View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_35 (Length: 277)
Name: NF3048_low_35
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 17 - 275
Target Start/End: Complemental strand, 45623645 - 45623390
Alignment:
| Q |
17 |
aataatgtctgtttggcaagttttataatgaaatagggattttgcaatattcagtttaagttgaattgcagctttaacagtggcagtctactagctttgg |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| |
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| T |
45623645 |
aataatgtctgtttggcaagttttataatgaaatagggattta-caatattcagtttaagttgaattgcatctttaacagtggtagtctactagctttgg |
45623547 |
T |
|
| Q |
117 |
tggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgaggtctgcattattaaagagtaggcggataaaactgaaactcagaagnnn |
216 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45623546 |
tggtgtatgctatgatacaatttaaactcaaaggatcacaagttttgatgagggctgcattattaaagagtaggcggataaaactgaaactcagaa--aa |
45623449 |
T |
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| Q |
217 |
nnnnnntgtgattgcttgttttacaaactcaaagtgagatttattataggacaaactca |
275 |
Q |
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|||| ||||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
45623448 |
aaaaaatgtggttgcttgttttacaaactcaaagtgagatattttataggacaaactca |
45623390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 154; Significance: 1e-81; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 55 - 275
Target Start/End: Original strand, 7934719 - 7934935
Alignment:
| Q |
55 |
attttgcaatattcagtttaagttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatca |
154 |
Q |
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| T |
7934719 |
attttgcaatattcagtttcagttgaattgcagctttaacagtggtagtctactggctttggtggtgtatgctaagatacaatttaaactcaaaggatca |
7934818 |
T |
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| Q |
155 |
caagttttgatgaggtctgcattattaaagagtaggcggataaaactgaaactcagaagnnnnnnnnntgtgattgcttgttttacaaactcaaagtgag |
254 |
Q |
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| T |
7934819 |
caagttctgatgagggctgcattattaaagagtaggcggataaaactgaaactcaaaa----aaaaaatgtgattgcttgttttacaaactcaaagtgag |
7934914 |
T |
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| Q |
255 |
atttattataggacaaactca |
275 |
Q |
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|| | |||||||||||||||| |
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| T |
7934915 |
atattttataggacaaactca |
7934935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 146; E-Value: 6e-77
Query Start/End: Original strand, 55 - 275
Target Start/End: Complemental strand, 34578965 - 34578748
Alignment:
| Q |
55 |
attttgcaatattcagtttaagttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatca |
154 |
Q |
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||||||||||||||| ||| | ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
34578965 |
attttgcaatattcaatttcatttgaattgcagctttaacagtggtaatctactagctttggtggtgtattctaagatacaatttaaactcaaaggatca |
34578866 |
T |
|
| Q |
155 |
caagttttgatgaggtctgcattattaaagagtaggcggataaaactgaaactcagaagnnnnnnnnntgtgattgcttgttttacaaactcaaagtgag |
254 |
Q |
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| T |
34578865 |
caagttttgatgagggctgcattattaaagagtaggcggataaaactgaaactcagaa---aaaaaaatgtgattgcttgttttacaaactcaaagtgag |
34578769 |
T |
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| Q |
255 |
atttattataggacaaactca |
275 |
Q |
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|| | ||||| |||||||||| |
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| T |
34578768 |
atattttatacgacaaactca |
34578748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 7934620 - 7934658
Alignment:
| Q |
17 |
aataatgtctgtttggcaagttttataatgaaataggga |
55 |
Q |
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| T |
7934620 |
aataatgtctgtttggcaagttttataatgaaataggga |
7934658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 34579064 - 34579026
Alignment:
| Q |
17 |
aataatgtctgtttggcaagttttataatgaaataggga |
55 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
34579064 |
aataatgtctgtttggcaagttttataatgaaataggga |
34579026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 77 - 255
Target Start/End: Original strand, 29846966 - 29847143
Alignment:
| Q |
77 |
ttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgaggtctgcat |
176 |
Q |
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|||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
29846966 |
ttgaattgtagctttaacagtggtaatctactagctt-ggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgagggctgcat |
29847064 |
T |
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| Q |
177 |
tattaaagagtaggcggataaaactgaaactcagaagnnnnnnnnntgtgattgcttgttttacaaactcaaagtgaga |
255 |
Q |
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|||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29847065 |
tattaaagagtaaggggataaaactgaaactcagaaggaaaaaaattgtgattgcttgttttacaaactcaaagtgaga |
29847143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 77 - 255
Target Start/End: Original strand, 29867160 - 29867337
Alignment:
| Q |
77 |
ttgaattgcagctttaacagtggcagtctactagctttggtggtgtatgctaagatacaatttaaactcaaaggatcacaagttttgatgaggtctgcat |
176 |
Q |
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|||||||| |||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |
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| T |
29867160 |
ttgaattgtagctttaacagtggtaatctactagctt-ggtggtgtatgctaagatacaatttaaactcaaaggatcgcaagttttgatgagggctgcat |
29867258 |
T |
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| Q |
177 |
tattaaagagtaggcggataaaactgaaactcagaagnnnnnnnnntgtgattgcttgttttacaaactcaaagtgaga |
255 |
Q |
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|||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29867259 |
tattaaagagtaaggggataaaactgaaactcagaaggaaaaaaattgtgattgcttgttttacaaactcaaagtgaga |
29867337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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