View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3048_low_33 (Length: 281)

Name: NF3048_low_33
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3048_low_33
NF3048_low_33
[»] chr3 (23 HSPs)
chr3 (18-264)||(45699890-45700136)
chr3 (181-264)||(20501727-20501809)
chr3 (171-263)||(26411566-26411658)
chr3 (181-230)||(26481958-26482007)
chr3 (161-261)||(32651403-32651503)
chr3 (146-230)||(37051290-37051374)
chr3 (161-264)||(47824126-47824230)
chr3 (154-264)||(5499369-5499479)
chr3 (149-242)||(37788449-37788542)
chr3 (148-264)||(34928903-34929019)
chr3 (178-242)||(51222150-51222214)
chr3 (148-235)||(203088-203175)
chr3 (149-264)||(4222140-4222255)
chr3 (181-264)||(8075089-8075172)
chr3 (181-264)||(10445101-10445184)
chr3 (181-264)||(30715773-30715855)
chr3 (230-264)||(23244984-23245018)
chr3 (154-243)||(14186652-14186740)
chr3 (181-242)||(40063650-40063711)
chr3 (183-264)||(52769945-52770026)
chr3 (196-264)||(14339656-14339724)
chr3 (200-264)||(26988199-26988263)
chr3 (181-264)||(54990733-54990816)
[»] chr5 (12 HSPs)
chr5 (161-261)||(18437096-18437196)
chr5 (154-242)||(21549121-21549209)
chr5 (149-264)||(16773806-16773921)
chr5 (174-230)||(7921038-7921094)
chr5 (181-257)||(17761324-17761400)
chr5 (174-264)||(17155848-17155936)
chr5 (218-264)||(29075849-29075895)
chr5 (174-264)||(40281054-40281144)
chr5 (216-264)||(4793042-4793090)
chr5 (181-257)||(22020831-22020907)
chr5 (154-242)||(26078035-26078123)
chr5 (154-242)||(34984810-34984898)
[»] chr1 (25 HSPs)
chr1 (188-264)||(13578679-13578755)
chr1 (196-264)||(3799952-3800020)
chr1 (155-264)||(21547442-21547551)
chr1 (154-242)||(9165179-9165267)
chr1 (154-257)||(51814498-51814601)
chr1 (154-264)||(33700735-33700845)
chr1 (161-242)||(8177166-8177247)
chr1 (196-257)||(40814377-40814438)
chr1 (196-264)||(1600254-1600322)
chr1 (180-264)||(29056408-29056492)
chr1 (154-230)||(36371474-36371550)
chr1 (181-264)||(11063587-11063670)
chr1 (161-264)||(52336736-52336839)
chr1 (150-264)||(14787298-14787412)
chr1 (174-264)||(28411354-28411444)
chr1 (174-264)||(42983336-42983426)
chr1 (186-264)||(50919990-50920068)
chr1 (219-264)||(1094594-1094639)
chr1 (216-257)||(2220038-2220079)
chr1 (223-264)||(11068805-11068846)
chr1 (171-264)||(12587291-12587383)
chr1 (196-264)||(521264-521327)
chr1 (154-230)||(4566552-4566628)
chr1 (236-264)||(12036373-12036401)
chr1 (196-264)||(24047064-24047132)
[»] chr8 (21 HSPs)
chr8 (154-261)||(19703452-19703559)
chr8 (182-264)||(40791857-40791939)
chr8 (154-264)||(40872880-40872990)
chr8 (148-264)||(968360-968476)
chr8 (154-264)||(20994419-20994530)
chr8 (154-264)||(16852344-16852454)
chr8 (147-264)||(18540295-18540412)
chr8 (161-228)||(18546360-18546427)
chr8 (185-264)||(35826346-35826425)
chr8 (147-229)||(6569768-6569850)
chr8 (154-264)||(30483846-30483956)
chr8 (190-264)||(31408084-31408158)
chr8 (174-263)||(3305151-3305240)
chr8 (142-243)||(18897158-18897259)
chr8 (218-262)||(3129828-3129872)
chr8 (154-230)||(3624584-3624660)
chr8 (216-264)||(15948011-15948059)
chr8 (200-264)||(27979207-27979271)
chr8 (200-264)||(28036476-28036540)
chr8 (216-264)||(31087220-31087268)
chr8 (196-264)||(33727835-33727903)
[»] chr2 (19 HSPs)
chr2 (154-257)||(19244113-19244216)
chr2 (174-264)||(23230567-23230657)
chr2 (154-264)||(29503275-29503384)
chr2 (154-242)||(40416374-40416462)
chr2 (149-257)||(42327364-42327472)
chr2 (173-264)||(27244331-27244422)
chr2 (181-264)||(33582004-33582087)
chr2 (154-264)||(37480079-37480189)
chr2 (154-264)||(42602558-42602668)
chr2 (217-255)||(3890371-3890409)
chr2 (222-264)||(18372850-18372892)
chr2 (171-264)||(31573603-31573696)
chr2 (149-242)||(42922413-42922507)
chr2 (154-230)||(16918574-16918650)
chr2 (216-264)||(16951444-16951492)
chr2 (216-264)||(17022109-17022157)
chr2 (196-264)||(21195638-21195706)
chr2 (154-206)||(33962804-33962856)
chr2 (154-242)||(34041572-34041660)
[»] chr7 (18 HSPs)
chr7 (156-264)||(21877814-21877922)
chr7 (154-264)||(2495798-2495908)
chr7 (154-264)||(26459372-26459482)
chr7 (174-264)||(45228987-45229077)
chr7 (154-243)||(23552122-23552211)
chr7 (174-264)||(24438209-24438299)
chr7 (181-264)||(11720922-11721005)
chr7 (181-264)||(43590938-43591021)
chr7 (174-264)||(21558152-21558242)
chr7 (154-264)||(23301564-23301674)
chr7 (218-264)||(41975955-41976001)
chr7 (154-264)||(45976885-45976995)
chr7 (211-264)||(37085511-37085564)
chr7 (181-262)||(38374563-38374644)
chr7 (174-254)||(22760887-22760967)
chr7 (174-242)||(25655212-25655280)
chr7 (154-234)||(30442492-30442572)
chr7 (154-242)||(39631848-39631936)
[»] chr6 (12 HSPs)
chr6 (154-242)||(12188287-12188375)
chr6 (199-264)||(2484769-2484834)
chr6 (188-264)||(16535222-16535298)
chr6 (174-264)||(6385886-6385976)
chr6 (174-264)||(24641152-24641242)
chr6 (196-264)||(11103397-11103465)
chr6 (161-264)||(12234469-12234572)
chr6 (181-264)||(20213072-20213155)
chr6 (181-264)||(22107095-22107178)
chr6 (181-264)||(33549135-33549218)
chr6 (232-264)||(13441139-13441171)
chr6 (216-264)||(18263906-18263954)
[»] scaffold0238 (1 HSPs)
scaffold0238 (181-264)||(5224-5307)
[»] scaffold0006 (1 HSPs)
scaffold0006 (185-264)||(162971-163050)
[»] chr4 (17 HSPs)
chr4 (181-264)||(37274421-37274504)
chr4 (199-264)||(27104990-27105055)
chr4 (154-242)||(7292782-7292870)
chr4 (154-242)||(37109335-37109423)
chr4 (181-264)||(23377987-23378070)
chr4 (192-257)||(19531971-19532036)
chr4 (171-264)||(41047499-41047590)
chr4 (216-264)||(51948546-51948594)
chr4 (161-264)||(306273-306375)
chr4 (181-264)||(7949416-7949499)
chr4 (154-257)||(41683753-41683856)
chr4 (174-264)||(8714703-8714793)
chr4 (174-240)||(52254390-52254456)
chr4 (174-264)||(53496901-53496991)
chr4 (216-257)||(22096577-22096618)
chr4 (181-257)||(49262653-49262729)
chr4 (196-264)||(51969063-51969131)
[»] scaffold0258 (1 HSPs)
scaffold0258 (181-264)||(15285-15368)
[»] scaffold0211 (1 HSPs)
scaffold0211 (154-264)||(24057-24167)
[»] scaffold0187 (2 HSPs)
scaffold0187 (161-264)||(12383-12487)
scaffold0187 (161-264)||(22711-22815)
[»] scaffold0008 (1 HSPs)
scaffold0008 (216-264)||(49372-49420)


Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 45700136 - 45699890
Alignment:
Q  18 aatattacattctcttattaataggcaagtgcaattgttttaatggctccatgataaacttccattcgaacctatcatatgttttctgaataatataatt 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45700136 aatattacattctcttattaataggcaagtgcaattgttctaatggctccatgataaacttccattcgaacctatcatatgttttctgaataatataatt 45700037  T
Q  118 gaatatcttcctcaacatgtcaccttcctatgaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgag 217  Q
    ||||||||||||||||||||||||||  |||||||||||||| |||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||    
T  45700036 gaatatcttcctcaacatgtcaccttattatgaactcacttgtgttggcctattggtattgatttgggacttgagagtgtgctcctccttaaagtttgag 45699937  T
Q  218 gttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
     ||||||||||||| |||||||||||| |||||||||||||||||||    
T  45699936 attcgattctctcgtgtgccaatttaagtgggctaatttaacttctt 45699890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 20501727 - 20501809
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||||||| |||||||||||||| || | ||||||||||||||| |||||||||||  | ||||||||||| ||||||    
T  20501727 ttgggacctgagagtgtgctcctccttaaggtctcaggttcgattctctccagtgccaattt-gaggggctaatttagcttctt 20501809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 171 - 263
Target Start/End: Original strand, 26411566 - 26411658
Alignment:
Q  171 tgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattc-tctcgagtgccaatttaaatgggctaatttaacttct 263  Q
    ||||||||| |||||||||||||| |||||||| || || |||| | ||||||||| ||||| ||||||||||  ||||||||||||| |||||    
T  26411566 tgatattgacttgggacctgagagtgtgctccttctcaatgtttcaagttcgattcttctcg-gtgccaatttggatgggctaatttagcttct 26411658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 26481958 - 26482007
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctc 230  Q
    |||||||||||||| ||||||||||| ||||||| |||||||||||||||    
