View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3048_low_3 (Length: 720)

Name: NF3048_low_3
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3048_low_3
NF3048_low_3
[»] chr8 (4 HSPs)
chr8 (18-720)||(26494510-26495212)
chr8 (382-586)||(26506901-26507105)
chr8 (21-288)||(26506558-26506825)
chr8 (401-498)||(41127308-41127405)
[»] chr5 (2 HSPs)
chr5 (401-516)||(15176287-15176402)
chr5 (122-189)||(15176593-15176660)
[»] chr2 (14 HSPs)
chr2 (233-346)||(2327134-2327247)
chr2 (401-517)||(2330996-2331112)
chr2 (404-517)||(2303729-2303842)
chr2 (401-517)||(2327281-2327397)
chr2 (224-288)||(2330840-2330904)
chr2 (242-346)||(2351164-2351268)
chr2 (401-517)||(2310444-2310560)
chr2 (401-500)||(2321428-2321527)
chr2 (224-346)||(2303570-2303692)
chr2 (401-517)||(2294113-2294229)
chr2 (224-276)||(2321272-2321324)
chr2 (115-189)||(2293848-2293922)
chr2 (537-586)||(2294246-2294295)
chr2 (537-586)||(2310577-2310626)
[»] chr4 (1 HSPs)
chr4 (401-447)||(55017087-55017133)


Alignment Details
Target: chr8 (Bit Score: 667; Significance: 0; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 667; E-Value: 0
Query Start/End: Original strand, 18 - 720
Target Start/End: Original strand, 26494510 - 26495212
Alignment:
Q  18 cactagagtgggttatggcgaatttggtgaaagacaaacacgtgcaacagatgctagtggaggaaattgaagaggtggttggtgaaagagaagaaaggga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26494510 cactagagtgggttatggcgaatttggtgaaagacaaacacgtgcaacagatgctagtggaggaaattgaagaggtggttggtgaaagagaggaaaggga 26494609  T
Q  118 agtgagagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcctccaactcactacacaattccacgtgta 217  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  26494610 agtgagagaggaagatttggagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcctcctactcactacacaattccacgtgta 26494709  T
Q  218 gtgacggaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggagg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  26494710 gtgacggaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattagatccaacggtttgggagg 26494809  T
Q  318 atcctacggtgtttaagccagagaggtttctaaaagatgcaaaaaatagaaacgaatttgacgcatttgatgttaggggtataaaagagataaagatgat 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494810 atcctacggtgtttaagccagagaggtttctaaaagatgcaaaaaatagaaacgaatttgacgcatttgatgttaggggtataaaagagataaagatgat 26494909  T
Q  418 gccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaag 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26494910 gccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttgaactttgagtggaag 26495009  T
Q  518 acttcattaccaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatccactagaaaatcaaatttctctcaggaactaga 617  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  26495010 acttcattaccaggaagtaatgttgatttgacagaaaaacaggaatttacaatggtgatgaaatatccactagaagctcaaatttctctcaggaattaga 26495109  T
Q  618 ttcaacaattggagacattttataggacatgatcatgattgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacaca 717  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26495110 ttcaacaattggagacattttataggacatgatcaggattgtgcaccattgcaaagtaaaacaaaaagtatatcaaccataaaacaatggtgcaaacaca 26495209  T
Q  718 ttt 720  Q
    |||    
T  26495210 ttt 26495212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 382 - 586
Target Start/End: Original strand, 26506901 - 26507105
Alignment:
Q  382 atttgatgttaggggtataaaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatac 481  Q
    |||||||||||  |||  ||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |||    
T  26506901 atttgatgttacaggtcaaaatgagataaagatgatgccatttggagcaggaaggaggatttgtcctgcctataacttggcaatgctccatgtagagtac 26507000  T
Q  482 tttgttgctaatttggttttgaactttgagtggaagacttcattaccaggaagtaatgttgatttgacagaaaaacaagaatttacaatggtgatgaaat 581  Q
    |||||  | ||||| |||| ||||||||| ||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||||||||||    
T  26507001 tttgtgacaaatttagtttggaactttgaatggaagacttcattaccagaaagtaatgttgatttgtcagaaaaacaggaatttactatggtgatgaaat 26507100  T
Q  582 atcca 586  Q
    |||||    
T  26507101 atcca 26507105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 21 - 288
Target Start/End: Original strand, 26506558 - 26506825
Alignment:
Q  21 tagagtgggttatggcgaatttggtgaaagacaaacacgtgcaacagatgctagtggaggaaattgaagaggtggttggtgaaagagaagaaagggaagt 120  Q
    ||||||||||||||||||||||||| ||| ||||||| |||||||| |   |||| |||||||||| ||  ||  ||||||| ||||| ||||| |||||    
T  26506558 tagagtgggttatggcgaatttggtcaaatacaaacatgtgcaacaaagaatagtcgaggaaattggagttgtaattggtgatagagaggaaagagaagt 26506657  T
