View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_45 (Length: 239)
Name: NF3048_low_45
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_45 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 216
Target Start/End: Complemental strand, 34216976 - 34216776
Alignment:
| Q |
16 |
cacagatagcataattatcacaactgtctgcaggtccgacaaagaaaagttgccaactatttgtctgattcgacaacatgtatcgcgctatttgaccagt |
115 |
Q |
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| T |
34216976 |
cacagatagcataattatcacaactgtctgcaggtccgacaaagaaaagttgccaactatttgtctgatccgacaacatgtatcgcgctatttgaccagt |
34216877 |
T |
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| Q |
116 |
tgaagataccaagtatcttgaaacaacagacttgttcaaaagttcatatccataagaaatttccttctcagtaatcacaaatgaaaagttataggctttg |
215 |
Q |
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| T |
34216876 |
tgaagataccaagtatcttgaaacaacagacttgttcaaaagttcatatccataagaaatttccttctcagtaatcacaaatgaaaagttataggctttg |
34216777 |
T |
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| Q |
216 |
t |
216 |
Q |
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| |
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| T |
34216776 |
t |
34216776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 54 - 201
Target Start/End: Original strand, 34194638 - 34194785
Alignment:
| Q |
54 |
acaaagaaaagttgccaactatttgtctgattcgacaacatgtatcgcgctatttgaccagttgaagataccaagtatcttgaaacaacagacttgttca |
153 |
Q |
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| T |
34194638 |
acaaagacaagttgccaactctttgtctgatcggacaacatgtaacgcgatacttgaccgattggagttagcatgtaccttgaaacaatggacttgtcca |
34194737 |
T |
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| Q |
154 |
aaagttcatatccataagaaatttccttctcagtaatcacaaatgaaa |
201 |
Q |
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| T |
34194738 |
aaagttcatatccataagaaacttccttttcagtaatcacaaatgaaa |
34194785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 189
Target Start/End: Complemental strand, 34205415 - 34205378
Alignment:
| Q |
152 |
caaaagttcatatccataagaaatttccttctcagtaa |
189 |
Q |
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| T |
34205415 |
caaaagttcatatccataagaaacttccgtctcagtaa |
34205378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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