T  26481958 ttgggacctgagagtgtgctcctcctcaaagttttaggttcgattctctc 26482007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 261
Target Start/End: Complemental strand, 32651503 - 32651403
Alignment:
Q  161 gttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaact 260  Q
    ||||||||| || |||||  |||||||||| ||| ||||||||||| ||  | | || |||||||||||| |||| ||||||| |||||||| |||||||    
T  32651503 gttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaagatctcagattcgattctctctagtgtcaatttagatgggctagtttaact 32651404  T
Q  261 t 261  Q
    |    
T  32651403 t 32651403  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 146 - 230
Target Start/End: Complemental strand, 37051374 - 37051290
Alignment:
Q  146 tatgaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctc 230  Q
    ||||||| |||||| ||||   || |||||||||||||||| ||| ||| ||| ||||||||||||| | |||||||||||||||    
T  37051374 tatgaacccacttgggttgatttagtgatattgatttgggatctgggagtgtgttcctccttaaagtctcaggttcgattctctc 37051290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 161 - 264
Target Start/End: Original strand, 47824126 - 47824230
Alignment:
Q  161 gttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgcc-aatttaaatgggctaatttaac 259  Q
    ||||||||| ||||||| |||||||| ||||||| || |||||||| ||||| |   |||||||||||||   |||| |||||| ||||||||||||| |    
T  47824126 gttggcctagtgatattaatttgggatctgagagtgtactcctcctcaaagtctctagttcgattctctctgctgccaaatttagatgggctaatttagc 47824225  T
Q  260 ttctt 264  Q
    |||||    
T  47824226 ttctt 47824230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 5499479 - 5499369
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||  || |||||| ||| || ||||||| |||||||||||||| || | |||||| |||||| |  |||||||||| ||| | ||||    
T  5499479 cacttgggttggcctggtggtattgacttgagatctgagagtgtgctcctccttaaggtctaaggttctattctccccggtgccaatttcaatagactaa 5499380  T
Q  254 tttaacttctt 264  Q
    |||| ||||||    
T  5499379 tttagcttctt 5499369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 149 - 242
Target Start/End: Complemental strand, 37788542 - 37788449
Alignment:
Q  149 gaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||| |||||| ||||||| | || |||||| |||| ||||  ||| ||||||||||| || || | ||||||||||||||| |||||||||||    
T  37788542 gaacccacttgggttggcccagtggtattgacttggaacctaggagtgtgctcctcctcaaggtctcaggttcgattctctctagtgccaattt 37788449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 264
Target Start/End: Complemental strand, 34929019 - 34928903
Alignment:
Q  148 tgaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatg 247  Q
    |||||| ||||| ||||  ||| |||||| || || |||||||||||  ||||||||||||| || | || |||||||||||| | ||| |||||||  |    
T  34929019 tgaactgacttgggttgatctagtgatatggacttaggacctgagagtatgctcctccttaaggtctcagattcgattctctctaatgctaatttaagag 34928920  T
Q  248 ggctaatttaacttctt 264  Q
     | ||||||||||||||    
T  34928919 agttaatttaacttctt 34928903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 242
Target Start/End: Original strand, 51222150 - 51222214
Alignment:
Q  178 gatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    ||||||||||||||||  ||| | ||||||||||| | |||||||||||||||  ||||||||||    
T  51222150 gatttgggacctgagaatgtgtttctccttaaagtctcaggttcgattctctctcgtgccaattt 51222214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 148 - 235
Target Start/End: Original strand, 203088 - 203175
Alignment:
Q  148 tgaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtg 235  Q
    ||||| |||||| ||||||||| || |||||| |||||| | | ||| |||||  ||||||| ||||||||||||||| |||| ||||    
T  203088 tgaacccacttgggttggcctagtggtattgacttgggatcagggagtgtgcttttccttaaggtttgaggttcgattatctctagtg 203175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 264
Target Start/End: Original strand, 4222140 - 4222255
Alignment:
Q  149 gaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgg 248  Q
    |||| |||||| |||||| || || |||||  |||||| ||| ||| ||||||||||| ||||| | |||||||||||||||  ||| |||||||  ||     
T  4222140 gaacccacttgggttggcttagtggtattggcttgggatctgggagtgtgctcctcctcaaagtcttaggttcgattctctctggtgtcaatttaggtga 4222239  T
Q  249 gctaatttaacttctt 264  Q
    | || |||||||||||    
T  4222240 gttagtttaacttctt 4222255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 8075172 - 8075089
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||| || ||| ||||||||||| || |||| ||||||||||| ||| |||| ||||||   |||||||||||| ||||||    
T  8075172 ttgggacttgggagtgtgctcctcctcaaggtttcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttctt 8075089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 10445184 - 10445101
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||| ||| |||||||||||  | || | |||||||||||||||  |||| ||||| | |||||||||||| ||||||    
T  10445184 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctggtgctaatttgagtgggctaatttagcttctt 10445101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 30715773 - 30715855
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||| || ||| ||||||||||| || |||| |||||||||||||||  ||||||||||  |||||||| |||| ||||||    
T  30715773 ttgggacttgggagtgtgctcctcctcaatgtttcaggttcgattctctc-cgtgccaatttggatgggctagtttagcttctt 30715855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 264
Target Start/End: Complemental strand, 23245018 - 23244984
Alignment:
Q  230 cgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||| ||||||||||||||||||||||||||||    
T  23245018 cgagtgtcaatttaaatgggctaatttaacttctt 23244984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 14186652 - 14186740
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattta 243  Q
    |||||| ||||||||| || |||||  |||||||||| ||| ||||||||||| || || | |||||||||||||||  ||| |||||||    
T  14186652 cacttgggttggcctagtggtattgtcttgggacctg-gagtgtgctcctcctcaaggtctcaggttcgattctctccggtgtcaattta 14186740  T

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Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 40063650 - 40063711
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||||| |||||||  ||||||||||||| || | | ||||||||||||| |||||||||||    
T  40063650 ttgggatctgagagtatgctcctccttaaggtctcaagttcgattctctccagtgccaattt 40063711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 264
Target Start/End: Complemental strand, 52770026 - 52769945
Alignment:
Q  183 gggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||| ||| ||| |||||||||||| | || | ||||||||||||||  |||| |||||||  |||||||||||| ||||||    
T  52770026 gggatctgggagtgtgctcctccttgaggtctcaggttcgattctctttagtgtcaatttaggtgggctaatttagcttctt 52769945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 14339656 - 14339724
Alignment:
Q  196 gtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||| || || | ||||||||||||| | |||||||||| |  |||||||||||| ||||||    
T  14339656 gtgctcctcctcaatgtctcaggttcgattctccctagtgccaattaaggtgggctaatttagcttctt 14339724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 26988199 - 26988263
Alignment:
Q  200 tcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||| | ||||||||||||||||  |||  ||||||  ||| ||||||||||||||||    
T  26988199 tcctccttaaaatctgaggttcgattctcttcagtatcaatttggatgagctaatttaacttctt 26988263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 54990733 - 54990816
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattct-ctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||  ||||||||||||||| || || | |||||||||||| ||||| || |||||||  |||||||||||| ||||||    
T  54990733 ttgggaccttggagcgtgctcctcctcaaggtctcaggttcgattctcctcga-tggcaatttaggtgggctaatttagcttctt 54990816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 18437096 - 18437196
Alignment:
Q  161 gttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaact 260  Q
    ||||||||| || |||| | ||||||| |||||| ||||||||||| |||||||  |||||||||||||| |||||||||||| |||| |||||||||||    
T  18437096 gttggcctagtggtattaacttgggacttgagagtgtgctcctcctcaaagtttcgggttcgattctctctagtgccaatttagatggactaatttaact 18437195  T
Q  261 t 261  Q
    |    
T  18437196 t 18437196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 21549209 - 21549121