Q  121 gagagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcctccaactcactacacaattccacgtgtagtg 220  Q
     | ||||||||||||| | || || || ||| | ||||| |||||||| |||||||||||||| || |||||  ||||||||  |||||||| || ||||    
T  26506658 aaaagaggaagatttggaaaagttaccttatcttaaggcagtgattttagaagggttaaggcgccaccctccttctcactacttaattccacatgcagtg 26506757  T
Q  221 acggaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcaga 288  Q
    || |||||| |  |||| || |||||||||||||||||||||||||| || |||||||||||||||||    
T  26506758 accgaggatgtgatttttaacggttacttggtgcctaaaaatgggacagttaattttatggtggcaga 26506825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 401 - 498
Target Start/End: Original strand, 41127308 - 41127405
Alignment:
Q  401 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggt 498  Q
    ||||||||||||||||||||||||||||  |||||||| ||||||||||  ||||| || ||  |||||||||| ||||||||||| |||||||||||    
T  41127308 aaagagataaagatgatgccgtttggagttgggaggagaatttgtcctggatataatttagctttgctccatttggaatactttgtggctaatttggt 41127405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 401 - 516
Target Start/End: Complemental strand, 15176402 - 15176287
Alignment:
Q  401 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 500  Q
    |||||||||||||||||||| ||||||||||||||||| || ||||||| ||||   || ||| || | || || |||||||||||||| ||||| ||||    
T  15176402 aaagagataaagatgatgccatttggagcagggaggagaatgtgtcctggctatggtttagcattgttgcacttggaatactttgttgccaattttgttt 15176303  T
Q  501 tgaactttgagtggaa 516  Q
    |||| |||||||||||    
T  15176302 tgaattttgagtggaa 15176287  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 189
Target Start/End: Complemental strand, 15176660 - 15176593
Alignment:
Q  122 agagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcc 189  Q
    ||||| ||||||||| | ||| |||||||| | || ||||| |||||||||||| |||||||||||||    
T  15176660 agagaagaagatttgaaaaaaatgccatatcttaaagctgtaattttggaagggctaaggcgtcatcc 15176593  T

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Target: chr2 (Bit Score: 50; Significance: 3e-19; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 233 - 346
Target Start/End: Original strand, 2327134 - 2327247
Alignment:
Q  233 gttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatcctacggtgttta 332  Q
    |||||||||||||| |||||||||||||||||||| |||||||| ||||||||||| || || ||  ||||    |||||||||||||| | || |||||    
T  2327134 gttttgaatggttatttggtgcctaaaaatgggacggtgaatttcatggtggcagagatggggttggatcctcgtgtttgggaggatccaatggagttta 2327233  T
Q  333 agccagagaggttt 346  Q
    ||||||| ||||||    
T  2327234 agccagaaaggttt 2327247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 401 - 517
Target Start/End: Original strand, 2330996 - 2331112
Alignment:
Q  401 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 500  Q
    |||||||||||||||||||| |||||||| |||||||| ||||||||||  ||||| || ||  |||| ||||| ||||| ||||| |||||||||||||    
T  2330996 aaagagataaagatgatgccatttggagctgggaggagaatttgtcctggatataatttagctttgcttcatttggaatattttgtggctaatttggttt 2331095  T
Q  501 tgaactttgagtggaag 517  Q
     ||| || || ||||||    
T  2331096 ggaatttcgattggaag 2331112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 404 - 517
Target Start/End: Original strand, 2303729 - 2303842
Alignment:
Q  404 gagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttttga 503  Q
    |||||||||||||||||||||| ||| |  ||||| |||||||||||   ||| || ||  |||||||||||||||| ||||| ||||||||||||| ||    
T  2303729 gagataaagatgatgccgtttgaagctgaaaggagaatttgtcctgcacttaatttagctttgctccatttagaatattttgtggctaatttggtttgga 2303828  T
Q  504 actttgagtggaag 517  Q
    | || || ||||||    
T  2303829 atttcgattggaag 2303842  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 401 - 517
Target Start/End: Original strand, 2327281 - 2327397
Alignment:
Q  401 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 500  Q
    |||||||| |||||||||||||||||||| || ||||| |||||||| |  ||||| || ||  | |||||||| ||||| ||||| |||||||||||||    
T  2327281 aaagagatcaagatgatgccgtttggagctggtaggagaatttgtccgggatataatttagctttactccatttggaatattttgtggctaatttggttt 2327380  T
Q  501 tgaactttgagtggaag 517  Q
     ||| || || ||||||    
T  2327381 ggaatttcgattggaag 2327397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 224 - 288
Target Start/End: Original strand, 2330840 - 2330904
Alignment:
Q  224 gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcaga 288  Q
    |||||| | |||||||||||||| |||||||||||| ||||||| |||||||||||||| |||||    
