgaaagtaaccaaagtcataaaaaattattgcacctaaaatcgaacttgaggtagccaaa 39606336  T
Q  139 tatatattattgggggtagctaaacataaacatatacctacaaattcaat--nnnnnnnnnttttgga-tagccatagctacccctctcttgtataagca 235  Q
    ||||||||||| |||||||||||||||||| |||||||||| || |||||           ||||||| |||||||||||||||||||| |||| |||||    
T  39606337 tatatattattaggggtagctaaacataaaaatatacctactaactcaataaaatttatttttttggagtagccatagctacccctctcctgtacaagca 39606436  T
Q  236 ttcgcccctg 245  Q
    ||||||||||    
T  39606437 ttcgcccctg 39606446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 39 - 245
Target Start/End: Original strand, 22375836 - 22376045
Alignment:
Q  39 ccagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaatt-atgacacctaaaatcgaacttggggtagccaa 137  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |  ||| |||||||||||| ||||||||||||    
T  22375836 ccagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaaatgactacatctaaaatcgaacctggggtagccaa 22375935  T
Q  138 atatatattattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt--ggatagccatagctacccctctcttgtataagca 235  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||         ||||  || ||||||||||||||||||||||  | |||||    
T  22375936 atatatattattaggggtagctaaacataaaaatatacctacaaattcaataattttttttttttggggtagccatagctacccctctctttaacaagca 22376035  T
Q  236 ttcgcccctg 245  Q
    ||||||||||    
T  22376036 ttcgcccctg 22376045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 39 - 246
Target Start/End: Original strand, 18493731 - 18493943
Alignment:
Q  39 ccagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaatt-atgacacctaaaatcgaacttggggtagccaa 137  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |  ||| |||||||||||| ||||||||||||    
T  18493731 ccagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaaatgactacatctaaaatcgaacctggggtagccaa 18493830  T
Q  138 atatatattattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt----ggatagccatagctacccctctcttgtataag 233  Q
    |||||||||||| |||||||||||||||||| |||||||||||||||||||         ||||    || ||||||||||||||||||||||  | |||    
T  18493831 atatatattattaggggtagctaaacataaaaatatacctacaaattcaatttttttttttttttttggggtagccatagctacccctctctttaacaag 18493930  T
Q  234 cattcgcccctgg 246  Q
    |||||||||||||    
T  18493931 cattcgcccctgg 18493943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 40 - 245
Target Start/End: Original strand, 54508510 - 54508717
Alignment:
Q  40 cagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaatt-atgacacctaaaatcgaacttggggtagccaaa 138  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| | |  ||| |||||||||||| |||||||||||||    
T  54508510 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaatcaaagtcataaaaaaatgactacatctaaaatcgaacctggggtagccaaa 54508609  T
Q  139 tatatattattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt-ggatagccatagctacccctctcttgtataagcatt 237  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||         |||| || ||||||||||||||||||||||  | |||||||    
T  54508610 tatatattattaggggtagctaaacataaaaatatacctacaaattcaataaaatttttttttcgggtagccatagctacccctctctttaacaagcatt 54508709  T
Q  238 cgcccctg 245  Q
    ||||||||    
T  54508710 cgcccctg 54508717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 32595039 - 32595187
Alignment:
Q  40 cagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaat 139  Q
    ||||| ||||||||||||||||||| |||||| |||| ||||||| ||||||||||||||||||||||  ||||||||||||||||||||||||||||||    
T  32595039 cagcggcgaagctagcaataattttttgaggtggccatccgaaagaaaccaaagtcataaaaaattattgcacctaaaatcgaacttggggtagccaaat 32595138  T
Q  140 atatattattgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    |||||||||| |||||||||||||||||| |||||||||| || |||||    
T  32595139 atatattattaggggtagctaaacataaaaatatacctactaactcaat 32595187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 41 - 188
Target Start/End: Original strand, 34021248 - 34021396
Alignment:
Q  41 agcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaatt-atgacacctaaaatcgaacttggggtagccaaat 139  Q
    |||| |||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| | |  ||| |||||||||||| ||||||||||||||    
T  34021248 agcggcgaagctagcaataattttatgaggtggccacccaaaagtaaccaaagtcataaaaaaatgactacatctaaaatcgaacctggggtagccaaat 34021347  T
Q  140 atatattattgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    ||||| |||| |||||||||||||||||| |||||||||||||||||||    
T  34021348 atatactattaggggtagctaaacataaaaatatacctacaaattcaat 34021396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 18502129 - 18502008
Alignment:
Q  46 cgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatat 145  Q
    |||||||||||||||||||||||||| ||||||| ||| |||| ||| ||| |||||||||| |||||||||||||||||| ||||||||||||||||||    
T  18502129 cgaagctagcaataattttatgaggtggccacccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttagggtagccaaatatatat 18502030  T
Q  146 tattgggggtagctaaacataa 167  Q
    |||  ||||||| |||||||||    
T  18502029 tatcaggggtagttaaacataa 18502008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 111 - 179
Target Start/End: Original strand, 44222958 - 44223026
Alignment:
Q  111 acctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    |||||||||||||||||||| | |||||||||||||||| ||||||| |||||||||| ||||||||||    
T  44222958 acctaaaatcgaacttggggcaaccaaatatatattattaggggtagttaaacataaaaatatacctac 44223026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 13768610 - 13768529
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  ||| ||||||  ||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||    
T  13768610 aaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctac 13768529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 21733950 - 21733872
Alignment:
