View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3048_low_6 (Length: 473)
Name: NF3048_low_6
Description: NF3048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3048_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 340
Target Start/End: Complemental strand, 21559090 - 21558770
Alignment:
| Q |
20 |
ttactttctactagtttcacttcatcaaatcacttagtcatgggagacaatgttgtagtatccaatatggagctagagaggttgcttagcatgaaaggtg |
119 |
Q |
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| T |
21559090 |
ttactttctagtagtttcacttcatcaaatcacttagtcatgggagacaatgttgtagtatccaatatggagctagagaggttgcttagcatgaaaggtg |
21558991 |
T |
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| Q |
120 |
gtaaaggagaggctagctatgccaacaattcccaagcacaggtaccctcttttgctatttattttatcaagcctcttttgttaatttaactcttgttttt |
219 |
Q |
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| T |
21558990 |
gtaaaggagaggctagctatgccaacaattcccaagcacaggtaccctcttttgctatttattttatcaagcctcttttgttaatttaattcttgatttt |
21558891 |
T |
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| Q |
220 |
catatacttttatattgagctacttcatcttcctcctattctttttctttctccatttatgnnnnnnnttaacttccaagctcatttttcaatcaaaaga |
319 |
Q |
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| T |
21558890 |
catatacttttatattgagctacttcatcttcctcctattctttttctttctccatttatgaaaaaaattaacttccaagctcatttttcaatcaaaaga |
21558791 |
T |
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| Q |
320 |
gtataaatatatgaccactac |
340 |
Q |
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| T |
21558790 |
gtataaatatatgaccactac |
21558770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 20855960 - 20855855
Alignment:
| Q |
59 |
atgggagacaatgttgtagtatccaatatggagctagagaggttgcttagcatgaaaggtggtaaaggagaggctagctatgccaacaattcccaagcac |
158 |
Q |
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| T |
20855960 |
atggaagaaaatgttgttgtgtccaatttggagctggagaagttgtttagcatgaaaggaggcaaaggagaggccagctatgccaacaattcccaagcac |
20855861 |
T |
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| Q |
159 |
aggtac |
164 |
Q |
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|||||| |
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| T |
20855860 |
aggtac |
20855855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 396 - 463
Target Start/End: Complemental strand, 21558716 - 21558649
Alignment:
| Q |
396 |
gcatcacataaatttagtgtcnnnnnnnattataaatgttaacaaatttcaatggtattctacctatg |
463 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
21558716 |
gcatcacataaatctagtgtcttttttaattataaatgttaacaaatttcaatggtattctacctatg |
21558649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 59 - 164
Target Start/End: Complemental strand, 41003657 - 41003552
Alignment:
| Q |
59 |
atgggagacaatgttgtagtatccaatatggagctagagaggttgcttagcatgaaaggtggtaaaggagaggctagctatgccaacaattcccaagcac |
158 |
Q |
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|||| ||| |||||||| || |||||| ||||||| |||| |||| ||||||||||||| || ||||||||||| ||||||||||||||||||||||||| |
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| T |
41003657 |
atggaagaaaatgttgttgtgtccaatttggagctggagaagttgtttagcatgaaaggaggcaaaggagaggccagctatgccaacaattcccaagcac |
41003558 |
T |
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| Q |
159 |
aggtac |
164 |
Q |
| |
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|||||| |
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|
| T |
41003557 |
aggtac |
41003552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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