T  2330840 gaggatgtggttttgaatggttatttggtgcctaaagatgggacggtgaattttatggttgcaga 2330904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 242 - 346
Target Start/End: Original strand, 2351164 - 2351268
Alignment:
Q  242 ggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatcctacggtgtttaagccagaga 341  Q
    ||||| |||||||||||||||||||| || ||||||||||||||||| || || |   ||||    |||||||||||||| | || ||||||||||||||    
T  2351164 ggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctcgtgtttgggaggatccaatggagtttaagccagaga 2351263  T
Q  342 ggttt 346  Q
    |||||    
T  2351264 ggttt 2351268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 401 - 517
Target Start/End: Original strand, 2310444 - 2310560
Alignment:
Q  401 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 500  Q
    ||||||||||||||||||||||||||||| || || || |||||||| |    ||| || ||  |||||||||| ||||| ||||| |||||||||||||    
T  2310444 aaagagataaagatgatgccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaatttggttt 2310543  T
Q  501 tgaactttgagtggaag 517  Q
     ||| || || ||||||    
T  2310544 ggaatttcgattggaag 2310560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 401 - 500
Target Start/End: Original strand, 2321428 - 2321527
Alignment:
Q  401 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 500  Q
    ||||||||||||||||||||||||||||| || ||||| |||||||| |    ||| || ||  |||||||||| ||||| ||||| ||||| |||||||    
T  2321428 aaagagataaagatgatgccgtttggagctggaaggagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggttt 2321527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 224 - 346
Target Start/End: Original strand, 2303570 - 2303692
Alignment:
Q  224 gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatataggattaaatccaacggtttgggaggatccta 323  Q
    |||||| | |||||||| ||||| |||||||||||||||||||| |||||||| ||| |||| || || || |   ||||    |||||||||||||| |    
T  2303570 gaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctggcggagatggggtgggatcctcgtgtttgggaggatccaa 2303669  T
Q  324 cggtgtttaagccagagaggttt 346  Q
     || |||||||||||| ||||||    
T  2303670 tggagtttaagccagaaaggttt 2303692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 401 - 517
Target Start/End: Original strand, 2294113 - 2294229
Alignment:
Q  401 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcctgcctataaattggcaatgctccatttagaatactttgttgctaatttggttt 500  Q
    ||||||||||||||||||||||||||||| || || || |||||||| |    ||| || ||  |||||||||| ||||| ||||| ||||| |||||||    
T  2294113 aaagagataaagatgatgccgtttggagctggaagaagaatttgtcccggacttaatttagctttgctccatttggaatattttgtggctaacttggttt 2294212  T
Q  501 tgaactttgagtggaag 517  Q
     ||| || || ||||||    
T  2294213 ggaatttcgattggaag 2294229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 2321272 - 2321324
Alignment:
Q  224 gaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattt 276  Q
    |||||| | |||||||| ||||| |||||||||||||||||||| ||||||||    
T  2321272 gaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaattt 2321324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 189
Target Start/End: Original strand, 2293848 - 2293922
Alignment:
Q  115 ggaagtgagagaggaagatttgtagaaattgccatatttgaaggctgtgattttggaagggttaaggcgtcatcc 189  Q
    |||||||| ||||||||| ||| ||||| | |  |||||||||  |||| ||||||||||||| |||||||||||    
T  2293848 ggaagtgaaagaggaagacttgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatcc 2293922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 586
Target Start/End: Original strand, 2294246 - 2294295
Alignment:
Q  537 atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca 586  Q
    ||||||||||||| |||| ||||||||| || |||||||||||| |||||    
T  2294246 atgttgatttgacggaaatacaagaattcaccatggtgatgaaaaatcca 2294295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 537 - 586
Target Start/End: Original strand, 2310577 - 2310626
Alignment:
Q  537 atgttgatttgacagaaaaacaagaatttacaatggtgatgaaatatcca 586  Q
    ||||||||||||| |||| ||||||||| || |||||||||||| |||||    
T  2310577 atgttgatttgacggaaatacaagaattcactatggtgatgaaaaatcca 2310626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 401 - 447
Target Start/End: Original strand, 55017087 - 55017133
Alignment:
Q  401 aaagagataaagatgatgccgtttggagcagggaggaggatttgtcc 447  Q
    |||||||| ||||||||||||||||| || |||||||||||||||||    
T  55017087 aaagagatgaagatgatgccgtttggtgctgggaggaggatttgtcc 55017133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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