Q  110 cacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    ||||||||||| |||||||||||||||| ||||||||||| |||||||||||| ||| |  |||||||||  |||||||    
T  21733950 cacctaaaatcaaacttggggtagccaactatatattattaggggtagctaaatatatatgtatacctacttattcaat 21733872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 175
Target Start/End: Original strand, 43892856 - 43892933
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatac 175  Q
    ||||||||||  || |||||||  ||||||||| ||| |||||||||||||| |||||||||||| ||||| ||||||    
T  43892856 aaaaaattatttcatctaaaattaaacttggggcagctaaatatatattattaggggtagctaaatataaaaatatac 43892933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 188
Target Start/End: Complemental strand, 20167591 - 20167501
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    ||||||||||   |||||||||| ||||||||||||||||||||||||||   | ||||||| || ||||| |||||| |||  |||||||    
T  20167591 aaaaaattattctacctaaaatcaaacttggggtagccaaatatatattaccagaggtagcttaatataaaaatatacttactcattcaat 20167501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 46721924 - 46721870
Alignment:
Q  125 ttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    |||||||||| |||||||||||||| |||||||||||| ||||| |||| |||||    
T  46721924 ttggggtagctaaatatatattattaggggtagctaaaaataaaaatatccctac 46721870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 188
Target Start/End: Complemental strand, 20618811 - 20618748
Alignment:
Q  125 ttggggtagccaaatatatattattgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    |||||||||||||| |||||||||| ||||||||| || | ||| ||||||||||  |||||||    
T  20618811 ttggggtagccaaacatatattattaggggtagcttaatacaaaaatatacctactcattcaat 20618748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 8762859 - 8762921
Alignment:
Q  125 ttggggtagccaaatatatattattgggggtagctaaacataaacatatacctacaaattcaa 187  Q
    |||||||||| |||||| | ||||| |||||||||||| ||||| ||||||| ||| ||||||    
T  8762859 ttggggtagctaaatattttttatttggggtagctaaatataaaaatataccaacatattcaa 8762921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 179
Target Start/End: Original strand, 30226670 - 30226736
Alignment:
Q  113 ctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||| |||||| ||||||| |||||||||||||||| || ||||| ||| ||||  ||||||||||    
T  30226670 ctaaagtcgaacatggggtaaccaaatatatattattaggagtagccaaatataataatatacctac 30226736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2629647 - 2629680
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  2629647 acaccccacttctccacatttaattgtgtgagct 2629680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 2688164 - 2688197
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    ||||||||||||||||||||||| ||||||||||    
T  2688164 acaccccatttctccacatttaaatgtgtgagct 2688197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 5326559 - 5326592
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  5326559 acaccccatttctccacctttaattgtgtgagct 5326592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 186
Target Start/End: Original strand, 16608608 - 16608669
Alignment:
Q  125 ttggggtagccaaatatatattattgggggtagctaaacataaacatatacctacaaattca 186  Q
    ||||||||||  ||||| ||||||| |||||||||||| ||||| ||||||| || ||||||    
T  16608608 ttggggtagctcaatatttattatttggggtagctaaatataaatatataccaaccaattca 16608669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 32824599 - 32824680
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  ||| ||||||  || ||||| ||||||||||| ||||| | ||||||| |||| ||||| ||||||||||    
T  32824599 aaaaaattatttcacttaaaataaaatttgggatagccaaatatttattactaggggtagttaaatataaaaatatacctac 32824680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38228505 - 38228538
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    ||||||||||||| ||||||||||||||||||||    
T  38228505 acaccccatttctacacatttaattgtgtgagct 38228538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42002374 - 42002407
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  42002374 acaccccacttctccacatttaattgtgtgagct 42002407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 42664049 - 42664082
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  42664049 acaccccacttctccacatttaattgtgtgagct 42664082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 49264594 - 49264627
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  49264594 acaccccacttctccacatttaattgtgtgagct 49264627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 51890865 - 51890898
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  51890865 acaccccacttctccacatttaattgtgtgagct 51890898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 46791210 - 46791170
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| |||| ||||||||||| |||||||||||||||    
T  46791210 acaccccacttcttcacatttaattctgtgagcttcagcca 46791170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 44 - 245
Target Start/End: Original strand, 33538305 - 33538509
Alignment:
Q  44 gacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatat 143  Q
    |||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||    
T  33538305 gacgaagctagcaataattttatgaggtggtcacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaactcgaggtaaccaaatatat 33538404  T
Q  144 attattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt---ggatagccatagctacccctctcttgtataagcattcgc 240  Q
    |||||| || ||||||||||||||| |||||||||||||||||||         ||||   || ||||||||||||||||||||||||| |||| |||||    
T  33538405 attattaggagtagctaaacataaaaatatacctacaaattcaataatttttttttttttggggtagccatagctacccctctcttgtacaagccttcgc 33538504  T
Q  241 ccctg 245  Q
    |||||    
T  33538505 ccctg 33538509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 18606100 - 18606019
