View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3048_low_34 (Length: 279)

Name: NF3048_low_34
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3048_low_34
NF3048_low_34
[»] chr3 (8 HSPs)
chr3 (63-278)||(45699573-45699794)
chr3 (214-270)||(25465937-25465993)
chr3 (210-264)||(38680939-38680993)
chr3 (63-170)||(2832413-2832519)
chr3 (214-270)||(37045445-37045501)
chr3 (126-164)||(4280299-4280337)
chr3 (214-270)||(8557844-8557900)
chr3 (214-270)||(26758360-26758416)
[»] chr7 (10 HSPs)
chr7 (215-272)||(11834357-11834414)
chr7 (215-270)||(6879991-6880046)
chr7 (214-272)||(30079477-30079535)
chr7 (214-270)||(8118176-8118232)
chr7 (214-270)||(41459307-41459363)
chr7 (215-270)||(10338702-10338757)
chr7 (46-158)||(27215222-27215333)
chr7 (210-270)||(22701207-22701267)
chr7 (214-270)||(37375459-37375515)
chr7 (214-270)||(48642919-48642975)
[»] chr4 (7 HSPs)
chr4 (57-192)||(36106416-36106546)
chr4 (216-270)||(6102021-6102075)
chr4 (214-270)||(8312024-8312080)
chr4 (215-270)||(23625794-23625849)
chr4 (63-187)||(48338304-48338421)
chr4 (214-270)||(29232880-29232936)
chr4 (214-270)||(42198919-42198975)
[»] chr5 (10 HSPs)
chr5 (46-160)||(22747602-22747709)
chr5 (214-264)||(26007269-26007319)
chr5 (214-270)||(34969465-34969521)
chr5 (214-270)||(41455005-41455061)
chr5 (141-188)||(563905-563952)
chr5 (214-269)||(11402730-11402785)
chr5 (214-268)||(25495222-25495276)
chr5 (212-270)||(34881216-34881273)
chr5 (214-262)||(38176377-38176425)
chr5 (214-262)||(38203601-38203649)
[»] chr1 (12 HSPs)
chr1 (141-192)||(9962144-9962195)
chr1 (234-270)||(25532869-25532905)
chr1 (214-270)||(32910259-32910315)
chr1 (210-270)||(34914259-34914319)
chr1 (46-104)||(12973505-12973564)
chr1 (126-164)||(35980412-35980450)
chr1 (46-123)||(36203502-36203580)
chr1 (217-270)||(6248215-6248268)
chr1 (214-263)||(8268777-8268826)
chr1 (125-170)||(27507510-27507555)
chr1 (214-270)||(26344943-26344999)
chr1 (214-270)||(40095306-40095362)
[»] chr2 (8 HSPs)
chr2 (63-159)||(12041619-12041709)
chr2 (46-190)||(28790451-28790589)
chr2 (214-270)||(6946441-6946497)
chr2 (141-191)||(30761754-30761804)
chr2 (126-188)||(41461101-41461163)
chr2 (214-270)||(24725691-24725747)
chr2 (214-262)||(28790642-28790690)
chr2 (214-270)||(44085619-44085675)
[»] chr8 (6 HSPs)
chr8 (215-272)||(12193355-12193412)
chr8 (215-272)||(12437783-12437840)
chr8 (46-104)||(24682168-24682227)
chr8 (215-270)||(30254011-30254066)
chr8 (216-270)||(9012730-9012784)
chr8 (140-169)||(38257472-38257501)
[»] chr6 (5 HSPs)
chr6 (214-270)||(24644849-24644905)
chr6 (46-104)||(8135381-8135440)
chr6 (215-270)||(9686183-9686238)
chr6 (214-263)||(14564569-14564618)
chr6 (214-270)||(20500692-20500748)
[»] scaffold0204 (1 HSPs)
scaffold0204 (63-187)||(25826-25943)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 63 - 278
Target Start/End: Original strand, 45699573 - 45699794
Alignment:
Q  63 tttggttcggttttgaagctaaaatcatccgaaccgtaagatcaaacaacatgcagtttgagatttggttttgctcgattgacttttaaaataaaattca 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||      
T  45699573 tttggttcggttttgaagctaaaatcatccgaaccgtaagatcaaacaacatgcagtttgagatttggttttgttcgattgacttttaaaataaaatttg 45699672  T
Q  163 aatcaaacaagaccaatgtggtttgggttg------ctggtgtggannnnnnncaatattaaaatcaagttaagaggctaaaacacaagatatttccaac 256  Q
    ||||||||||||||||||||||||||||||      ||||||||||       ||||||||||||||||||||||| |||||||||||||||||||||||    
T  45699673 aatcaaacaagaccaatgtggtttgggttggatcaactggtgtggatttttttcaatattaaaatcaagttaagagactaaaacacaagatatttccaac 45699772  T
Q  257 aatgttttaaattttagctatt 278  Q
    ||||||||||||||||||||||    
