View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_48 (Length: 237)
Name: NF3048_low_48
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 4e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 13 - 221
Target Start/End: Original strand, 21096857 - 21097065
Alignment:
| Q |
13 |
aatatggatttctcattcacactatttcttctagtattggccttttcattccaatcttcatcttcttttttatcatcattgacaaagggttcatccatct |
112 |
Q |
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| T |
21096857 |
aatatggatttctcattcacactctttcttctagtattggccttttcattcaaatcttcatcttcttttttatcatcattgagaaagggttcatccatct |
21096956 |
T |
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| Q |
113 |
cagtagaaaacccagaagacaaaattatctcacaaaatggcatgttctctgctgggtttacttccattggtgaaaactcatattcctttgccatatggtt |
212 |
Q |
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| T |
21096957 |
cagtagaaaatccacaagaccaaatcatctcacaaaatggcatgttctctgctggttttacttccattggtgaaaattcatattcctttgccatatggtt |
21097056 |
T |
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| Q |
213 |
cacagaacc |
221 |
Q |
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||||||||| |
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| T |
21097057 |
cacagaacc |
21097065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 13 - 167
Target Start/End: Original strand, 21095165 - 21095319
Alignment:
| Q |
13 |
aatatggatttctcattcacactatttcttctagtattggccttttcattccaatcttcatcttcttttttatcatcattgacaaagggttcatccatct |
112 |
Q |
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|||||||||||||| || ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
21095165 |
aatatggatttctcgtttacactatttcttctaatattaatcttttcattcaaatcttcatcttcttttttatcatcattgagaaagggttcatccatct |
21095264 |
T |
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| Q |
113 |
cagtagaaaacccagaagacaaaattatctcacaaaatggcatgttctctgctgg |
167 |
Q |
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| T |
21095265 |
cagtagaaaatccacaagacaaaatcatctcacaaaatggcagattctctactgg |
21095319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 21106507 - 21106684
Alignment:
| Q |
41 |
ttctagtattggccttttcattccaatcttcatcttcttttttatcatcattgacaaagggttcatccatctcagtagaaaacccagaagacaaaattat |
140 |
Q |
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| T |
21106507 |
ttctagtattggcctttttatttcaatgttcatcttcttctt---catcattgagaaagggttcctccctcttagtggaaaatccagaagataacatcat |
21106603 |
T |
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| Q |
141 |
ctcacaaaatggcatgttctctgctgggtttacttccattggtgaaaactcatattcctttgccatatggttcacagaacc |
221 |
Q |
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| T |
21106604 |
gtcacaaaatggcatgttctctgctggctttactgctattggtgagaatgcatattcctttgccatatggttcacagaacc |
21106684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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