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  ||| ||||||  |||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  18606100 aaaaaattatttcacttaaaataaaacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 18606019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 21441927 - 21442008
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  || |||||||  ||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||    
T  21441927 aaaaaattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctac 21442008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 4072561 - 4072642
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  || |||||||  ||||||||||||| || ||||||||||| |||||||||||| ||||| ||||||||||    
T  4072561 aaaaaattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctac 4072642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 41323515 - 41323596
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  || |||||||  ||||||||||||| || ||||||||||| |||||||||||| ||||| ||||||||||    
T  41323515 aaaaaattatttcatctaaaattaaacttggggtagctaattatatattattaggggtagctaaatataaaaatatacctac 41323596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30676306 - 30676273
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    ||||||||||||||||||||||||||||||||||    
T  30676306 acaccccatttctccacatttaattgtgtgagct 30676273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 36433604 - 36433635
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgag 32  Q
    ||||||||||||||||||||||||||||||||    
T  36433604 acaccccatttctccacatttaattgtgtgag 36433635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 1233785 - 1233847
Alignment:
Q  124 cttggggtagccaaatatatattattgggggtagctaaacataaacatatacctacaaattca 186  Q
    |||||||||||  ||||| ||||||| |||||||||||| ||||| ||||||| || ||||||    
T  1233785 cttggggtagctcaatatttattatttggggtagctaaatataaatatataccaaccaattca 1233847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 176
Target Start/End: Complemental strand, 10713921 - 10713855
Alignment:
Q  110 cacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacc 176  Q
    ||||||||||  |||||||||||||||||| ||||||||  ||||||| | || ||||| |||||||    
T  10713921 cacctaaaattaaacttggggtagccaaatgtatattataaggggtagtttaatataaaaatatacc 10713855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 110 - 176
Target Start/End: Original strand, 30932150 - 30932216
Alignment:
Q  110 cacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacc 176  Q
    ||||||||||| |||||||| |||||||| |||||||||| |||  |||| || ||||| |||||||    
T  30932150 cacctaaaatcaaacttgggatagccaaacatatattattagggacagcttaatataaaaatatacc 30932216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 12770436 - 12770469
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  12770436 acaccccacttctccacatttaattgtgtgagct 12770469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 15856508 - 15856475
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  15856508 acaccccacttctccacatttaattgtgtgagct 15856475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 43847003 - 43847036
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  43847003 acaccccacttctccacatttaattgtgtgagct 43847036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 481079 - 481119
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| ||||||||||||||||||||||| || |||||    
T  481079 acaccccacttctccacatttaattgtgtgagatttagcca 481119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 2114951 - 2114991
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| ||||||||||||||||||||| ||| ||||||    
T  2114951 acaccccacttctccacatttaattgtgtgggctccagcca 2114991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 37981241 - 37981201
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||| ||| |||| |||||||||||||||||||||||||||    
T  37981241 acacgccacttcttcacatttaattgtgtgagcttcagcca 37981201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 41458363 - 41458403
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||| ||| |||||||||||||| |||||||||||||||||    
T  41458363 acactccacttctccacatttaaatgtgtgagcttcagcca 41458403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 39570965 - 39570764
Alignment:
Q  46 cgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatat 145  Q
    ||||||||||||||||||||||| || |||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  39570965 cgaagctagcaataattttatgacgtggccatccgaaagtaacaaaagtcataaaaaattattacacctaaaatcgaacttggggtagccaaatatatat 39570866  T
Q  146 tattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt--ggatagccatagctacccctctcttgtataagcattcgcccc 243  Q
    |||| |||||||||||||||||| |||||||||| || |||||         ||||  || ||||||||||||||||||||||||| |||||||||||||    
T  39570865 tattaggggtagctaaacataaaaatatacctactaactcaataattttttttttttggggtagccatagctacccctctcttgtacaagcattcgcccc 39570766  T
Q  244 tg 245  Q
    ||    
T  39570765 tg 39570764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 46 - 246
Target Start/End: Original strand, 12947240 - 12947445
Alignment:
Q  46 cgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaa-ttatgacacctaaaatcgaacttggggtagccaaatatata 144  Q
    |||||||| ||||||||||||||||| ||||||||||| |||| |||||||||||||| |||| ||||  |||||||||||||||||||| |||||||||    
T  12947240 cgaagctaacaataattttatgaggtggccacccgaaaataactaaagtcataaaaaaattattacacaaaaaatcgaacttggggtagcaaaatatata 12947339  T
Q  145 ttattgggggtagctaaacat-aaacatatacctacaaattcaatnnnnnnnnntttt---ggatagccatagctacccctctcttgtataagcattcgc 240  Q
    ||||| | ||||||||||||| ||| |||||||||| || |||||         ||||   || |||||||||||| |||||||||||||||||||||||    
T  12947340 ttattagaggtagctaaacataaaaaatatacctactaactcaataaaatttatttttttggggtagccatagctatccctctcttgtataagcattcgc 12947439  T
Q  241 ccctgg 246  Q
    ||||||    
T  12947440 ccctgg 12947445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 12933028 - 12933150
