View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_44 (Length: 241)
Name: NF3048_low_44
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_44 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 15190528 - 15190291
Alignment:
| Q |
1 |
ttataactccgttaagtggaaagaaggagtggaaaacggaaggaaggtaggtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaac |
100 |
Q |
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| T |
15190528 |
ttataactccgttaagtggaaagaaggagtggaaaaaggaaggaaggtaggtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaac |
15190429 |
T |
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| Q |
101 |
aaagagtgcaccagcattgttgcatgcaagggaacacgagatagtgttatcttcgtgttctgtaatttcgagacgaccagcaaagggtggaaagaatgca |
200 |
Q |
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| T |
15190428 |
aaagagtgcaccagcatttttgcatgcaagggaacacgaaatagtgttatcttcgtgttctgtaatttcgagacgaccagtaaagggtggaaagaatgca |
15190329 |
T |
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| Q |
201 |
agggcacggtaaagagaccgtttaaagtgttgaatttt |
238 |
Q |
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| T |
15190328 |
agggcacaggaaagagactgtttaaagtgttgaatttt |
15190291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 93 - 204
Target Start/End: Complemental strand, 15744223 - 15744112
Alignment:
| Q |
93 |
gcatgaacaaagagtgcaccagcattgttgcatgcaagggaacacgagatagtgttatcttcgtgttctgtaatttcgagacgaccagcaaagggtggaa |
192 |
Q |
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| T |
15744223 |
gcatgaacaaatagtgcaccaacattgttgcacgtgatggaacacgagatagtgttatcttcgtgttccttgattttgagacgaccagtaaagggtggaa |
15744124 |
T |
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| Q |
193 |
agaatgcaaggg |
204 |
Q |
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| T |
15744123 |
aaaattcaaggg |
15744112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 175
Target Start/End: Complemental strand, 8935396 - 8935268
Alignment:
| Q |
47 |
gtaggtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcattgttgcatgcaagggaacacgagatagtg |
146 |
Q |
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| T |
8935396 |
gtaggtgggttctagaatgtcagcaacacaagtattctctgatctggcatggacaaagagtacacctgcattgttgcatataacggagcacgagacagtt |
8935297 |
T |
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| Q |
147 |
ttatcttcgtgttctgtaatttcgagacg |
175 |
Q |
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| T |
8935296 |
ttgtcttggtattccgttattttgagacg |
8935268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 178
Target Start/End: Complemental strand, 8934455 - 8934324
Alignment:
| Q |
47 |
gtaggtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcattgttgcatgcaagggaacacgagatagtg |
146 |
Q |
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| T |
8934455 |
gtaggtgggttctagaatgtcagcaacacaagtattctctgatctggcatggacaaagagtacatctgcattgttgcatataacggagcacgagacagtt |
8934356 |
T |
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| Q |
147 |
ttatcttcgtgttctgtaatttcgagacgacc |
178 |
Q |
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| T |
8934355 |
ttgtcttggtattccgttattttgagacgacc |
8934324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 125
Target Start/End: Complemental strand, 8930000 - 8929922
Alignment:
| Q |
47 |
gtaggtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcattgttgcat |
125 |
Q |
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|||||||| | |||||||||| |||||||| || ||||||| | | ||||||||||||||| || | |||||||||||| |
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| T |
8930000 |
gtaggtgggttctagaatgtcagcaacacaagtattctctgatctggcatgaacaaagagtacaactgcattgttgcat |
8929922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 47 - 175
Target Start/End: Original strand, 7637891 - 7638019
Alignment:
| Q |
47 |
gtaggtggatcctagaatgtcggcaacacatgtgttctctgcttttgcatgaacaaagagtgcaccagcattgttgcatgcaagggaacacgagatagtg |
146 |
Q |
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|||||||| | |||| ||||| |||||||| || ||||||||| ||||| ||||||||| |||| |||||||||||| || ||||||||| | |||| |
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| T |
7637891 |
gtaggtgggttctaggatgtctgcaacacaagtattctctgctgcggcatggacaaagagtacacctgcattgttgcatataacggaacacgaaacagtg |
7637990 |
T |
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| Q |
147 |
ttatcttcgtgttctgtaatttcgagacg |
175 |
Q |
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|| ||| |||||| || |||| |||||| |
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| T |
7637991 |
ttgtctctgtgttccgttattttgagacg |
7638019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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