View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_51 (Length: 237)
Name: NF3048_low_51
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_51 |
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Alignment Details
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 36612449 - 36612236
Alignment:
| Q |
4 |
ggagaaggagagagcgatggaaaacagatgatccgttttgtaatttttcaaggtgtcaatgataattgttaaagatttgtctcatcaatgtttttgttgg |
103 |
Q |
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| T |
36612449 |
ggagaaggagagagcgatgcaaaagagatgatccgttttgtaatttttcaaggggtcaatgataattgttaaagatttgtctcatcaatgtttttgttgg |
36612350 |
T |
|
| Q |
104 |
tggagacaatttggattaagatcatatgagaaaggctcatcagagtccacagtaccatttgctttggtggagaacgaaactgctagcaaacaaacacctt |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36612349 |
tggagacaatttggattaagatcatatgagaaaggctcatcagagt-cacagtaccatttgctttggtggagaacgaaactgctagcaaacaaacacctt |
36612251 |
T |
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| Q |
204 |
ggcatcaaagttagt |
218 |
Q |
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||||||||||||||| |
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| T |
36612250 |
ggcatcaaagttagt |
36612236 |
T |
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