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||||| ||||||||| || |||||  |||||||||| ||| ||||||||||||||||| | | |||||||| |||| |||||||||||    
T  21549209 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctccttaaagtctcaagttcgattttctctagtgccaattt 21549121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 149 - 264
Target Start/End: Original strand, 16773806 - 16773921
Alignment:
Q  149 gaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgg 248  Q
    |||| |||||| ||||| ||  || |||||| |||||||||| ||| |||||||||||  | || | |||||||||||||||   ||||||||||  |||    
T  16773806 gaacccacttgagttggtctggtggtattgacttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctctgatgccaatttaggtgg 16773905  T
Q  249 gctaatttaacttctt 264  Q
    ||||||||| ||||||    
T  16773906 gctaatttagcttctt 16773921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 230
Target Start/End: Complemental strand, 7921094 - 7921038
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctc 230  Q
    |||||||||||||  | |||| |||||| |||||||| |||||||||||||||||||    
T  7921094 tattgatttgggatgtaagagtgtgctcttccttaaattttgaggttcgattctctc 7921038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 17761400 - 17761324
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaattta 257  Q
    |||||| ||| ||| |||||||||||| |||||| ||| ||||||||||   ||||||||||| ||||| |||||||    
T  17761400 ttgggatctgggagtgtgctcctccttgaagttttaggatcgattctcttcggtgccaatttagatgggttaattta 17761324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 17155848 - 17155936
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||| |||||||||||||||  |||||||||| || || | ||||| ||||||||    ||||||||| | |||||||||||||||||||    
T  17155848 tattggtttgggacctgagag--tgctcctcctcaaggtctcaggtttgattctctgtgctgccaatttgagtgggctaatttaacttctt 17155936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 29075849 - 29075895
Alignment:
Q  218 gttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||||||  ||||||||||| ||||||||||||| ||||||    
T  29075849 gttcgattctctctggtgccaatttagatgggctaatttagcttctt 29075895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 40281144 - 40281054
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||||||  |||||| |||||||||||||| ||||||| || ||| ||||| | ||| ||||||  |||  |||||||| |||||    
T  40281144 tattgatttgggatatgagagtgtgctcctccttaaggtttgagatttgatactctctaatgctaatttaggtggattaatttaatttctt 40281054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 4793090 - 4793042
Alignment:
Q  216 aggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||||| | ||||||||||||  |||||||||||| ||||||    
T  4793090 aggttcgattctccccagtgccaatttaggtgggctaatttagcttctt 4793042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 22020907 - 22020831
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaattta 257  Q
    |||||| ||| ||| |||||||||||| |||| | || |||||||||||| ||||  ||||||  ||||||||||||    
T  22020907 ttgggatctgggagtgtgctcctccttgaagtctcagattcgattctctccagtgttaatttaggtgggctaattta 22020831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 26078123 - 26078035
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||||| ||||||||| || ||||| |||||||| || |||  |||| ||| | || || | ||||||||||||||| |||||||||||    
T  26078123 cacttgggttggcctagtggtattggtttgggacttgggagtatgcttctcttcaaggtctcaggttcgattctctctagtgccaattt 26078035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 34984810 - 34984898
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||||| ||||| ||| || |||||  |||| ||||| ||| ||||||||||| || || | |||||||||||||||  ||||||||||    
T  34984810 cacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtcttaggttcgattctctctggtgccaattt 34984898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 13578755 - 13578679
Alignment:
Q  188 ctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||| ||||||||||||||| | ||||||||||||||||   ||||||||||| ||||||||| ||||||||||    
T  13578755 ctgagagtgtgctcctccttaaaatctgaggttcgattctcttcggtgccaatttagatgggctaacttaacttctt 13578679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 3799952 - 3800020
Alignment:
Q  196 gtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||||  |||||| ||||||||||||||| ||||||||||||  |||||||||||| ||||||    
T  3799952 gtgctcctcctcgaagtttcaggttcgattctctctagtgccaatttaggtgggctaatttagcttctt 3800020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 155 - 264
Target Start/End: Complemental strand, 21547551 - 21547442
Alignment:
Q  155 acttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaat 254  Q
    ||||| ||||||||| || |||||  ||||||| || ||| |||||||||||  | |||| |||||||||||||||   ||||||||||  ||||||| |    
T  21547551 acttgggttggcctagtggtattggcttgggacatgggagggtgctcctcctcgaggtttcaggttcgattctctctgatgccaatttaggtgggctagt 21547452  T
Q  255 ttaacttctt 264  Q
    ||||||||||    
T  21547451 ttaacttctt 21547442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 9165267 - 9165179
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||||| ||||||||| || |||||  |||||||||| ||| ||||||||||| ||||| | |||||| ||||||||  ||||||||||    
T  9165267 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaagtctcaggttcaattctctctggtgccaattt 9165179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 257
Target Start/End: Original strand, 51814498 - 51814601
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||  || |||||| ||| || ||||||| ||||||||||| || || | |||||||||||||||  ||||||||||   ||||||||    
T  51814498 cacttgggttggcctgatggtattgacttgagatctgagagtgtgctcctcctcaaggtctcaggttcgattctctccggtgccaatttgggtgggctaa 51814597  T
Q  254 ttta 257  Q
    ||||    
T  51814598 ttta 51814601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 33700845 - 33700735
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||| || |||||  |||| | ||| ||| ||||||||||| || || | |||||||||||||||  ||||||||||||  ||| ||     
T  33700845 cacttgggttggcctagtggtattggcttggaatctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttaagggggttag 33700746  T
Q  254 tttaacttctt 264  Q
    |||||||||||    
T  33700745 tttaacttctt 33700735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 161 - 242
Target Start/End: Complemental strand, 8177247 - 8177166
Alignment:
Q  161 gttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    ||||||||| || |||||  |||||| ||| ||| ||||||||||| || |||| |||||||||||||||  ||||||||||    
T  8177247 gttggcctagtggtattggcttgggatctgggagtgtgctcctcctcaaggtttcaggttcgattctctctggtgccaattt 8177166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 257
Target Start/End: Complemental strand, 40814438 - 40814377
Alignment:
Q  196 gtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaattta 257  Q
    |||||| ||||| | |||| ||||||||||||||| |||| |||||||| ||||||||||||    
T  40814438 gtgctcatccttgaggtttcaggttcgattctctctagtgtcaatttaagtgggctaattta 40814377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 1600322 - 1600254
Alignment:
Q  196 gtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||||||||||| |||||||||||||||  ||| ||||||  |||| |||| ||| ||||||    
T  1600322 gtgctcctccttaaagtttcaggttcgattctctctggtgtcaatttggatggactaacttagcttctt 1600254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 264
Target Start/End: Original strand, 29056408 - 29056492
Alignment:
Q  180 tttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||| ||| |||||| |||| ||  ||| |||||||||| ||||   |||||||||||| ||| ||||||||||||||    
T  29056408 tttgggacctgggagtgtgctcatcctgaagttttcaggttcgattatctctgatgccaatttaaaagggttaatttaacttctt 29056492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 36371474 - 36371550
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctc 230  Q
    |||||| ||||||||| || |||||  |||| ||||| ||| ||||||||||| || || |||||||||||||||||    
T  36371474 cacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaggtctgaggttcgattctctc 36371550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 11063587 - 11063670
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||| || ||| ||||||| || || | ||||||||||||||| ||||||||||| || ||| || |||| ||||||    