T  45699773 aatgttttaaattttagctatt 45699794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 25465937 - 25465993
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  25465937 attaaaatcaagttaaaaggctaaaacacaacatattttcaacaatgttttaaattt 25465993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 264
Target Start/End: Original strand, 38680939 - 38680993
Alignment:
Q  210 caatattaaaatcaagttaagaggctaaaacacaagatatttccaacaatgtttt 264  Q
    |||||||||||| ||||||| | | |||||||||| |||||||||||||||||||    
T  38680939 caatattaaaattaagttaaaaagttaaaacacaacatatttccaacaatgtttt 38680993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 170
Target Start/End: Complemental strand, 2832519 - 2832413
Alignment:
Q  63 tttggttcggttttgaagctaaaa-tcatccgaaccgtaagatcaaacaacatgcagtttgagatttggttttgctcgattgacttttaaaataaaattc 161  Q
    ||||||| |||||||| ||||||| |||||||||||  ||||| ||| | ||||| |||||   |||||||| | ||| ||||||||||||||||||| |    
T  2832519 tttggtttggttttgaggctaaaagtcatccgaaccacaagataaaaaagcatgcggtttgg--tttggtttggttcggttgacttttaaaataaaatcc 2832422  T
Q  162 aaatcaaac 170  Q
     ||||||||    
T  2832421 gaatcaaac 2832413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 37045445 - 37045501
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||| ||| | ||| |||||||| |||||| ||||||||||||||||||    
T  37045445 attaaaatcaagataaaaagctgaaacacaatatattttcaacaatgttttaaattt 37045501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Original strand, 4280299 - 4280337
Alignment:
Q  126 tttggttttgctcgattgacttttaaaataaaattcaaa 164  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  4280299 tttggtttggctcggttgacttttaaaataaaattcaaa 4280337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 8557900 - 8557844
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||| | ||| |||||||| |||||| |  |||||||||||||||    
T  8557900 attaaaatcaagttaaaaagcttaaacacaacatattttctgcaatgttttaaattt 8557844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 26758360 - 26758416
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||| || |||| | |||||||||||| |||||| || |||||||||||||||    
T  26758360 attaaaattaaattaaaaagctaaaacacaacatattttcagcaatgttttaaattt 26758416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 11834414 - 11834357
Alignment:
Q  215 ttaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaatttta 272  Q
    |||||||||| |||| | |||||||||||| |||||| ||||||||||||||||||||    
T  11834414 ttaaaatcaaattaaaaagctaaaacacaacatattttcaacaatgttttaaatttta 11834357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 6880046 - 6879991
Alignment:
Q  215 ttaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    ||||||||||||||| | | |||||||||| |||||| ||||||||||||||||||    
T  6880046 ttaaaatcaagttaaaaagttaaaacacaacatattttcaacaatgttttaaattt 6879991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 272
Target Start/End: Complemental strand, 30079535 - 30079477
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaatttta 272  Q
    ||||||||||| |||| | |||||||||||| |||||| || |||||||||||||||||    
T  30079535 attaaaatcaacttaaaaagctaaaacacaatatattttcagcaatgttttaaatttta 30079477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 8118232 - 8118176
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||| | ||| |||||||| |||||| || |||||||||||||||    
T  8118232 attaaaatcaagttaaaaagctgaaacacaacatattttcagcaatgttttaaattt 8118176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 41459307 - 41459363
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    ||||||||| |||||| |||||||| ||||| |||||||||||||| |||| |||||    