Alignment:
Q  46 cgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatat 145  Q
    ||||||||  ||||||||||| |||| | ||||||||| |||| |||||||||||||||||| ||||  |||||||||||||||||| | ||||||||||    
T  12933028 cgaagctaataataattttataaggtggtcacccgaaaataactaaagtcataaaaaattattacacaaaaaatcgaacttggggtaacaaaatatatat 12933127  T
Q  146 tattgggggtagctaaacataaa 168  Q
    |||| | ||||||||||||||||    
T  12933128 tattagaggtagctaaacataaa 12933150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 188
Target Start/End: Complemental strand, 6735981 - 6735903
Alignment:
Q  110 cacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    |||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||| |||||||||| || |||||    
T  6735981 cacctaaaatcgaacttggggtagccaaatatatattattagaggtagctaaatataaaaatatacctactaactcaat 6735903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 48 - 147
Target Start/End: Original strand, 42091890 - 42091989
Alignment:
Q  48 aagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatatta 147  Q
    ||||||||||||||||||| | ||  | ||||||| ||||||||||||| |||||||||| || |||||||| |||||||| |||||||||||| |||||    
T  42091890 aagctagcaataattttataaagtgactacccgaaggtaaccaaagtcacaaaaaattattacgcctaaaatagaacttggagtagccaaatatgtatta 42091989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 17769310 - 17769391
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  || |||||||  ||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||    
T  17769310 aaaaaattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctac 17769391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 21360971 - 21360905
Alignment:
Q  113 ctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    |||||||||||| |||||||||||||||||||||||| |||||||| ||| ||||  ||||||||||    
T  21360971 ctaaaatcgaacatggggtagccaaatatatattattaggggtagccaaatataataatatacctac 21360905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 90 - 149
Target Start/End: Complemental strand, 42580522 - 42580463
Alignment:
Q  90 aaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattatt 149  Q
    ||||||| ||||||||||  ||||||||||| || ||||| |||||||||||||||||||    
T  42580522 aaagtcaaaaaaaattatttcacctaaaatcaaaattgggatagccaaatatatattatt 42580463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 180
Target Start/End: Complemental strand, 13517324 - 13517243
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctaca 180  Q
    ||||||||||  || |||||||  ||||||||||||  ||||||||||||||  ||||||||||| ||||| |||||||||||    
T  13517324 aaaaaattatttcatctaaaattaaacttggggtagttaaatatatattatt-agggtagctaaatataaaaatatacctaca 13517243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 39685662 - 39685744
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattatt-gggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  ||| ||||||  ||||||||||||| |||||||||||||| | || |||||||| ||||| ||||||||||    
T  39685662 aaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattagaggatagctaaatataaaaatatacctac 39685744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24477893 - 24477933
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  24477893 acaccccacttctccacatttaattgtgtgagctccagcca 24477933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 4068050 - 4068083
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  4068050 acaccccacttctccacatttaattgtgtgagct 4068083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20145566 - 20145533
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  20145566 acaccccacttctccacatttaattgtgtgagct 20145533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 29646112 - 29646075
Alignment:
Q  4 ccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  29646112 ccccacttctccacatttaattgtgtgagctccagcca 29646075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 188
Target Start/End: Original strand, 42092340 - 42092385
Alignment:
Q  143 tattattgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    ||||||| |||||||||||||||||| |||||||||| || |||||    
T  42092340 tattattaggggtagctaaacataaaaatatacctactaactcaat 42092385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 7171796 - 7171836
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| ||||||||| ||||||||||||||| ||||||    
T  7171796 acaccccacttctccacaattaattgtgtgagctccagcca 7171836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 245
Target Start/End: Complemental strand, 44592721 - 44592518
Alignment:
Q  46 cgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatat 145  Q
    |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||    
T  44592721 cgaagctagcaataattttatgaggtggccacccgaaagtaacaaaagtcataaaaaattattacacctaaaatcaaacttggggtagccaaatatatat 44592622  T
Q  146 tattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt----ggatagccatagctacccctctcttgtataagcattcgcc 241  Q
    |||| |||||||||||||||||| |||||||||| || |||||         ||||    || ||||||||||||||||||||||||| |||||||||||    
T  44592621 tattaggggtagctaaacataaaaatatacctactaactcaataaagtttattttttttggggtagccatagctacccctctcttgtacaagcattcgcc 44592522  T
Q  242 cctg 245  Q
    ||||    
T  44592521 cctg 44592518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 47 - 188
Target Start/End: Original strand, 36156901 - 36157042
Alignment:
Q  47 gaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatatt 146  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||    
T  36156901 gaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataagaaattattacacctaaaattgaacttggggtagccaaatatatatt 36157000  T
Q  147 attgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    ||| ||||||||||| |||||| ||||||||| |||||||||    
T  36157001 attaggggtagctaagcataaaaatatacctataaattcaat 36157042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 40 - 246