T  11063587 ttgggacctgaaagtgtgttcctcctcaaggtcttaggttcgattctctctagtgccaatttgaaggggttagtttagcttctt 11063670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 52336839 - 52336736
Alignment:
Q  161 gttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaact 260  Q
    ||||||||| || |||||  |||||| ||| ||| ||||||||||||||  | | |||||||||| ||||  ||| ||||||  |||||||||||||| |    
T  52336839 gttggcctagtggtattggcttgggatctgggagtgtgctcctccttaagatctcaggttcgattatctctggtgtcaatttggatgggctaatttaatt 52336740  T
Q  261 tctt 264  Q
    ||||    
T  52336739 tctt 52336736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 264
Target Start/End: Complemental strand, 14787412 - 14787298
Alignment:
Q  150 aactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatggg 249  Q
    |||||||||| |||| |||| || |||||| ||| |||||||||| ||| | ||||| || || | ||||||||||||||| | |  |||||||| ||||    
T  14787412 aactcacttgagttgacctagtggtattgacttgagacctgagagtgtgtttctcctcaaggtgtcaggttcgattctctctaatatcaatttaagtggg 14787313  T
Q  250 ctaatttaacttctt 264  Q
     || |||| ||||||    
T  14787312 ttagtttagcttctt 14787298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 28411354 - 28411444
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||| ||||||  |||||| ||||||||| || | || | || ||| ||||||||  ||||||||||||||| ||| ||||||||||||    
T  28411354 tattgacttgggatatgagagtgtgctcctctttgaggtctcagattcaattctctctggtgccaatttaaatgagctcatttaacttctt 28411444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 42983426 - 42983336
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||| ||| || ||| ||| ||| |||||||| | ||  ||||||||||||||||  |||||||||||| ||| |||||||| ||||||    
T  42983426 tattgacttgagatctgggagtgtggtcctccttgaggtccgaggttcgattctctcaggtgccaatttaagtggactaatttagcttctt 42983336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 50919990 - 50920068
Alignment:
Q  186 acctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||| |||||| ||||||| |||| |||||||||||||||  ||| |||||| || ||| || |||| ||||||    
T  50919990 acctgagagtgtgctcatccttaaggtttcaggttcgattctctctggtgtcaatttgaaggggttagtttagcttctt 50920068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 1094594 - 1094639
Alignment:
Q  219 ttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||||  |||||||||||  |||||||||||||||||||    
T  1094594 ttcgattctctccggtgccaatttaggtgggctaatttaacttctt 1094639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Original strand, 2220038 - 2220079
Alignment:
Q  216 aggttcgattctctcgagtgccaatttaaatgggctaattta 257  Q
    ||||||||||||||| | || |||||||||||||||||||||    
T  2220038 aggttcgattctctccaatgtcaatttaaatgggctaattta 2220079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 11068846 - 11068805
Alignment:
Q  223 attctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||| |||| ||||||||||||||||||||| ||||||    
T  11068846 attctctccagtgtcaatttaaatgggctaatttagcttctt 11068805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 12587291 - 12587383
Alignment:
Q  171 tgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||| |||||| ||| ||| |||||||||||  | || | |||||||||||||||  ||| |||||||  |||||||||||| ||||||    
T  12587291 tgatattgacttgggatctgtgagtgtgctcctcctcgaggtctcaggttcgattctctccggtg-caatttaggtgggctaatttagcttctt 12587383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 521264 - 521327
Alignment:
Q  196 gtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||||||||| | |||||||||| ||     ||||||||| ||||| |||||||||||||||    
T  521264 gtgctcctccttaaagtctcaggttcgattatc-----tgccaatttgaatggactaatttaacttctt 521327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 4566552 - 4566628
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctc 230  Q
    |||||| ||||||||| ||||||||  |||| ||||| ||| ||||||||||| |  || | |||||||||||||||    
T  4566552 cacttgggttggcctagtgatattggcttggaacctgggagtgtgctcctcctcagggtctcaggttcgattctctc 4566628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Original strand, 12036373 - 12036401
Alignment:
Q  236 ccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||||||||||||||||||||||    
T  12036373 ccaatttaaatgggctaatttaacttctt 12036401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 24047132 - 24047064
Alignment:
Q  196 gtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||||  | |||| | ||||||||||| | ||||||||||||  | |||||||||||||||||    
T  24047132 gtgctcctcctcgaggtttcaagttcgattctccccagtgccaatttaggttggctaatttaacttctt 24047064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 261
Target Start/End: Complemental strand, 19703559 - 19703452
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||| || |||||  |||||||||||||| ||||||||||| || || | ||||||||||||| | |||| ||||| |  ||||||||    
T  19703559 cacttgggttggcctagtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccctagtgtcaattaaggtgggctaa 19703460  T
Q  254 tttaactt 261  Q
    ||||||||    
T  19703459 tttaactt 19703452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 182 - 264
Target Start/End: Complemental strand, 40791939 - 40791857
Alignment:
Q  182 tgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||| |||  |||||||||||| |||| | |||||||||| |||| |||| |||||||| |||||||||||| ||||||    
T  40791939 tgggacctcagaatgtgctcctccttgaagtcttaggttcgattttctctagtgtcaatttaagtgggctaatttagcttctt 40791857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 40872880 - 40872990
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| |||||| |  |||||||||||| ||| || |||| ||||||||| | || |||| |||||| ||||||||  |||||||||||  |||||||     
T  40872880 cacttgggttggcatggtgatattgatttaggatcttagagtgtgctcctcttcaaggttttaggttccattctctccggtgccaatttaggtgggctag 40872979  T
Q  254 tttaacttctt 264  Q
    |||||||||||    
T  40872980 tttaacttctt 40872990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 264
Target Start/End: Original strand, 968360 - 968476
Alignment:
Q  148 tgaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatg 247  Q
    ||||| |||||| ||||||||  || |||||  |||||||||| ||| |||||||||||  | || | |||||||||||||||   ||||||||||  ||    
T  968360 tgaacccacttgagttggcctggtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctccgatgccaatttaggtg 968459  T
Q  248 ggctaatttaacttctt 264  Q
    |||||||||| ||||||    
T  968460 ggctaatttagcttctt 968476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 20994530 - 20994419
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctcctt-aaagtttgaggttcgattctctcgagtgccaatttaaatgggcta 252  Q
    |||||| ||||||||| || |||||| |||||||||| ||| |||||||||| | ||||| | ||| |||||| ||||  || |||||||  ||||||||    
T  20994530 cacttgggttggcctagtggtattgacttgggacctgggagtgtgctcctccctcaaagtctcaggatcgattatctctggtaccaatttggatgggcta 20994431  T
Q  253 atttaacttctt 264  Q
    ||||| ||||||    
T  20994430 atttagcttctt 20994419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 16852344 - 16852454
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||| || |||||  |||||||||| ||| |||||||||||  | || | |||||||||||||   ||||||||||||  |||||||     
T  16852344 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctccttagtgccaatttaggtgggctat 16852443  T
Q  254 tttaacttctt 264  Q
    |||| ||||||    
T  16852444 tttagcttctt 16852454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 264
Target Start/End: Original strand, 18540295 - 18540412
Alignment:
Q  147 atgaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaat 246  Q
    |||||| |||||| ||||||||| || |||||  |||||||||| ||| || || ||||| || || | |||||||||||||||  |||||||||| |      
T  18540295 atgaacccacttgggttggcctagtggtattggcttgggacctgggagtgtacttctcctcaaggtctcaggttcgattctctctggtgccaatttgaga 18540394  T
Q  247 gggctaatttaacttctt 264  Q
    ||| ||||||| ||||||    
T  18540395 gggttaatttagcttctt 18540412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 18546427 - 18546360
Alignment:
Q  161 gttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctc 228  Q
    ||||| ||| || |||||||||||||||||||||| ||||||||||  | || | |||||||||||||    
