View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_38 (Length: 262)
Name: NF3048_low_38
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_38 |
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Alignment Details
Target: chr2 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 261
Target Start/End: Complemental strand, 44489698 - 44489456
Alignment:
| Q |
18 |
attatagtcatatacaacgacagtctctggtttccaaccatctcttcctttcctaaataagtacagttcacatatctggctggtacattctcccattaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489698 |
attatagtcatatacaacgacagtctctggtttccaaccatctcttcctttcctaaataagtacagttcacatatctggctggtacattctcccattaca |
44489599 |
T |
|
| Q |
118 |
tcaaatgaaactgtggtgcacttcttgaatgcaccagggtcatccaatcttttaacataaagctgcaattatacatcaaaccagtacattacataatttc |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44489598 |
tcaaatgaaactgtggtgcacctcttgaatgcaccagggtcatccaatcttttaacataaagctgcaattatacatcaaaccagtacattacataatttc |
44489499 |
T |
|
| Q |
218 |
attnnnnnnnnntataattcatataaactattaattgttcatat |
261 |
Q |
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||| ||||||||||||||||||||||||||||||| |
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| T |
44489498 |
attaaaaaaaaa-ataattcatataaactattaattgttcatat |
44489456 |
T |
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