View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_59 (Length: 212)
Name: NF3048_low_59
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 15 - 196
Target Start/End: Original strand, 36492594 - 36492775
Alignment:
| Q |
15 |
cacagatacatagattgatgcaaatttatacatgattttcactcctggaatatctttactatatagtgacaaaatagatgacagcaactgagattgatgt |
114 |
Q |
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| T |
36492594 |
cacagatacatagattgatgcaaatttatacatgattttcactcctggaatatctttactatatagtgacaagatagatgacagcaactgagattgatgt |
36492693 |
T |
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| Q |
115 |
ctatctatgcatgccttttttgatcaactcacaaacattatttattcatgaaatttattattaagaaagagtgcatcataac |
196 |
Q |
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| T |
36492694 |
ctatctatgcatgccattttttatcaactcacaaacattatttattcatgaaatttattattaagaaagagtgcatcataac |
36492775 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 93
Target Start/End: Original strand, 36475639 - 36475714
Alignment:
| Q |
20 |
atacatagattgatgcaaatttatacatgattttcactcctggaatatctttact--atatagtgacaaaatagat |
93 |
Q |
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| T |
36475639 |
atacatagattgttgcaaatttatacatgatttccactaatgaaatatctatattacatatagtgacaagatagat |
36475714 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 130 - 193
Target Start/End: Original strand, 36475745 - 36475806
Alignment:
| Q |
130 |
ttttttgatcaactcacaaacattatttattcatgaaatttattattaagaaagagtgcatcat |
193 |
Q |
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| T |
36475745 |
ttttttgatcaacacacaa-cattatttattcatggaatttagtact-agaaagagtgcatcat |
36475806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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