T  18546427 gttggtctagtggtattgatttgggacctgagagcatgctcctcctcgaggtctcaggttcgattctc 18546360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 264
Target Start/End: Original strand, 35826346 - 35826425
Alignment:
Q  185 gacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||| ||| |||||||||||||||||||  | |||||||||| |  ||| |||||||  ||| |||||||||||||||    
T  35826346 gacctgtgagtgtgctcctccttaaagtttcggattcgattctcaccggtgtcaatttaggtggactaatttaacttctt 35826425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 229
Target Start/End: Complemental strand, 6569850 - 6569768
Alignment:
Q  147 atgaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctct 229  Q
    |||||| |||||  ||||||||| ||||||||  |||||| ||| ||| |||||||||||| | |||| | ||||||||||||    
T  6569850 atgaacccacttaggttggcctagtgatattggcttgggatctgggagtgtgctcctcctttaggtttcatgttcgattctct 6569768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 30483956 - 30483846
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||| | || |||||  ||||||  || ||| ||||||||||| | ||| | |||||| ||||||||  |||||||||| ||||| ||||    
T  30483956 cacttgggttggcccagtggtattggcttgggatatgggagtgtgctcctcctcagagtctcaggttcaattctctcttgtgccaatttgaatggactaa 30483857  T
Q  254 tttaacttctt 264  Q
    |||| ||||||    
T  30483856 tttatcttctt 30483846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 264
Target Start/End: Complemental strand, 31408158 - 31408084
Alignment:
Q  190 gagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||| ||||||||||| || |||| ||||||||||||||| | || ||||||||  ||| ||||||| ||||||    
T  31408158 gagagtgtgctcctcctcaaggtttcaggttcgattctctctaatgtcaatttaagggggttaatttagcttctt 31408084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 263
Target Start/End: Complemental strand, 3305240 - 3305151
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttct 263  Q
    ||||| ||||||| ||| ||||||||||||||| || || | |  ||||||| ||||  |||||||||||  |||||||||||| |||||    
T  3305240 tattggtttgggatctgggagcgtgctcctcctcaaggtctcaaattcgattatctctggtgccaatttaggtgggctaatttatcttct 3305151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 18897158 - 18897259
Alignment:
Q  142 ttcctatgaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatt 241  Q
    ||||||| ||| |||||| ||||||||| || | ||| |||||||||| |||| ||||||||||| || || | | ||||||||||  |  |||||||||    
T  18897158 ttcctataaacccacttgggttggcctagtggtgttggtttgggaccttagagtgtgctcctcctcaaggtctcatgttcgattcttcctggtgccaatt 18897257  T
Q  242 ta 243  Q
    ||    
T  18897258 ta 18897259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 3129872 - 3129828
Alignment:
Q  218 gttcgattctctcgagtgccaatttaaatgggctaatttaacttc 262  Q
    ||||||||||||| |||| |||||||| |||||||||||| ||||    
T  3129872 gttcgattctctctagtgtcaatttaagtgggctaatttagcttc 3129828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Original strand, 3624584 - 3624660
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctc 230  Q
    |||||| ||||||||| || |||||  |||||||||| ||| ||||||||| | || || | |||||||||||||||    
T  3624584 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcttcaaggtctcaggttcgattctctc 3624660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 15948059 - 15948011
Alignment:
Q  216 aggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||||||| |||| || ||||| |||||||||||| ||||||    
T  15948059 aggttcgattctctccagtgtcattttaagtgggctaatttaccttctt 15948011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 27979207 - 27979271
Alignment:
Q  200 tcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||| ||||| | | |||||||| |||| |||| ||||||  ||||||||||||||||||||    
T  27979207 tcctcctcaaagtcttaagttcgattatctctagtgtcaatttggatgggctaatttaacttctt 27979271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 28036476 - 28036540
Alignment:
Q  200 tcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||| ||||| | | |||||||| |||| |||| ||||||  ||||||||||||||||||||    
T  28036476 tcctcctcaaagtcttaagttcgattatctctagtgtcaatttggatgggctaatttaacttctt 28036540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 31087268 - 31087220
Alignment:
Q  216 aggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||| ||||  ||| |||||||||| |||||||||||||||||    
T  31087268 aggttcgattatctccggtgtcaatttaaataggctaatttaacttctt 31087220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 33727903 - 33727835
Alignment:
Q  196 gtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||| || || | ||||||||||| ||| |||| ||||||  ||||||||||||| ||||||    
T  33727903 gtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggctaatttagcttctt 33727835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 257
Target Start/End: Original strand, 19244113 - 19244216
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||| ||| || |||||| |||||||||||||| ||||||||||  || || | |||||||||||||||  |||||||||| | ||||||||    
T  19244113 cacttgggttggtctactggtattgacttgggacctgagagtgtgctcctccccaaggtctcaggttcgattctctctggtgccaatttgagtgggctaa 19244212  T
Q  254 ttta 257  Q
    ||||    
T  19244213 ttta 19244216  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 23230657 - 23230567
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||||| ||| ||| ||||||||||| ||||||  |||||| |||||||| |||| ||||||  ||| ||||||||||||||||    
T  23230657 tattgatttgggaactgggagtgtgctcctcctcaaagttccaggttcaattctctccagtgtcaatttggatgagctaatttaacttctt 23230567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 29503275 - 29503384
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||| || ||||| ||||||||||| ||| ||||||||||| || || | ||||||||||||| || ||| |||||||| ||||| ||    
T  29503275 cacttgggttggcctagtggtattggtttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcccg-gtgtcaatttaagtgggcaaa 29503373  T
Q  254 tttaacttctt 264  Q
    |||| ||||||    
T  29503374 tttagcttctt 29503384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 40416462 - 40416374
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||||| ||||||||| || |||||| |||| ||||| |||  ||||||||||||| || | |||||||||||||||  ||||||||||    
T  40416462 cacttgggttggcctagtggtattgacttggaacctgggagtatgctcctccttaaggtctcaggttcgattctctctggtgccaattt 40416374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 257
Target Start/End: Complemental strand, 42327472 - 42327364
Alignment:
Q  149 gaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgg 248  Q
    |||| |||||| ||||||||| || |||||  |||||||||| ||| ||||||||||| || || | ||||||||||||||   ||||||||||   |||    
T  42327472 gaacccacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctcttcggtgccaatttgggtgg 42327373  T
Q  249 gctaattta 257  Q
    |||||||||    
T  42327372 gctaattta 42327364  T

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Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 264
Target Start/End: Original strand, 27244331 - 27244422
Alignment:
Q  173 atattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||||||||||| |||  ||||||||||  | |||| ||||||||||||||  ||||  ||||||| || ||||||||| ||||||    
T  27244331 atattgatttgggacctgggagtatgctcctcctcgaggtttaaggttcgattctcttcagtgttaatttaagtgagctaatttagcttctt 27244422  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 33582004 - 33582087
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||||||| |||||||||||| | || | ||||||||||||||| | || |||||||  ||| |||||||| ||||||    
T  33582004 ttgggacctgagagtgtgctcctccttgaggtctcaggttcgattctctctaatgtcaatttaggtggactaatttagcttctt 33582087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 37480079 - 37480189
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||  || |||||  |||||||||||||| ||||||||||| || || | ||||||||||||| |  || |||||||   ||||||||    
T  37480079 cacttgggttggcctggtggtattggcttgggacctgagagtgtgctcctcctcaaggtctcaggttcgattctccccggtcccaatttgggtgggctaa 37480178  T
Q  254 tttaacttctt 264  Q
    |||| ||||||    
T  37480179 tttagcttctt 37480189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 42602558 - 42602668
