View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3049_high_22 (Length: 256)

Name: NF3049_high_22
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3049_high_22
NF3049_high_22
[»] chr1 (37 HSPs)
chr1 (14-236)||(29208096-29208318)
chr1 (22-234)||(20905287-20905503)
chr1 (42-236)||(30899526-30899722)
chr1 (20-236)||(25930451-25930670)
chr1 (22-236)||(52055400-52055618)
chr1 (73-236)||(6150625-6150787)
chr1 (30-236)||(14084699-14084906)
chr1 (20-236)||(48722368-48722588)
chr1 (21-236)||(50552343-50552561)
chr1 (21-236)||(12884135-12884352)
chr1 (118-236)||(10109668-10109786)
chr1 (118-236)||(27703527-27703645)
chr1 (20-234)||(51110101-51110318)
chr1 (118-236)||(17487281-17487399)
chr1 (59-234)||(18127937-18128111)
chr1 (26-236)||(30004905-30005112)
chr1 (20-236)||(33124628-33124848)
chr1 (122-236)||(28885669-28885785)
chr1 (118-236)||(12971354-12971472)
chr1 (119-236)||(5560432-5560549)
chr1 (118-236)||(50371082-50371200)
chr1 (19-236)||(6333514-6333732)
chr1 (164-236)||(1-73)
chr1 (118-229)||(44836726-44836837)
chr1 (118-234)||(15441238-15441355)
chr1 (118-234)||(37873762-37873878)
chr1 (172-234)||(17674354-17674416)
chr1 (161-234)||(13120866-13120939)
chr1 (22-176)||(28189243-28189403)
chr1 (118-234)||(42740058-42740174)
chr1 (157-227)||(3907459-3907528)
chr1 (172-234)||(22386837-22386899)
chr1 (172-234)||(24556808-24556870)
chr1 (144-236)||(9777387-9777480)
chr1 (20-108)||(20470576-20470667)
chr1 (21-96)||(2021937-2022013)
chr1 (20-94)||(17487424-17487501)
[»] chr3 (35 HSPs)
chr3 (20-234)||(23164572-23164786)
chr3 (15-236)||(51939554-51939776)
chr3 (23-236)||(25599084-25599298)
chr3 (20-236)||(8364020-8364238)
chr3 (20-236)||(41707053-41707271)
chr3 (21-236)||(46791695-46791912)
chr3 (118-236)||(21784782-21784900)
chr3 (26-236)||(54430408-54430618)
chr3 (118-236)||(28132733-28132851)
chr3 (30-236)||(29387752-29387960)
chr3 (118-236)||(52655121-52655239)
chr3 (118-236)||(18408139-18408257)
chr3 (21-229)||(23067730-23067940)
chr3 (119-236)||(27729767-27729884)
chr3 (122-236)||(13401411-13401525)
chr3 (118-236)||(24252569-24252686)
chr3 (118-236)||(48627027-48627145)
chr3 (118-236)||(21596283-21596401)
chr3 (118-234)||(7767011-7767127)
chr3 (156-234)||(36538186-36538264)
chr3 (124-236)||(1649829-1649941)
chr3 (173-236)||(20762052-20762115)
chr3 (119-234)||(42009262-42009377)
chr3 (156-234)||(46904728-46904806)
chr3 (157-234)||(50677314-50677391)
chr3 (122-230)||(19965884-19965992)
chr3 (118-234)||(27303135-27303251)
chr3 (126-227)||(1255057-1255158)
chr3 (118-236)||(6715397-6715505)
chr3 (20-159)||(27110882-27111023)
chr3 (119-236)||(40152127-40152245)
chr3 (121-235)||(4207357-4207465)
chr3 (118-234)||(51146886-51147001)
chr3 (119-202)||(43905875-43905958)
chr3 (29-71)||(48627179-48627221)
[»] chr2 (38 HSPs)
chr2 (20-236)||(2063657-2063871)
chr2 (20-234)||(13020270-13020487)
chr2 (15-236)||(45042231-45042458)
chr2 (31-236)||(26151745-26151952)
chr2 (20-236)||(6530508-6530725)
chr2 (18-236)||(42411556-42411775)
chr2 (30-236)||(18676309-18676517)
chr2 (31-236)||(19367417-19367624)
chr2 (19-235)||(7993480-7993697)
chr2 (30-236)||(41096536-41096745)
chr2 (31-236)||(45618835-45619042)
chr2 (25-236)||(34061854-34062063)
chr2 (126-236)||(4855948-4856059)
chr2 (119-236)||(12269374-12269490)
chr2 (20-236)||(25222171-25222389)
chr2 (142-236)||(18172938-18173032)
chr2 (156-236)||(38985707-38985787)
chr2 (118-234)||(1418858-1418973)