T  41459307 attaaaatcgagttaaaaggctaaagcacaacatatttccaacaatatttttaattt 41459363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 10338757 - 10338702
Alignment:
Q  215 ttaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||| |||| | |||| ||||||| ||||||||||||||||||| |||||    
T  10338757 ttaaaatcaatttaaaaagctataacacaacatatttccaacaatgttttcaattt 10338702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 158
Target Start/End: Complemental strand, 27215333 - 27215222
Alignment:
Q  46 gggtgttcgtcgtgcgatttggttcggttttgaagctaaaa-tcatccgaaccgtaagatcaaacaacatgcagtttgagatttggttttgctcgattga 144  Q
    |||||||||| ||||  |||||||| |||||||| |||||  ||| |||||||| ||||| ||| ||||| | ||||||  ||| |||| | ||| ||||    
T  27215333 gggtgttcgtggtgcagtttggttcagttttgaaactaaatgtcacccgaaccgcaagataaaaaaacatacggtttga--ttttgtttggttcggttga 27215236  T
Q  145 cttttaaaataaaa 158  Q
    ||||||||||||||    
T  27215235 cttttaaaataaaa 27215222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 210 - 270
Target Start/End: Complemental strand, 22701267 - 22701207
Alignment:
Q  210 caatattaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    ||||||||||||| |||||| | | ||||||| || |||||| |||||||||||| |||||    
T  22701267 caatattaaaatctagttaaaaagataaaacataacatattttcaacaatgttttcaattt 22701207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 37375459 - 37375515
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||| |   | |||||||| |||||| ||||||||||||||||||    
T  37375459 attaaaatcaagttaaaaattttaaacacaacatattttcaacaatgttttaaattt 37375515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 48642919 - 48642975
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||| | ||| |||||||  |||||| || |||||||||||||||    
T  48642919 attaaaatcaagttaaaaagcttaaacacaccatatttacagcaatgttttaaattt 48642975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 57 - 192
Target Start/End: Complemental strand, 36106546 - 36106416
Alignment:
Q  57 gtgcgatttggttcggttttgaagctaaaa-tcatccgaaccgtaagatcaaacaacatgcagtttgagatttggttttgctcgattgacttttaaaata 155  Q
    ||||| |||||||||||||||| | ||||| |||||||||||| ||||| ||| ||||||| ||      |||||||| | ||| |||||||||||||||    
T  36106546 gtgcggtttggttcggttttgaggttaaaagtcatccgaaccgcaagataaaaaaacatgcggt------tttggtttggttcggttgacttttaaaata 36106453  T
Q  156 aaattcaaatcaaacaagaccaatgtggtttgggttg 192  Q
    |||| | || ||||| | ||||||| |||||| ||||    
T  36106452 aaatccgaaccaaaccaaaccaatgcggtttgagttg 36106416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Original strand, 6102021 - 6102075
Alignment:
Q  216 taaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||| ||| |||||||||| |||||| |||| |||||||||||||    
T  6102021 taaaatcaagttaaaaggataaaacacaacatattttcaacgatgttttaaattt 6102075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 8312024 - 8312080
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||| | |||||||||||| | |||| || |||||||||||||||    
T  8312024 attaaaatcaagttaaaaagctaaaacacaacaaattttcagcaatgttttaaattt 8312080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 23625849 - 23625794
Alignment:
Q  215 ttaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||| |||| | | |||||||||| |||||| ||||||||||||||||||    
T  23625849 ttaaaatcaaattaaaaagttaaaacacaacatattttcaacaatgttttaaattt 23625794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 48338304 - 48338421
Alignment:
Q  63 tttggttcggttttgaagctaaaa-tcatccgaaccgtaagatcaaacaacatgcagtttgagatttggttttgctcgattgacttttaaaataaaattc 161  Q
    |||||||||||||| | | ||||| |||||||||||||||||| ||| |||||||||       |||||||| | ||| ||||||||||||||||||| |    
T  48338304 tttggttcggttttaaggttaaaagtcatccgaaccgtaagat-aaaaaacatgcag-------tttggtttggttcggttgacttttaaaataaaatcc 48338395  T