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||| || |||||  |||||||||| ||| |||||||| || || || | ||||| |||||||||  ||||||||||   ||||||||    
T  42602558 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctccttctcaaggtcttaggtttgattctctccggtgccaatttgggtgggctaa 42602657  T
Q  254 tttaacttctt 264  Q
    |||| ||||||    
T  42602658 tttagcttctt 42602668  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 217 - 255
Target Start/End: Original strand, 3890371 - 3890409
Alignment:
Q  217 ggttcgattctctcgagtgccaatttaaatgggctaatt 255  Q
    ||||||||||||||| ||||||||||| |||||||||||    
T  3890371 ggttcgattctctcgggtgccaatttagatgggctaatt 3890409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 18372850 - 18372892
Alignment:
Q  222 gattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||  |||| |||||||||||||||||||||||||||    
T  18372850 gattctctccggtgctaatttaaatgggctaatttaacttctt 18372892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 264
Target Start/End: Complemental strand, 31573696 - 31573603
Alignment:
Q  171 tgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctc-tcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||| |||| || ||||||| |||||||||||| | || | ||||||||||||| |||| || |||||||  ||| |||||||||||||||    
T  31573696 tgatattggtttgagatctgagagtgtgctcctccttgatgtctcaggttcgattctcttcga-tgtcaatttaggtggactaatttaacttctt 31573603  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 242
Target Start/End: Original strand, 42922413 - 42922507
Alignment:
Q  149 gaactcacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaa-gtttgaggttcgattctctcgagtgccaattt 242  Q
    |||| |||||| ||||||||| || |||||  |||| ||||| ||| ||||||||||| ||| || | |||||||||||||||  ||||||||||    
T  42922413 gaacccacttgggttggcctagtggtattggcttggaacctgggagtgtgctcctcctcaaaggtctcaggttcgattctctctggtgccaattt 42922507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 230
Target Start/End: Complemental strand, 16918650 - 16918574
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctc 230  Q
    |||||| ||||||||| || ||||| ||||||| ||| ||| ||||||||||| || || | ||||| |||||||||    
T  16918650 cacttgggttggcctagtggtattggtttgggatctgggagtgtgctcctcctcaaggtcttaggttggattctctc 16918574  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 16951444 - 16951492
Alignment:
Q  216 aggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||||||  | ||| |||||| ||||||||||||||||||||    
T  16951444 aggttcgattctcttcaatgctaatttagatgggctaatttaacttctt 16951492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 17022109 - 17022157
Alignment:
Q  216 aggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||||||  | ||| |||||| ||||||||||||||||||||    
T  17022109 aggttcgattctcttcaatgctaatttagatgggctaatttaacttctt 17022157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 21195706 - 21195638
Alignment:
Q  196 gtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||| || || | ||||||||||| ||| |||| ||||||  ||||||||||||| ||||||    
T  21195706 gtgctcctcctcaaggtctcaggttcgattccctctagtgtcaatttggatgggctaatttagcttctt 21195638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 206
Target Start/End: Complemental strand, 33962856 - 33962804
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctcct 206  Q
    |||||| ||||||||| |||||||| ||||||| ||| ||| |||||||||||    
T  33962856 cacttgggttggcctaatgatattggtttgggaactgggagtgtgctcctcct 33962804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 34041660 - 34041572
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||||| ||||||||| || |||||| || ||| ||||||| ||||||||||| || || | ||||| ||||| |||  ||||||||||    
T  34041660 cacttgggttggcctagtggtattgacttaggatctgagagtgtgctcctcctcaaggtctcaggtttgattccctctggtgccaattt 34041572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 156 - 264
Target Start/End: Original strand, 21877814 - 21877922
Alignment:
Q  156 cttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatt 255  Q
    |||| ||||||||| || |||||| |||||||||| ||| |||||||||||||| || | | |||||||||||    ||||||| || | ||||||||||    
T  21877814 cttgagttggcctagtggtattgacttgggacctgggagggtgctcctccttaaggtctcacgttcgattctccacggtgccaaattgagtgggctaatt 21877913  T
Q  256 taacttctt 264  Q
    |||||||||    
T  21877914 taacttctt 21877922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 2495908 - 2495798
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||| | ||||||| ||| ||  || ||| ||||||||||||||| | | |||||||||| |||| | |  ||||||||||||| |||    
T  2495908 cacttgagttggcctaataatattgacttgagatttgtgagtgtgctcctccttaaaatctcaggttcgattatctctaatatcaatttaaatgggttaa 2495809  T
Q  254 tttaacttctt 264  Q
    |||||||||||    
T  2495808 tttaacttctt 2495798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 26459482 - 26459372
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||| || |||||  |||||||||| ||| ||||||||||| || || | |||||||||||||||  |||||||||| || ||| ||     
T  26459482 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttgaaggggttag 26459383  T
Q  254 tttaacttctt 264  Q
    |||| ||||||    
T  26459382 tttagcttctt 26459372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 45229077 - 45228987
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||| ||||||||||  ||| ||||| || ||| | |||| ||||||||||||||| |||| |||||||| |||||||||||| ||||||    
T  45229077 tattggtttgggacctaggagtgtgcttcttcttgaggttttaggttcgattctctccagtgtcaatttaagtgggctaatttagcttctt 45228987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 154 - 243
Target Start/End: Original strand, 23552122 - 23552211
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattta 243  Q
    |||||| ||||||||| || |||||| |||||||||| ||| ||||||||||| || || | | ||||||||||||| | ||||||||||    
T  23552122 cacttgggttggcctagtgctattgacttgggacctgggagtgtgctcctcctcaaggtctcaagttcgattctctctaatgccaattta 23552211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 24438299 - 24438209
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||| |||||||| || ||| |||||| | ||||| |||| || ||||||||||||  ||| |||||| |||||||||||||| ||||||    
T  24438299 tattggtttgggacttgggagtgtgctctttcttaaggtttcagattcgattctctctggtgtcaatttgaatgggctaatttagcttctt 24438209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 11721005 - 11720922
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||| ||  |||||||||||||| || | || |||||||||| | |||||||||||   |||||||||||| ||||||    
T  11721005 ttgggacctgggaatgtgctcctccttaaggtatcagattcgattctccccagtgccaatttgggtgggctaatttagcttctt 11720922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 43590938 - 43591021
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||| || ||| ||||||||||| || || | ||||||||||||| | |||||||||| |  |||||||||||| ||||||    
T  43590938 ttgggacttgggagtgtgctcctcctcaatgtctcaggttcgattctccctagtgccaattaaggtgggctaatttagcttctt 43591021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 21558152 - 21558242
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||| |||| |||| |||  ||||||||||| || || | |||||||||||||||  |||||||||||  |||| ||||||| ||||||    
T  21558152 tattgacttggaacctaagaatgtgctcctcctcaaggtctcaggttcgattctctctggtgccaatttaggtgggttaatttagcttctt 21558242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 23301674 - 23301564
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||  || |||||| ||||||| || ||| |||||||||||| | || | | ||| ||||||||  ||||| ||||| | ||| ||||    
T  23301674 cacttgggttggcctggtggtattgacttgggacttgggagtgtgctcctccttgaggtctcaagtttgattctctttagtgctaatttgagtggactaa 23301575  T
Q  254 tttaacttctt 264  Q
    |||||||||||    
T  23301574 tttaacttctt 23301564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 264
Target Start/End: Original strand, 41975955 - 41976001
Alignment:
Q  218 gttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||||| |||| |||||||| |||||||||||| ||||||    
T  41975955 gttcgattctctctagtgtcaatttaagtgggctaatttagcttctt 41976001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 264
Target Start/End: Complemental strand, 45976995 - 45976885
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||| || |||||  ||| |||||| ||| |||||||||||||| |||| | ||||  || ||||   ||||||||||| | || |||    