chr2 (142-234)||(15457472-15457564)
chr2 (142-234)||(21747230-21747322)
chr2 (118-234)||(39081346-39081462)
chr2 (119-236)||(42759754-42759863)
chr2 (157-232)||(31273168-31273242)
chr2 (142-236)||(18916052-18916146)
chr2 (118-236)||(36059903-36060021)
chr2 (119-236)||(36481353-36481460)
chr2 (172-234)||(13997316-13997378)
chr2 (172-234)||(38599404-38599466)
chr2 (142-236)||(17117643-17117729)
chr2 (172-236)||(27302526-27302590)
chr2 (122-183)||(13001597-13001658)
chr2 (142-234)||(29480637-29480729)
chr2 (29-71)||(18173089-18173131)
chr2 (29-71)||(18916204-18916246)
chr2 (20-94)||(36481254-36481331)
chr2 (30-71)||(15457373-15457414)
chr2 (137-236)||(1226264-1226364)
chr2 (27-71)||(17117787-17117831)
[»] chr7 (31 HSPs)
chr7 (20-236)||(6380082-6380300)
chr7 (20-236)||(33909915-33910130)
chr7 (21-236)||(46221701-46221917)
chr7 (20-234)||(18015582-18015796)
chr7 (20-236)||(8358292-8358509)
chr7 (30-236)||(4099826-4100034)
chr7 (26-236)||(7636324-7636540)
chr7 (118-236)||(44894027-44894145)
chr7 (118-236)||(11672532-11672652)
chr7 (32-236)||(26633227-26633429)
chr7 (124-236)||(36796370-36796482)
chr7 (157-236)||(12251286-12251365)
chr7 (119-234)||(32956724-32956839)
chr7 (21-236)||(33419115-33419331)
chr7 (118-236)||(26282540-26282658)
chr7 (118-229)||(42161125-42161238)
chr7 (142-236)||(40001694-40001788)
chr7 (144-236)||(773882-773974)
chr7 (121-236)||(41908128-41908244)
chr7 (118-234)||(36438351-36438467)
chr7 (122-234)||(9479079-9479191)
chr7 (159-236)||(3799758-3799835)
chr7 (122-231)||(40737994-40738103)
chr7 (157-234)||(18895397-18895474)
chr7 (139-236)||(44876153-44876248)
chr7 (118-236)||(1365957-1366075)
chr7 (118-232)||(42311958-42312071)
chr7 (119-224)||(25061852-25061957)
chr7 (18-150)||(12251472-12251605)
chr7 (129-236)||(30739082-30739189)
chr7 (29-71)||(26282692-26282734)
[»] chr8 (25 HSPs)
chr8 (20-236)||(13585149-13585365)
chr8 (20-236)||(43968068-43968285)
chr8 (122-236)||(27074526-27074640)
chr8 (20-236)||(3471442-3471666)
chr8 (33-236)||(44665044-44665244)
chr8 (118-236)||(18112064-18112182)
chr8 (30-236)||(18420607-18420817)
chr8 (30-236)||(7857945-7858151)
chr8 (118-229)||(42951774-42951885)
chr8 (118-236)||(43926321-43926439)
chr8 (29-234)||(32098178-32098384)
chr8 (118-236)||(34523949-34524067)
chr8 (118-234)||(23567274-23567390)
chr8 (142-236)||(12531531-12531625)
chr8 (119-236)||(5869320-5869435)
chr8 (156-234)||(39697938-39698016)
chr8 (118-234)||(3628747-3628863)
chr8 (156-236)||(29372343-29372423)
chr8 (119-236)||(30915285-30915403)
chr8 (168-236)||(1004056-1004125)
chr8 (33-150)||(3445544-3445661)
chr8 (21-95)||(27074435-27074511)
chr8 (29-71)||(34524101-34524143)
chr8 (172-234)||(35874928-35874990)
chr8 (30-108)||(42951898-42951980)
[»] chr6 (24 HSPs)
chr6 (20-236)||(57536-57754)
chr6 (30-234)||(2618214-2618419)
chr6 (119-236)||(12614714-12614831)
chr6 (118-236)||(6754154-6754272)
chr6 (20-236)||(29400989-29401206)
chr6 (118-236)||(29149351-29149469)
chr6 (118-236)||(628093-628211)
chr6 (122-236)||(3514848-3514962)
chr6 (118-236)||(7525164-7525282)
chr6 (31-236)||(6360620-6360825)
chr6 (126-236)||(1690631-1690741)
chr6 (119-234)||(3748568-3748683)
chr6 (157-236)||(31860989-31861067)
chr6 (118-236)||(30915364-30915482)
chr6 (144-236)||(14893415-14893507)
chr6 (156-236)||(29308465-29308545)
chr6 (172-234)||(21946109-21946171)
chr6 (153-236)||(22503729-22503809)
chr6 (118-171)||(24455167-24455220)
chr6 (137-236)||(350381-350481)