Q  162 aaatcaaacaagaccaatgtggtttg 187  Q
    ||| ||||| | | ||||| ||||||    
T  48338396 aaaccaaaccaaatcaatgcggtttg 48338421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 29232880 - 29232936
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    ||||||||||| ||||   ||||||| |||| |||||| ||||||||||||||||||    
T  29232880 attaaaatcaaattaaacagctaaaaaacaacatattttcaacaatgttttaaattt 29232936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 42198919 - 42198975
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||| ||||| | | |||||||||| |||||| | ||||||||||||||||    
T  42198919 attaaaatcatgttaaaaagttaaaacacaacatattttcgacaatgttttaaattt 42198975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 46 - 160
Target Start/End: Complemental strand, 22747709 - 22747602
Alignment:
Q  46 gggtgttcgtcgtgcgatttggttcggttttgaagctaaaatcatccgaaccgtaagatcaaacaacatgcagtttgagatttggttttgctcgattgac 145  Q
    |||||||||  || || ||| |||||||||||| |||||| |||||||||||| ||||| |||  |||||| ||||  ||||||||     |||||||||    
T  22747709 gggtgttcgcggtacggtttagttcggttttgaggctaaagtcatccgaaccgcaagataaaagtacatgcggttt--gatttggt-----tcgattgac 22747617  T
Q  146 ttttaaaataaaatt 160  Q
    |||||||||||||||    
T  22747616 ttttaaaataaaatt 22747602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 264
Target Start/End: Complemental strand, 26007319 - 26007269
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgtttt 264  Q
    |||||||||||||||| | |||| ||||||| |||||||||||||||||||    
T  26007319 attaaaatcaagttaaaaagctataacacaacatatttccaacaatgtttt 26007269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 34969465 - 34969521
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||| |  ||||||||||| ||| |||||||||| ||||||||||    
T  34969465 attaaaatcaagttaaaaaactaaaacacaacatacttccaacaatcttttaaattt 34969521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 41455005 - 41455061
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    ||||||||||| |||| | |||||||||||| |||||| || |||||||||||||||    
T  41455005 attaaaatcaaattaaaaagctaaaacacaacatattttcatcaatgttttaaattt 41455061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 141 - 188
Target Start/End: Complemental strand, 563952 - 563905
Alignment:
Q  141 ttgacttttaaaataaaattcaaatcaaacaagaccaatgtggtttgg 188  Q
    ||||||||||||||||||||| |||||||||| | |||| ||||||||    
T  563952 ttgacttttaaaataaaattcgaatcaaacaaaatcaatttggtttgg 563905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 214 - 269
Target Start/End: Original strand, 11402730 - 11402785
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaatt 269  Q
    |||||||||||||||| | ||| |||||||| |||||| || ||||||||||||||    
T  11402730 attaaaatcaagttaaaaagctgaaacacaacatattttcagcaatgttttaaatt 11402785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 214 - 268
Target Start/End: Original strand, 25495222 - 25495276
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaat 268  Q
    ||||||||||| |||| | | |||||||||| |||||| ||||||||||||||||    
T  25495222 attaaaatcaaattaaaaaggtaaaacacaacatattttcaacaatgttttaaat 25495276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 270
Target Start/End: Complemental strand, 34881273 - 34881216
Alignment:
Q  212 atattaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||||| |  |||||||||||  ||||| ||||||||||||||||||    
T  34881273 atattaaaatcaagttaaaaatctaaaacacaacgtattt-caacaatgttttaaattt 34881216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 38176425 - 38176377
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgtt 262  Q
    ||||||||| |||||| | |||| ||||||| |||||||||||||||||    