T  45976995 cacttgggttggcctagtggtattggcttgtgacctgggagtgtgctcctccttaaggttttaagttcatttatctctgatgccaatttaagtaggttaa 45976896  T
Q  254 tttaacttctt 264  Q
    |||||||||||    
T  45976895 tttaacttctt 45976885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 264
Target Start/End: Complemental strand, 37085564 - 37085511
Alignment:
Q  211 gtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||| ||||||||||||| | | | ||||||||| |||||||||||||||||||    
T  37085564 gtttcaggttcgattctccccaataccaatttaagtgggctaatttaacttctt 37085511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 262
Target Start/End: Complemental strand, 38374644 - 38374563
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttc 262  Q
    ||||||||| |||| ||||||||||| || || | ||||||||||||| |  |||||||||||  ||||||| |||| ||||    
T  38374644 ttgggaccttagagtgtgctcctcctcaaggtcttaggttcgattctccccggtgccaatttaggtgggctagtttagcttc 38374563  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 22760887 - 22760967
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaat 254  Q
    |||||| |||||||||| ||| ||||||||||| || || | ||||||||||||| |   ||||||||| | |||||||||    
T  22760887 tattgacttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctccccgatgccaatttgagtgggctaat 22760967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 174 - 242
Target Start/End: Complemental strand, 25655280 - 25655212
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||||| |||||| ||| ||| ||| ||||||| || |||| |||||||||||||||  ||||||||||    
T  25655280 tattgacttgggatctgtgagtgtgatcctcctcaaggtttcaggttcgattctctctggtgccaattt 25655212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 234
Target Start/End: Original strand, 30442492 - 30442572
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagt 234  Q
    |||||| ||||||| | || |||||  |||||||||| |||  |||||||||| || || |||||||||||||||| ||||    
T  30442492 cacttgggttggcccagtggtattggcttgggacctgggagtttgctcctcctcaaggtctgaggttcgattctctggagt 30442572  T

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Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 242
Target Start/End: Original strand, 39631848 - 39631936
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||||| ||||||||| || |||||  |||||||||| |||   ||||||||| || || | |||||||||||||||  ||||||||||    
T  39631848 cacttgggttggcctagtggtattggcttgggacctgggagtaagctcctcctcaaggtctcaggttcgattctctcttgtgccaattt 39631936  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 12188375 - 12188287
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||||| ||||||||| || |||||  |||||||||| ||| ||||||||||| || |||| | ||||||||||||| |||||||||||    
T  12188375 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtttcaagttcgattctctctagtgccaattt 12188287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 264
Target Start/End: Original strand, 2484769 - 2484834
Alignment:
Q  199 ctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||| |||||||| |||||||||||||||||  ||| |||||| | |||||||||||||||||||    
T  2484769 ctccttcttaaagtctgaggttcgattctctccggtgtcaatttgagtgggctaatttaacttctt 2484834  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 188 - 264
Target Start/End: Original strand, 16535222 - 16535298
Alignment:
Q  188 ctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||| ||||||||||| ||||||| ||||||||||||||  |||||||||||  || || |||||||| |||||    
T  16535222 ctgagagtgtgctcctcctaaaagtttcaggttcgattctctgtagtgccaatttcgattggttaatttaatttctt 16535298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 6385886 - 6385976
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||| |||||||||| ||  |||||||||||||| || | |||||||||||||||  |||| |||||   |||||||||||| ||||||    
T  6385886 tattgacttgggacctgggactgtgctcctccttaaggtctcaggttcgattctctccggtgctaatttgggtgggctaatttagcttctt 6385976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 264
Target Start/End: Complemental strand, 24641242 - 24641152
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||| |||||| ||| ||| |||||||||||  | |||| |||||||||||||   | ||||||||||  |||||||||||||||||||    
T  24641242 tattgacttgggatctgggagtgtgctcctcctcgaggtttaaggttcgattctcctcactgccaatttaggtgggctaatttaacttctt 24641152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 264
Target Start/End: Complemental strand, 11103465 - 11103397
Alignment:
Q  196 gtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||||||| || |  | ||||||||||||  |||||||||||| || ||||||||||||||||    
T  11103465 gtgctcctccttaaggtctccgattcgattctctctggtgccaatttaagtgagctaatttaacttctt 11103397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 12234572 - 12234469
Alignment:
Q  161 gttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaact 260  Q
    ||||||||  || |||||| |||||||||| ||| |||||||  ||  | || | ||||||||||||||| |||| ||||||| ||||| ||||||| ||    
T  12234572 gttggcctggtggtattgacttgggacctgggagtgtgctccctctcgaggtctcaggttcgattctctccagtgtcaatttagatgggataatttagct 12234473  T
Q  261 tctt 264  Q
    ||||    
T  12234472 tctt 12234469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 20213072 - 20213155
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||| ||| ||||||||||| || || | ||||||||||| ||| |||| ||||||   |||||||||||| ||||||    
T  20213072 ttgggacctgggagtgtgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttctt 20213155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 22107095 - 22107178
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||| ||| ||||||||||| || || | ||||||||||| ||| |||| ||||||   |||||||||||| ||||||    
T  22107095 ttgggacctgggagtgtgctcctcctcaatgtctcaggttcgattccctctagtgtcaatttgggtgggctaatttagcttctt 22107178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 33549135 - 33549218
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||| ||| |||||||||||  | || | ||||||||||||||||  ||||||||||  || ||||||||| ||||||    
T  33549135 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgagctaatttagcttctt 33549218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Original strand, 13441139 - 13441171
Alignment:
Q  232 agtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||||| |||||||||||||||||||    
T  13441139 agtgccaatttaagtgggctaatttaacttctt 13441171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 18263906 - 18263954
Alignment:
Q  216 aggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||||| | ||||||||||||  |||||||||||| ||||||    
T  18263906 aggttcgattctccccagtgccaatttaggtgggctaatttagcttctt 18263954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0238 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 5224 - 5307
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||| || ||| ||||||||||||||||||| |||||||||||||||  || | ||||||||| || ||||||| ||||||    
T  5224 ttgggacttgggagtgtgctcctccttaaagttttaggttcgattctctctggtactaatttaaattggttaatttagcttctt 5307  T

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Target: scaffold0006 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 185 - 264
Target Start/End: Complemental strand, 163050 - 162971
Alignment:
Q  185 gacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||| |||||||||| ||| || |||||||||||||||||  ||| ||||||| |||| |||| ||||||||||    
T  163050 gacctgagagtgtgctcctccataaggtctgaggttcgattctctccggtgtcaatttagatggactaacttaacttctt 162971  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 37274504 - 37274421
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||| ||| ||||||||||| || || | |||||||||||||||  |||| ||||||| |||||||||||| ||||||    
T  37274504 ttgggacctgggagtgtgctcctcctcaaggtcttaggttcgattctctctggtgctaatttaagtgggctaatttagcttctt 37274421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 27105055 - 27104990
Alignment:
Q  199 ctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||| |||||||| |||||||||||||||||  ||| |||||| | |||||||||||||||||||    
T  27105055 ctccttcttaaagtctgaggttcgattctctccggtgtcaatttgagtgggctaatttaacttctt 27104990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 7292870 - 7292782