chr6 (118-236)||(1093039-1093156)
chr6 (29-71)||(29308617-29308659)
chr6 (20-108)||(31258582-31258674)
chr6 (15-71)||(31860861-31860917)
[»] scaffold0100 (1 HSPs)
scaffold0100 (20-236)||(46171-46388)
[»] chr4 (30 HSPs)
chr4 (20-236)||(53011563-53011778)
chr4 (30-235)||(19661238-19661444)
chr4 (20-236)||(29221619-29221839)
chr4 (20-236)||(23426164-23426377)
chr4 (20-236)||(28463586-28463804)
chr4 (18-236)||(11681740-11681961)
chr4 (18-236)||(11690019-11690240)
chr4 (30-236)||(32130788-32130995)
chr4 (29-236)||(27632257-27632464)
chr4 (118-236)||(41038197-41038316)
chr4 (118-236)||(29579828-29579946)
chr4 (119-236)||(23256543-23256660)
chr4 (124-236)||(44477993-44478105)
chr4 (64-224)||(16072489-16072648)
chr4 (20-201)||(21168905-21169088)
chr4 (118-234)||(35653980-35654096)
chr4 (118-236)||(21791545-21791663)
chr4 (142-236)||(45172643-45172736)
chr4 (158-236)||(5545317-5545395)
chr4 (118-234)||(43154788-43154904)
chr4 (142-236)||(10575521-10575615)
chr4 (119-236)||(55134157-55134274)
chr4 (118-234)||(22423632-22423748)
chr4 (142-234)||(34982196-34982288)
chr4 (137-201)||(26329065-26329129)
chr4 (30-94)||(23256453-23256521)
chr4 (172-234)||(24449128-24449190)
chr4 (20-69)||(16072261-16072310)
chr4 (22-87)||(29579698-29579766)
chr4 (20-67)||(51066754-51066802)
[»] chr5 (30 HSPs)
chr5 (20-236)||(19099312-19099531)
chr5 (122-236)||(13474582-13474696)
chr5 (119-236)||(13423813-13423930)
chr5 (118-236)||(26377772-26377890)
chr5 (118-231)||(36718570-36718683)
chr5 (20-236)||(13656057-13656276)
chr5 (134-234)||(12661273-12661373)
chr5 (118-236)||(20975933-20976051)
chr5 (118-236)||(43511566-43511684)
chr5 (142-236)||(29156162-29156256)
chr5 (118-234)||(138092-138208)
chr5 (156-236)||(42291879-42291959)
chr5 (118-236)||(4734580-4734698)
chr5 (118-236)||(10591271-10591389)
chr5 (118-225)||(27351297-27351404)
chr5 (118-236)||(17513934-17514052)
chr5 (30-178)||(8398837-8398989)
chr5 (118-193)||(26311954-26312029)
chr5 (118-236)||(40956261-40956379)
chr5 (142-236)||(5829357-5829449)
chr5 (171-234)||(18873458-18873521)
chr5 (118-236)||(40779140-40779257)
chr5 (122-227)||(23069172-23069277)
chr5 (118-201)||(931328-931411)
chr5 (158-236)||(3349727-3349805)
chr5 (173-234)||(17325847-17325909)
chr5 (118-230)||(10033494-10033607)
chr5 (15-94)||(40778690-40778773)
chr5 (29-71)||(17514097-17514139)
chr5 (174-234)||(7390400-7390460)
[»] scaffold0126 (1 HSPs)
scaffold0126 (118-236)||(16658-16776)
[»] scaffold0181 (1 HSPs)
scaffold0181 (118-236)||(17130-17248)
[»] scaffold0606 (1 HSPs)
scaffold0606 (118-230)||(8399-8511)
[»] scaffold0564 (1 HSPs)
scaffold0564 (118-236)||(1021-1127)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 14 - 236
Target Start/End: Complemental strand, 29208318 - 29208096
Alignment:
Q  14 atatgagcctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaa-tacatgttatatccttttctttcttcggtagacgtttgaannn 112  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||||| |||||| || ||||||||||||||||||||||||||| |||||||||       
T  29208318 atatgagcctcaaacaaaaaattaagtctaatactcacccccacttaaataaaaaaatatatgttatatccttttctttcttcggtacacgtttgaattt 29208219  T
Q  113 nnnnnctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatt 212  Q
         |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  29208218 tttt-ctagactctagttctcttttttgtacataaatctaatcatatcaaaccacccctaatttgtataatcatttaatcagtcaatctggaagtctatt 29208120  T
Q  213 tcattgaaagaatcacaacaatca 236  Q
    ||||||||||||||||||||||||    