T  38176425 attaaaatcgagttaaaaagctataacacaatatatttccaacaatgtt 38176377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Complemental strand, 38203649 - 38203601
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgtt 262  Q
    ||||||||| |||||| | |||| ||||||| |||||||||||||||||    
T  38203649 attaaaatcgagttaaaaagctataacacaatatatttccaacaatgtt 38203601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 141 - 192
Target Start/End: Complemental strand, 9962195 - 9962144
Alignment:
Q  141 ttgacttttaaaataaaattcaaatcaaacaagaccaatgtggtttgggttg 192  Q
    ||||||||| |||||||||||||| ||||| | |||||||||||||||||||    
T  9962195 ttgacttttcaaataaaattcaaaccaaaccaaaccaatgtggtttgggttg 9962144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 270
Target Start/End: Original strand, 25532869 - 25532905
Alignment:
Q  234 ctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    ||||||||||| |||||||||||||||||||||||||    
T  25532869 ctaaaacacaacatatttccaacaatgttttaaattt 25532905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 32910315 - 32910259
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||| | | | |||||||| |||||| ||||||||||||||||||    
T  32910315 attaaaatcaagttaaaaagtttaaacacaacatattttcaacaatgttttaaattt 32910259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 210 - 270
Target Start/End: Original strand, 34914259 - 34914319
Alignment:
Q  210 caatattaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    ||||||||||||||| |||| |  ||||||||||| |||||| || |||||||||||||||    
T  34914259 caatattaaaatcaaattaaaaacctaaaacacaacatattttcagcaatgttttaaattt 34914319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 12973505 - 12973564
Alignment:
Q  46 gggtgttcgtcgtgcgatttggttcggttttgaagct-aaaatcatccgaaccgtaagat 104  Q
    |||||||||  ||||| |||||||||||||||||||| ||| |||||||||||| |||||    
T  12973505 gggtgttcgcggtgcggtttggttcggttttgaagctgaaagtcatccgaaccgcaagat 12973564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 35980450 - 35980412
Alignment:
Q  126 tttggttttgctcgattgacttttaaaataaaattcaaa 164  Q
    |||||||||| ||||||||||||||||||||||| ||||    
T  35980450 tttggttttgttcgattgacttttaaaataaaatccaaa 35980412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 123
Target Start/End: Complemental strand, 36203580 - 36203502
Alignment:
Q  46 gggtgttcgtcgtgcgatttggttcggttttgaagctaaaa-tcatccgaaccgtaagatcaaacaacatgcagtttga 123  Q
    |||||||||  |||||||||||||||||||||| | ||||| |||||| ||||| ||||| ||| | ||||| ||||||    
T  36203580 gggtgttcgcggtgcgatttggttcggttttgaggttaaaagtcatccaaaccgcaagataaaaaagcatgcggtttga 36203502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 270
Target Start/End: Original strand, 6248215 - 6248268
Alignment:
Q  217 aaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||| |||| | |||||||||||| |||||| || |||||||||||||||    
T  6248215 aaaatcaaattaaaaagctaaaacacaatatattttcagcaatgttttaaattt 6248268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 8268777 - 8268826
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttt 263  Q
    |||||||||||||||| | |||||||||||| |||||||||  |||||||    
T  8268777 attaaaatcaagttaaaaagctaaaacacaacatatttccagtaatgttt 8268826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 170
Target Start/End: Complemental strand, 27507555 - 27507510
Alignment:
Q  125 atttggttttgctcgattgacttttaaaataaaattcaaatcaaac 170  Q
    ||||||||| | ||| ||||||||||||||||||| ||||||||||    
T  27507555 atttggtttagttcggttgacttttaaaataaaatccaaatcaaac 27507510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 26344999 - 26344943