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||||| ||||| ||| || |||||  |||| ||||| ||| ||||||||||| ||||| | ||||||||||||||| |||||||||||    
T  7292870 cacttgggttggtctagtggtattggcttggaacctgggagtgtgctcctcctcaaagtctcaggttcgattctctctagtgccaattt 7292782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 154 - 242
Target Start/End: Complemental strand, 37109423 - 37109335
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaattt 242  Q
    |||||| ||||||||| || |||||  |||||||||| ||| ||||||||||| || || | |||||||||||||||  ||||||||||    
T  37109423 cacttgggttggcctagtggtattggcttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgccaattt 37109335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 264
Target Start/End: Original strand, 23377987 - 23378070
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||| ||| ||||||||||| || || | ||||||||||||||| ||||||||||| |  |||||| |||| ||||||    
T  23377987 ttgggacctgggagtgtgctcctcctcaaggtctcaggttcgattctctctagtgccaatttgagggggctagtttagcttctt 23378070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 19532036 - 19531971
Alignment:
Q  192 gagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaattta 257  Q
    ||||||||||||||||||  ||| |||||||||||||||   ||||||||||  ||||||||||||    
T  19532036 gagcgtgctcctccttaagttttcaggttcgattctctctgatgccaatttaggtgggctaattta 19531971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 264
Target Start/End: Original strand, 41047499 - 41047590
Alignment:
Q  171 tgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||| ||||||| || ||| |||||||| ||| |||| | || |||||||||||| |||  |||||||||||| |||||||||||||||    
T  41047499 tgatattgacttgggacttg-gagtgtgctcctacttgaagtctcag-ttcgattctctcaagtatcaatttaaatggactaatttaacttctt 41047590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 51948546 - 51948594
Alignment:
Q  216 aggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||| |||||||| |||| |||||||||||| |||||||||||||||    
T  51948546 aggttcaattctctccagtgtcaatttaaatggactaatttaacttctt 51948594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 306375 - 306273
Alignment:
Q  161 gttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaact 260  Q
    ||||| ||| || ||||||||||||| ||||||| ||| ||||| ||||||| | || ||||||| |||| | |  ||||||| ||| ||||||||||||    
T  306375 gttggtctagtggtattgatttgggatctgagagtgtgatcctctttaaagtctcagattcgattttctctaat-acaatttagatgagctaatttaact 306277  T
Q  261 tctt 264  Q
    ||||    
T  306276 tctt 306273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 7949499 - 7949416
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||  ||| ||||||||||| || || | |||||||||||||||  ||| |||||||  |||||||||||| ||||||    
T  7949499 ttgggacctcggagtgtgctcctcctcaaggtctcaggttcgattctctctggtgtcaatttaggtgggctaatttagcttctt 7949416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 154 - 257
Target Start/End: Original strand, 41683753 - 41683856
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| |||| |||| || |||||  |||| ||||||||| |||||||| || ||||||| | |||| ||||| || ||||||||||||  |||| |||    
T  41683753 cacttgggttgacctagtggtattggcttggaacctgagagtgtgctccttctcaaagtttcacgttcaattctttctagtgccaatttaggtgggttaa 41683852  T
Q  254 ttta 257  Q
    ||||    
T  41683853 ttta 41683856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 8714703 - 8714793
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||| ||||||| ||||||||||| ||||||| || |||| || || ||||||||  ||||||||||||  ||  ||| |||||||||||    
T  8714703 tattggtttgggatctgagagcgtgttcctcctcaaggtttcagatttgattctcttcagtgccaatttaggtgaactagtttaacttctt 8714793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 52254456 - 52254390
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaat 240  Q
    |||||| ||||||  |||||| |||||||||||| | |||| ||||| ||||||||| |||||||||    
T  52254456 tattgacttgggatatgagagtgtgctcctccttgaggtttcaggttagattctctccagtgccaat 52254390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 264
Target Start/End: Original strand, 53496901 - 53496991
Alignment:
Q  174 tattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||| ||||||||||| ||| ||||||||||| ||||| | || || |||||||||  | ||||||||   ||| |||||||||||||||    
T  53496901 tattggtttgggacctgggagtgtgctcctcctcaaagtctcagatttgattctctctggagccaatttggttggactaatttaacttctt 53496991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 22096618 - 22096577
Alignment:
Q  216 aggttcgattctctcgagtgccaatttaaatgggctaattta 257  Q
    ||||||||||||| | ||||||||||||| ||||||||||||    
T  22096618 aggttcgattctccctagtgccaatttaagtgggctaattta 22096577  T

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Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 181 - 257
Target Start/End: Complemental strand, 49262729 - 49262653
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaattta 257  Q
    ||||||| |||||| ||||||||  || | || | ||||||||||||| | ||||||||||||  ||||||||||||    
T  49262729 ttgggacttgagagtgtgctccttgttgaggtctcaggttcgattctccccagtgccaatttaggtgggctaattta 49262653  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 196 - 264
Target Start/End: Original strand, 51969063 - 51969131
Alignment:
Q  196 gtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    ||||||||||| || |||| ||||||  |||||||  ||||||||||  |||| |||||||||||||||    
T  51969063 gtgctcctcctcaaggtttcaggttcatttctctctggtgccaatttggatggactaatttaacttctt 51969131  T

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Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 264
Target Start/End: Complemental strand, 15368 - 15285
Alignment:
Q  181 ttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||| ||| |||||||||||  | || | ||||||||||||||||  ||||||||||  |||||||||||| ||||||    
T  15368 ttgggacctgggagtgtgctcctcctcgaggtctcaggttcgattctctcggatgccaatttaggtgggctaatttagcttctt 15285  T

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Target: scaffold0211 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 154 - 264
Target Start/End: Original strand, 24057 - 24167
Alignment:
Q  154 cacttgcgttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgagtgccaatttaaatgggctaa 253  Q
    |||||| ||||||||| || |||||| ||||||| |  ||| ||||||||| |  |||| | |||||||||| ||||   ||||||||| | ||||||||    
T  24057 cacttgggttggcctaatggtattgacttgggacttaggagtgtgctcctcttcgaagtgtcaggttcgattatctctgatgccaatttgagtgggctaa 24156  T
Q  254 tttaacttctt 264  Q
    |||||||||||    
T  24157 tttaacttctt 24167  T

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Target: scaffold0187 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 12487 - 12383
Alignment:
Q  161 gttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgag-tgccaatttaaatgggctaatttaac 259  Q
    ||||||||  || |||||| |||  |||||| || ||| ||||||| ||||||| | ||||||||||| |  | |||||||||| |||||||| ||||||    
T  12487 gttggcctggtggtattgacttgaaacctgaaagtgtgatcctcctcaaagtttcaagttcgattctcccttgatgccaatttagatgggctagtttaac 12388  T
Q  260 ttctt 264  Q
    |||||    
T  12387 ttctt 12383  T

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Target: scaffold0187; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 161 - 264
Target Start/End: Complemental strand, 22815 - 22711
Alignment:
Q  161 gttggcctattgatattgatttgggacctgagagcgtgctcctccttaaagtttgaggttcgattctctcgag-tgccaatttaaatgggctaatttaac 259  Q
    ||||||||  || |||||| |||  |||||| || ||| ||||||| ||||||| | ||||||||||| |  | |||||||||| |||||||| ||||||    
T  22815 gttggcctggtggtattgacttgaaacctgaaagtgtgatcctcctcaaagtttcaagttcgattctcccttgatgccaatttagatgggctagtttaac 22716  T
Q  260 ttctt 264  Q
    |||||    
T  22715 ttctt 22711  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 49372 - 49420
Alignment:
Q  216 aggttcgattctctcgagtgccaatttaaatgggctaatttaacttctt 264  Q
    |||||||||||||||  ||| |||||||| |||| ||||||||||||||    
T  49372 aggttcgattctctccggtgtcaatttaagtgggttaatttaacttctt 49420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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