Target Start/End: Complemental strand, 50099746 - 50099537
Alignment:
Q  40 cagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaatt-atgacacctaaaatcgaacttggggtagccaaa 138  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |  ||| |||||||||||| |||||||| ||||    
T  50099746 cagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagtcataaaaaaatgactacatctaaaatcgaacctggggtagtcaaa 50099647  T
Q  139 tatatattattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt--ggatagccatagctacccctctcttgtataagcat 236  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||         ||||  || ||||||||||||||||||||||  | ||||||    
T  50099646 tatatattattaggggtagctaaacataaaaatatacctacaaattcaataattttttttttttggggtagccatagctacccctctctttaacaagcat 50099547  T
Q  237 tcgcccctgg 246  Q
    ||||||||||    
T  50099546 tcgcccctgg 50099537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 46 - 179
Target Start/End: Complemental strand, 27773687 - 27773554
Alignment:
Q  46 cgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatat 145  Q
    |||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||||||||||||||||||||| |||||||||||    
T  27773687 cgaagctagcaataattttatgaggtagccacccgaaagttaccgaagtcacaaaaaattattacacctaaaatcgaacttggggtaggcaaatatatat 27773588  T
Q  146 tattgggggtagctaaacataaacatatacctac 179  Q
    |||| |||||||||||||||||| ||||||||||    
T  27773587 tattaggggtagctaaacataaaaatatacctac 27773554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 40 - 188
Target Start/End: Original strand, 50303874 - 50304023
Alignment:
Q  40 cagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaatt-atgacacctaaaatcgaacttggggtagccaaa 138  Q
    ||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| | |  ||| |||||||||||| || | ||||||||    
T  50303874 cagcggcgaagctagcaataattttatgaggtggccatccgaaagtaaccaaagtcataaaaaaatgactacatctaaaatcgaacctgagatagccaaa 50303973  T
Q  139 tatatattattgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    ||||||||||| |||||||||||||||||| |||||||||||||||||||    
T  50303974 tatatattattaggggtagctaaacataaaaatatacctacaaattcaat 50304023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 37 - 175
Target Start/End: Complemental strand, 43022692 - 43022554
Alignment:
Q  37 agccagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagcca 136  Q
    |||||||| ||||||| |||||||||||||||||| |||| |||||||||| |||| |||||||||||||| ||| |||||||||||||| |||||||||    
T  43022692 agccagcggcgaagcttgcaataattttatgaggtggccatccgaaagtaatcaaaatcataaaaaattattacatctaaaatcgaactttgggtagcca 43022593  T
Q  137 aatatatattattgggggtagctaaacataaacatatac 175  Q
    ||||||||||||| ||||||| |||||||||| ||||||    
T  43022592 aatatatattattaggggtagttaaacataaaaatatac 43022554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 50 - 188
Target Start/End: Complemental strand, 43411068 - 43410929
Alignment:
Q  50 gctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataa-aaaattatgacacctaaaatcgaacttggggtagccaaatatatattat 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |||||||| ||||| ||||| |||||||||||||||    
T  43411068 gctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaaattattacatctaaaatcaaacttagggtaaccaaatatatattat 43410969  T
Q  149 tgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    | ||| |||||||| ||||| |||||||||| || |||||    
T  43410968 tagggatagctaaatataaaaatatacctactaactcaat 43410929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 7493479 - 7493398
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  ||| ||||||  |||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||    
T  7493479 aaaaaattatttcacttaaaataaaacttggggtagccaaatatatattattggaggtagctaaatataaaaatatacctac 7493398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 40 - 188
Target Start/End: Complemental strand, 26633135 - 26632988
Alignment:
Q  40 cagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaa-gtcata--aaaaattatgacacctaaaatcgaacttggggtagcca 136  Q
    ||||| |||||||||||| ||||||||||| | | ||||||||| ||| |||| |||| |  |||||||||   ||||||||||||||||| |||| |||    
T  26633135 cagcggcgaagctagcaacaattttatgagatggtcacccgaaattaatcaaatgtcaaacaaaaaattat---acctaaaatcgaacttgaggtaacca 26633039  T
Q  137 aatatatattattgggggtagctaaacataaacatatacctacaaattcaat 188  Q
    |||||||||||||   |||| ||||||||||| |||||||||| || |||||    
T  26633038 aatatatattatt-aaggtaactaaacataaaaatatacctactaactcaat 26632988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 10619875 - 10619794
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  || |||||||  ||||||||||||| |||||||||||||| |||||||||||| ||||| ||||||||||    
T  10619875 aaaaaattatttcatctaaaattaaacttggggtagctaaatatatattattaggggtagctaaatataaaaatatacctac 10619794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 81 - 160
Target Start/End: Complemental strand, 29681177 - 29681098
Alignment:
Q  81 aaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagcta 160  Q
    ||||||| ||||| |||| ||||||||  || |||||||| |||||||||||||||||||||||||||  ||||||||||    
T  29681177 aaagtaatcaaagacatacaaaattatttcaactaaaatcaaacttggggtagccaaatatatattatcaggggtagcta 29681098  T

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Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 44429812 - 44429892
Alignment:
Q  99 aaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    |||||||||  ||| ||||||  || |||||||||||||||| |||||||| |||||||||||| ||||| ||||||||||    
T  44429812 aaaaattatttcacttaaaattaaatttggggtagccaaataaatattattaggggtagctaaatataaaaatatacctac 44429892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 176
Target Start/End: Original strand, 39618450 - 39618513
Alignment:
Q  113 ctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacc 176  Q