T  29208119 tcattgaaagaatcacaacaatca 29208096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 20905503 - 20905287
Alignment:
Q  22 ctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaa---tacatgttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    |||||||||||||||||||||||||| ||||||| | ||||| ||||||   || ||||||||| ||||||||||||  ||| ||||||||             
T  20905503 ctcaaacaaaaaattaagtctaatactcacccccgacttaaataaaaaaaaatatatgttatattcttttctttctttagtacacgtttgagttttattt 20905404  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  20905403 ctagactctagttctcctttttgtacataaatctaatcctatcaaaccagccctaatttgtataatcacttattcagtcaatttggaagtctatttcatt 20905304  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||||||||||||    
T  20905303 gaaagaatcacaacaat 20905287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 42 - 236
Target Start/End: Original strand, 30899526 - 30899722
Alignment:
Q  42 taatacccacccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactctagttctctttttt 139  Q
    ||||||||||||||| ||||| |||||||| ||  ||||||||||||||||||||  ||| ||||||||         |||||||||||||||| |||||    
T  30899526 taatacccacccccacttaaataaaaaatatatatgttatatccttttctttctttagtacacgtttgagttttttttctagactctagttctccttttt 30899625  T
Q  140 gtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    |||||||||||  ||||||||||| ||||||||||||||||||||| ||||| |||||||||||||  |||||||||||||||||||||||||||||    
T  30899626 gtacataaatcggatcctatcaaatcacccctaatttgtataatcacttaattagtcaatttggaaagctatttcattgaaagaatcacaacaatca 30899722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 25930451 - 25930670
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccc-ccagttaaacaaaaaatacatgtt--atatccttttctttcttcggtagacgtttgaannnnnnn 116  Q
    |||||||||||||| |||||| |||||||||||| ||| ||||| |||||| | ||||   |||||||||||||| ||||||| ||||||||            
T  25930451 gcctcaaacaaaaatttaagtttaatacccaccctccacttaaataaaaaaaaaatgtgtgatatccttttcttttttcggtacacgtttgagttttttg 25930550  T
Q  117 nctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcat 216  Q
     |||||||||||||||| ||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||| ||| ||  |||||||||    
T  25930551 tctagactctagttctcatttttgtacataaatctgatcctatcaaactacccctaatttgtataatcacttaatcagtcaacttgaaaagctatttcat 25930650  T
Q  217 tgaaagaatcacaacaatca 236  Q
    |||||| |||||||||||||    
T  25930651 tgaaaggatcacaacaatca 25930670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 22 - 236
Target Start/End: Original strand, 52055400 - 52055618
Alignment:
Q  22 ctcaaacaaaaaattaagtctaatacccac-ccccagttaaacaaa---aaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    |||||| ||||||||||||||||||||||| ||||| |||||  ||   ||||| |||||||||| |||||||||||| ||| ||||||||             
T  52055400 ctcaaataaaaaattaagtctaatacccactccccacttaaatgaataaaaatatatgttatatcattttctttcttcagtatacgtttgagtttttttt 52055499  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
     ||||||||||||||| ||||||||||||||||||||| |||||||| | || |||||| |||||||| ||||||| |||||||||||  ||||||||||    
T  52055500 ttagactctagttctcctttttgtacataaatctaatcatatcaaactatccataatttatataatcacttaatcaatcaatttggaaagctatttcatt 52055599  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  52055600 gaaagaatcacaacaatca 52055618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 73 - 236
Target Start/End: Original strand, 6150625 - 6150787
Alignment:
