View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_5 (Length: 491)
Name: NF3048_low_5
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 8 - 277
Target Start/End: Original strand, 52441955 - 52442223
Alignment:
| Q |
8 |
aatgagatgaatgtagttagctctttttagagtgagattgtgaattattatttttactaaagagagattatgaatgttgttagttttgtannnnnnnnnn |
107 |
Q |
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| T |
52441955 |
aatgatatgaatgtagttagctctttttagagtgagattatgaattattatttttactaaagagagattatgaatgttgttagttttgtatttttttttt |
52442054 |
T |
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| Q |
108 |
nagggaatgaatgttgttagttgattagttcatccatgtaagtaaataaacatggtatgattgtattgctgacttattttttatggtttgattaatggtt |
207 |
Q |
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| T |
52442055 |
-agggaatgaatgttgttagttgattagttcatccatgtaagtaaataaacatggtatgattgtattgttgacttattttttatggtttgattaatggtt |
52442153 |
T |
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| Q |
208 |
tggctgcggagcacagtgctctcattattctttcatttacatatgttttattgtgctagtaaatagtatg |
277 |
Q |
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| T |
52442154 |
tggctgcggagcacagtgctcttattattctttcatttacatatgttttattgtgctagtaaatagtatg |
52442223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 331 - 470
Target Start/End: Original strand, 52442277 - 52442416
Alignment:
| Q |
331 |
aggcgtataaagtaataaaatatttctgtaccacttgtaagtggacacaacatttagaaagaacaatagtaatttgtacnnnnnnnnnncacaatagtta |
430 |
Q |
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| T |
52442277 |
aggcgtataaagtaataaaatatttttgtaccacttgtaagtggacacaacatttagaaagaacaatagtaatttgtacaaaaaaaaaacacaatagtta |
52442376 |
T |
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| Q |
431 |
tggtgatgttaatgtgtaagttctataaaaagtaataata |
470 |
Q |
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| T |
52442377 |
tggtgatgttaatgtgtaagttctataaaaagtaataata |
52442416 |
T |
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