    |||||| | |||||||||||||||||||||||||||| ||||||||| || ||||| |||||||    
T  39618450 ctaaaagcaaacttggggtagccaaatatatattattaggggtagcttaatataaaaatatacc 39618513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 81 - 160
Target Start/End: Original strand, 48366657 - 48366736
Alignment:
Q  81 aaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagcta 160  Q
    ||||||| |||||||||| ||||||||  || |||||||| ||||| || ||||||||||||||||||  ||||||||||    
T  48366657 aaagtaatcaaagtcatacaaaattatttcaactaaaatcaaacttaggatagccaaatatatattatcaggggtagcta 48366736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 198 - 245
Target Start/End: Complemental strand, 43022499 - 43022452
Alignment:
Q  198 ttttggatagccatagctacccctctcttgtataagcattcgcccctg 245  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||||    
T  43022499 ttttgggtagccatagctacccctctcttgtacaaacattcgcccctg 43022452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 15757473 - 15757407
Alignment:
Q  113 ctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    |||||||  ||||||||||||  |||||||||||||| ||||||| |||| ||||| ||||||||||    
T  15757473 ctaaaattaaacttggggtagttaaatatatattattaggggtagataaatataaaaatatacctac 15757407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 7000964 - 7000927
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcag 38  Q
    |||||||| |||||||||||||||||||||||||||||    
T  7000964 acaccccacttctccacatttaattgtgtgagcttcag 7000927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25036264 - 25036231
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    ||||||||||||||||||||||||||||||||||    
T  25036264 acaccccatttctccacatttaattgtgtgagct 25036231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 25041476 - 25041443
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    ||||||||||||||||||||||||||||||||||    
T  25041476 acaccccatttctccacatttaattgtgtgagct 25041443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 26909872 - 26909832
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| |||||||||||||| |||||||||||||||||    
T  26909872 acaccccacttctccacatttaaatgtgtgagcttcagcca 26909832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 2 - 41
Target Start/End: Original strand, 37280770 - 37280809
Alignment:
Q  2 caccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    ||||||| ||||||||||||||||||||||||| ||||||    
T  37280770 caccccacttctccacatttaattgtgtgagctccagcca 37280809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7491829 - 7491862
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  7491829 acaccccacttctccacatttaattgtgtgagct 7491862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11333732 - 11333765
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  11333732 acaccccacttctccacatttaattgtgtgagct 11333765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 11491753 - 11491786
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  11491753 acaccccacttctccacatttaattgtgtgagct 11491786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 23991266 - 23991233
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  23991266 acaccccacttctccacatttaattgtgtgagct 23991233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 47469075 - 47469042
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  47469075 acaccccacttctccacatttaattgtgtgagct 47469042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 50119040 - 50119073
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  50119040 acaccccacttctccacatttaattgtgtgagct 50119073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 41
Target Start/End: Complemental strand, 2514607 - 2514571
Alignment:
Q  5 cccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||| ||||||||||||||||||||||||| ||||||    
T  2514607 cccacttctccacatttaattgtgtgagctccagcca 2514571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 16997261 - 16997221
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    ||||| || ||||||||||| ||||||||||||||||||||    
T  16997261 acacctcacttctccacattcaattgtgtgagcttcagcca 16997221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 24875039 - 24875079
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| ||||||| ||||||||||||||||| ||||||    
T  24875039 acaccccacttctccatatttaattgtgtgagctccagcca 24875079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 76
Target Start/End: Original strand, 33409366 - 33409402
Alignment:
Q  40 cagcgacgaagctagcaataattttatgaggtagcca 76  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  33409366 cagcgacgaagctagcaatatttttatgaggtggcca 33409402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 38 - 246
Target Start/End: Original strand, 23333243 - 23333454
Alignment:
Q  38 gccagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaa 137  Q
    ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||  ||||||||||||||||||| ||||||||    
T  23333243 gccagcggcgaagctagcaataattttatgaggtggccacccgaaagtaaccaaagttataaaaaattattgcacctaaaatcgaacttggagtagccaa 23333342  T
Q  138 atatatattattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt---ggatagccatagctacccctctcttgtataagc 234  Q
    |||||||||||| |||||||||||||||||| |||||||||| || |||||         ||||   || | |||||||||||||||||| |||| ||||    
T  23333343 atatatattattaggggtagctaaacataaaaatatacctactaactcaataaaatttatttttttggggtggccatagctacccctctcctgtacaagc 23333442  T
Q  235 attcgcccctgg 246  Q
    ||||||||||||    
T  23333443 attcgcccctgg 23333454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 40 - 248
Target Start/End: Original strand, 27571543 - 27571753
Alignment:
Q  40 cagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaat 139  Q
    ||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||| |||||||||| |||||||||||||||| | ||||||||||||    