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    ||||||||||| |||| | | |||||||||| |||||| || |||||||||||||||    
T  26344999 attaaaatcaaattaaaaagttaaaacacaacatattttcagcaatgttttaaattt 26344943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 40095362 - 40095306
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||| || |||| | |||||||| ||| |||||| ||||||||||||||||||    
T  40095362 attaaaattaaattaaaaagctaaaacgcaacatattttcaacaatgttttaaattt 40095306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 159
Target Start/End: Complemental strand, 12041709 - 12041619
Alignment:
Q  63 tttggttcggttttgaagctaaaa-tcatccgaaccgtaagatcaaacaacatgcagtttgagatttggttttgctcgattgacttttaaaataaaat 159  Q
    |||||||||||||||| ||||||| ||||| |||||||||||| ||| ||||||| ||||  ||||||||     ||| |||||||||||||||||||    
T  12041709 tttggttcggttttgaggctaaaagtcatctgaaccgtaagataaaaaaacatgcggttt--gatttggt-----tcggttgacttttaaaataaaat 12041619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 190
Target Start/End: Original strand, 28790451 - 28790589
Alignment:
Q  46 gggtgttcgtcgtgcgatttggttcggttttgaagctaaaa-tcatccgaaccgtaagatcaaacaacatgcagtttgagatttggttttgctcgattga 144  Q
    |||||||||| ||||| |||||||| ||||||| | ||||| ||||| |||||| ||||| ||| | ||||| ||||||   || | ||    || ||||    
T  28790451 gggtgttcgtggtgcggtttggttcagttttgatgttaaaagtcatctgaaccgcaagataaaaaagcatgcggtttga---ttagatt----cggttga 28790543  T
Q  145 cttttaaaataaaattcaaatcaaacaagaccaatgtggtttgggt 190  Q
    ||||||||||||||| |||| ||||| | |||||||||||||||||    
T  28790544 cttttaaaataaaatccaaaccaaaccaaaccaatgtggtttgggt 28790589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 6946497 - 6946441
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||| | | ||||||||||  ||||||||||||||||||| ||||    
T  6946497 attaaaatcaagttaaaaaggtaaaacacaacttatttccaacaatgttttatattt 6946441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 30761804 - 30761754
Alignment:
Q  141 ttgacttttaaaataaaattcaaatcaaacaagaccaatgtggtttgggtt 191  Q
    |||||||||||||||||||||||| ||||| | ||||||| | ||||||||    
T  30761804 ttgacttttaaaataaaattcaaaccaaaccaaaccaatgcgatttgggtt 30761754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 41461101 - 41461163
Alignment:
Q  126 tttggttttgctcgattgacttttaaaataaaattcaaatcaaacaagaccaatgtggtttgg 188  Q
    |||||||| | ||| ||||||||||||||||||||| || ||||| | ||||||| |||||||    
T  41461101 tttggtttggttcggttgacttttaaaataaaattcgaaccaaaccaaaccaatgcggtttgg 41461163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 24725747 - 24725691
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||| | | ||||| |||| ||||||||| |||||||||| ||||    
T  24725747 attaaaatcaagttaaaaagttaaaagacaacatatttccagcaatgttttatattt 24725691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 28790642 - 28790690
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgtt 262  Q
    ||||||||| |||||| | |||| ||||||| |||||||||||||||||    
T  28790642 attaaaatcgagttaaaaagctataacacaacatatttccaacaatgtt 28790690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 44085619 - 44085675
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||| | ||  |||||||| |||||| || |||||||||||||||    
T  44085619 attaaaatcaagttaaaaagccgaaacacaacatattttcagcaatgttttaaattt 44085675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 12193412 - 12193355
Alignment:
Q  215 ttaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaatttta 272  Q
    |||||||||| |||| | |||||||||||| |||||| || |||||||||||||||||    
T  12193412 ttaaaatcaaattaaaaagctaaaacacaacatattttcagcaatgttttaaatttta 12193355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 215 - 272
Target Start/End: Complemental strand, 12437840 - 12437783