T  27571543 cagcggcgaagctagcaataattttatgaggtggccaccctaaagtaaccaaagtcacaaaaaattattacacctaaaatcgaacatagggtagccaaat 27571642  T
Q  140 atatattattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnntttt--ggatagccatagctacccctctcttgtataagcatt 237  Q
    |||||||||| |||||||||||||||||| |||||||||| || ||| |         ||||  || ||||||||||||||||| | ||||| |||||||    
T  27571643 atatattattaggggtagctaaacataaaaatatacctactaactcattaattttttttttttggggtagccatagctacccctttgttgtacaagcatt 27571742  T
Q  238 cgcccctggct 248  Q
    |||||||||||    
T  27571743 cgcccctggct 27571753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 46 - 242
Target Start/End: Original strand, 27098835 - 27099031
Alignment:
Q  46 cgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatat 145  Q
    |||||||| ||||||||||||||||| ||||||| ||||||| |||||||| |||||||||| |||  ||||||  || ||||| |||||||||||||||    
T  27098835 cgaagctaacaataattttatgaggtggccaccccaaagtaatcaaagtcacaaaaaattattacatttaaaattaaatttgggatagccaaatatatat 27098934  T
Q  146 tattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnnttttggatagccatagctacccctctcttgtataagcattcgccc 242  Q
    |||| |||||||||||||||||| ||| |||||| || |||||         |||||| ||||||||||||||||| | ||||| ||||||||||||    
T  27098935 tattaggggtagctaaacataaatataaacctactaactcaataatttttttttttgggtagccatagctacccctttgttgtacaagcattcgccc 27099031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 46 - 242
Target Start/End: Complemental strand, 27179468 - 27179272
Alignment:
Q  46 cgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatat 145  Q
    |||||||| ||||||||||||||||| ||||||| ||||||| |||||||| |||||||||| |||  ||||||  || ||||| |||||||||||||||    
T  27179468 cgaagctaacaataattttatgaggtggccaccccaaagtaatcaaagtcacaaaaaattattacatttaaaattaaatttgggatagccaaatatatat 27179369  T
Q  146 tattgggggtagctaaacataaacatatacctacaaattcaatnnnnnnnnnttttggatagccatagctacccctctcttgtataagcattcgccc 242  Q
    |||| |||||||||||||||||| ||| |||||| || |||||         |||||| ||||||||||||||||| | ||||| ||||||||||||    
T  27179368 tattaggggtagctaaacataaatataaacctactaactcaataatttttttttttgggtagccatagctacccctttgttgtacaagcattcgccc 27179272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 40 - 244
Target Start/End: Original strand, 33036024 - 33036230
Alignment:
Q  40 cagcgacgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaat 139  Q
    ||||| |||| ||||||||||||||||||||| |||| || ||| |||  ||| ||| |||||||||| |||||||||||||||||||||||||||||||    
T  33036024 cagcggcgaaactagcaataattttatgaggtggccatccaaaactaatgaaattcacaaaaaattattacacctaaaatcgaacttggggtagccaaat 33036123  T
Q  140 atatattattgggggtagctaaacataaacatatacctacaaattcaat--nnnnnnnnnttttggatagccatagctacccctctcttgtataagcatt 237  Q
    |||||||||  ||||||| |||||||||| |||||| |||  | |||||           |||||| ||||||||||||||||| | ||||| |||||||    
T  33036124 atatattatcaggggtagttaaacataaaaatatacatactgactcaataaaatttatttttttgggtagccatagctacccctttgttgtacaagcatt 33036223  T
Q  238 cgcccct 244  Q
    |||||||    
T  33036224 cgcccct 33036230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 46 - 245
Target Start/End: Original strand, 38892097 - 38892297
Alignment:
Q  46 cgaagctagcaataattttatgaggtagccacccgaaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatat 145  Q
    |||||||||||||||||||||||||| | || || ||| |||| ||| ||| |||||||||| ||||||||||||||||||||||||  |||||||||||    
T  38892097 cgaagctagcaataattttatgaggtggtcatccaaaactaacgaaattcacaaaaaattattacacctaaaatcgaacttggggtaatcaaatatatat 38892196  T
Q  146 tattgggggtagctaaacataaacatatacctacaaattcaat--nnnnnnnnnttttggatagccatagctacccctctcttgtataagcattcgcccc 243  Q
    || |  ||||||||||||||||| ||||||||||  | |||||           |||||| ||||||||||||||||| | ||||| |||||||||||||    
T  38892197 ta-tcagggtagctaaacataaaaatatacctactgactcaataaaatttatttttttgggtagccatagctacccctttgttgtacaagcattcgcccc 38892295  T
Q  244 tg 245  Q
    ||    
T  38892296 tg 38892297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 45809973 - 45810054
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  ||| ||||||  ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||    
T  45809973 aaaaaattatttcacttaaaataaaacttggggtagccaaatatatattattgggggtagctaaatataaaaatatacctac 45810054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 82 - 160
Target Start/End: Original strand, 5437129 - 5437207
Alignment:
Q  82 aagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagcta 160  Q
    |||||| |||||||||| ||||||||  || |||||||| |||||||||||||||||||||||||||  ||||||||||    
T  5437129 aagtaatcaaagtcatacaaaattatttcaactaaaatcaaacttggggtagccaaatatatattatcaggggtagcta 5437207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 41532478 - 41532412
Alignment:
Q  113 ctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||| |||||| |||||||||||||||||||||||| |||||||| ||| ||||  ||||||||||    
T  41532478 ctaaagtcgaacatggggtagccaaatatatattattaggggtagccaaatataataatatacctac 41532412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 98 - 176
Target Start/End: Original strand, 48609439 - 48609517
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacc 176  Q
    ||||||||||  ||| ||||||  ||||||||||||| |||||||||||||| ||||||| |||| ||||| |||||||    
T  48609439 aaaaaattatttcacttaaaattaaacttggggtagctaaatatatattattaggggtagttaaatataaaaatatacc 48609517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 158
Target Start/End: Complemental strand, 11468699 - 11468622
Alignment:
Q  81 aaagtaaccaaagtcataaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagc 158  Q
    ||||||| |||||||| | ||||||||  || |||||||| |||||| ||||||||||||||||||||| | ||||||    
T  11468699 aaagtaatcaaagtcagacaaaattatttcaactaaaatcaaacttgaggtagccaaatatatattattagaggtagc 11468622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 122 - 179
Target Start/End: Original strand, 33335982 - 33336039
Alignment:
Q  122 aacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||||  |||||||||||||| |||||||||||| ||||| ||||||||||    
T  33335982 aacttggggtagttaaatatatattattaggggtagctaaatataaatatatacctac 33336039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 113 - 176
Target Start/End: Complemental strand, 2411018 - 2410955
Alignment:
Q  113 ctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacc 176  Q
    |||||||| || |||| |||||||||||||||||||| ||||||||| || ||||| |||||||    
T  2411018 ctaaaatcaaatttggagtagccaaatatatattattaggggtagcttaatataaaaatatacc 2410955  T

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Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 125 - 179
Target Start/End: Original strand, 83978 - 84032
Alignment:
Q  125 ttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    |||||||| | |||||||||||||| |||||||||||| ||||| ||||||||||    
T  83978 ttggggtaactaaatatatattattaggggtagctaaatataaaaatatacctac 84032  T

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Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 758653 - 758572
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  ||| ||||||  || |||||||||| ||||||||||||||  |||||| |||| ||||| ||||||||||    
T  758653 aaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaagggtagataaatataaaaatatacctac 758572  T

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Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 46212010 - 46212091
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  ||| ||||||  || |||||||||| |||||||||||||| |  ||||||||| ||||| ||||||||||    
T  46212010 aaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattagaagtagctaaatataaaaatatacctac 46212091  T

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Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 36558414 - 36558371
Alignment:
Q  113 ctaaaatcgaacttggggtagccaaatatatattattgggggta 156  Q
    |||||||| |||||| ||||||||||||||||||||| ||||||    
T  36558414 ctaaaatcaaacttgaggtagccaaatatatattattaggggta 36558371  T

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Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 159
Target Start/End: Original strand, 19532360 - 19532406
Alignment:
Q  113 ctaaaatcgaacttggggtagccaaatatatattattgggggtagct 159  Q
    |||||||| || |||||||||||||||||||||||||  ||||||||    
T  19532360 ctaaaatcaaatttggggtagccaaatatatattattaagggtagct 19532406  T

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Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 41331081 - 41331047
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagctt 35  Q
    |||||||| ||||||||||||||||||||||||||    
T  41331081 acaccccacttctccacatttaattgtgtgagctt 41331047  T

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Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Complemental strand, 45855440 - 45855378
Alignment:
Q  125 ttggggtagccaaatatatattattgggggtagctaaacataaacatatacctacaaattcaa 187  Q
    ||||||||||  ||||| ||||||| |||||||||||| ||||| ||||||| || |||||||    
T  45855440 ttggggtagctcaatatttattatttggggtagctaaatataaatatataccgaccaattcaa 45855378  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 25155609 - 25155642
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  25155609 acaccccacttctccacatttaattgtgtgagct 25155642  T

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Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 38151412 - 38151445
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  38151412 acaccccacttctccacatttaattgtgtgagct 38151445  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 40518891 - 40518858
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagct 34  Q
    |||||||| |||||||||||||||||||||||||    
T  40518891 acaccccacttctccacatttaattgtgtgagct 40518858  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 178
Target Start/End: Complemental strand, 2826805 - 2826749
Alignment:
Q  122 aacttggggtagccaaatatatattattgggggtagctaaacataaacatataccta 178  Q
    ||||||| ||||| |||||||||||||| | | |||||||| ||||| |||||||||    
T  2826805 aacttggagtagctaaatatatattattagagatagctaaatataaaaatataccta 2826749  T

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Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 22548279 - 22548319
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| ||||||||||||||||| ||||||| ||||||    
T  22548279 acaccccacttctccacatttaattgcgtgagctccagcca 22548319  T

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Target: scaffold0049 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 179
Target Start/End: Complemental strand, 46932 - 46875
Alignment:
Q  122 aacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    |||||||||||||||||||||||||||| |||||||||||| ||||| ||||||||||    
T  46932 aacttggggtagccaaatatatattattaggggtagctaaatataaaaatatacctac 46875  T

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Target: scaffold0049; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 15084 - 15003
Alignment:
Q  98 aaaaaattatgacacctaaaatcgaacttggggtagccaaatatatattattgggggtagctaaacataaacatatacctac 179  Q
    ||||||||||  ||| ||||||  || |||||||||| |||||||||||||| |||||||||||  ||||| ||||||||||    
T  15084 aaaaaattatttcacttaaaattaaatttggggtagctaaatatatattattaggggtagctaattataaaaatatacctac 15003  T

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Target: scaffold0154 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 28823 - 28783
Alignment:
Q  1 acaccccatttctccacatttaattgtgtgagcttcagcca 41  Q
    |||||||| ||||||||||||||||||||||||| ||||||    
T  28823 acaccccacttctccacatttaattgtgtgagctccagcca 28783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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