Alignment:
Q  215 ttaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaatttta 272  Q
    |||||||||| |||| | |||||||||||| |||||| || |||||||||||||||||    
T  12437840 ttaaaatcaaattaaaaagctaaaacacaacatattttcagcaatgttttaaatttta 12437783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 24682227 - 24682168
Alignment:
Q  46 gggtgttcgtcgtgcgatttggttcggttttgaagctaaaa-tcatccgaaccgtaagat 104  Q
    |||||||||| |||||  ||||||||||||||| ||||||| |||||||||||| |||||    
T  24682227 gggtgttcgtggtgcggcttggttcggttttgaggctaaaattcatccgaaccgcaagat 24682168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 270
Target Start/End: Complemental strand, 30254066 - 30254011
Alignment:
Q  215 ttaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||| |||| ||| ||||||||||  ||||| ||||||||||||||||||    
T  30254066 ttaaaatcaaattaaaaggttaaaacacaacctattttcaacaatgttttaaattt 30254011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 9012784 - 9012730
Alignment:
Q  216 taaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||| |  ||||||||||| |||||| ||| ||||||||||||||    
T  9012784 taaaatcaagttaaaaaactaaaacacaaaatattttcaataatgttttaaattt 9012730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 169
Target Start/End: Complemental strand, 38257501 - 38257472
Alignment:
Q  140 attgacttttaaaataaaattcaaatcaaa 169  Q
    ||||||||||||||||||||||||||||||    
T  38257501 attgacttttaaaataaaattcaaatcaaa 38257472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 24644905 - 24644849
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    ||||||||||| |||| |  ||||||||||| |||||| ||||||||||||||||||    
T  24644905 attaaaatcaaattaaaaaactaaaacacaacatattttcaacaatgttttaaattt 24644849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 8135381 - 8135440
Alignment:
Q  46 gggtgttcgtcgtgcgatttggttcggttttgaagctaaaa-tcatccgaaccgtaagat 104  Q
    |||||||||  ||||| |||||||||||||||| ||||||| |||||||||||| |||||    
T  8135381 gggtgttcgcggtgcgttttggttcggttttgaggctaaaagtcatccgaaccgcaagat 8135440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 270
Target Start/End: Original strand, 9686183 - 9686238
Alignment:
Q  215 ttaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||| |||| | ||||||||||||  ||||| ||||||||||||||||||    
T  9686183 ttaaaatcaaattaaaaagctaaaacacaacttattttcaacaatgttttaaattt 9686238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 14564569 - 14564618
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttt 263  Q
    |||||||||||||||| |  ||||||||||| ||||||| ||||||||||    
T  14564569 attaaaatcaagttaaaaaactaaaacacaacatatttctaacaatgttt 14564618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 214 - 270
Target Start/End: Original strand, 20500692 - 20500748
Alignment:
Q  214 attaaaatcaagttaagaggctaaaacacaagatatttccaacaatgttttaaattt 270  Q
    |||||||||||||||| |  ||||||||||| |||||| || |||||||| ||||||    
T  20500692 attaaaatcaagttaaaaatctaaaacacaacatattttcagcaatgtttcaaattt 20500748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 25826 - 25943
Alignment:
Q  63 tttggttcggttttgaagctaaaa-tcatccgaaccgtaagatcaaacaacatgcagtttgagatttggttttgctcgattgacttttaaaataaaattc 161  Q
    |||||||||||||| | | ||||| |||||||||||||||||| ||| |||||||||       |||||||| | ||| ||||||||||||||||||| |    
T  25826 tttggttcggttttaaggttaaaagtcatccgaaccgtaagat-aaaaaacatgcag-------tttggtttggttcggttgacttttaaaataaaatcc 25917  T
Q  162 aaatcaaacaagaccaatgtggtttg 187  Q
    ||| ||||| | | ||||| ||||||    
T  25918 aaaccaaaccaaatcaatgcggtttg 25943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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