Q  73 atgttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactctagttctcttttttgtacataaatctaatcctatcaaaccaccccta 172  Q
    ||||||||| |||||||||||||| || ||||||||         |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||    
T  6150625 atgttatattcttttctttcttcgctatacgtttga-gtttttttctagactctagttctcctttttgtacataaatcagatcctatcaaaccaccccta 6150723  T
Q  173 atttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    |||| ||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  6150724 atttatataatcatttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 6150787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 14084906 - 14084699
Alignment:
Q  30 aaaaattaagtctaatacccaccc-ccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactct 126  Q
    ||||||||| |||||||||||||| ||| ||||| |||||||| ||  |||||||| |||||||||||| ||| | |||||||        |||||||||    
T  14084906 aaaaattaaatctaatacccaccctccacttaaataaaaaatatatatgttatatcattttctttcttcagtacaggtttgaatttttt--ctagactct 14084809  T
Q  127 agttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatc 226  Q
    ||||||| ||||||||||||||||| ||||||||||| |||||||||  |||||||||| ||||||||||||||| |||  |||||||||||||||||||    
T  14084808 agttctcctttttgtacataaatctgatcctatcaaatcacccctaaaatgtataatcacttaatcagtcaatttagaaagctatttcattgaaagaatc 14084709  T
Q  227 acaacaatca 236  Q
    |||| |||||    
T  14084708 acaataatca 14084699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 48722588 - 48722368
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnn 116  Q
    ||||| ||| ||||||||| | ||||| |||||||| | ||||| |||||||| ||  ||||||||||||||||||||  ||| ||||||||            
T  48722588 gcctctaacgaaaaattaaatttaatatccaccccccacttaaataaaaaatatatatgttatatccttttctttctttagtacacgtttgagttttttt 48722489  T
Q  117 n-ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttca 215  Q
      |||||||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||    
T  48722488 ttctagactctatttctcatttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttca 48722389  T
Q  216 ttgaaagaatcacaacaatca 236  Q
    |||||| ||||||||||||||    
T  48722388 ttgaaataatcacaacaatca 48722368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 21 - 236
Target Start/End: Original strand, 50552343 - 50552561
Alignment:
Q  21 cctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaa---tacatgttatatccttttctttcttcggtagacgtttgaannnnnnn 116  Q
    |||| ||| ||||||||| |||||||||||||||| | ||||| ||||||   || |||||||||| |||||||||||  ||| ||||||||            
T  50552343 cctctaacgaaaaattaaatctaatacccaccccccacttaaataaaaaaatatatatgttatatcattttctttctttagtacacgtttgagttttttt 50552442  T
Q  117 nctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcat 216  Q
      ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||| ||||||||| ||   ||||||||    
T  50552443 g-tagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcggtcaatttgaaaagttatttcat 50552541  T
Q  217 tgaaagaatcacaacaatca 236  Q
    ||||||||||||||||||||    
T  50552542 tgaaagaatcacaacaatca 50552561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 12884352 - 12884135
Alignment:
Q  21 cctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    |||| ||| ||||||||| ||||||| ||| |||| | ||||| |||||||| ||  |||||||| |||||||||||  ||| ||||||||             
T  12884352 cctctaacgaaaaattaaatctaatatccaacccctacttaaataaaaaatatatatgttatatcattttctttctttagtacacgtttga-gttttttt 12884254  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||||||||| || ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||  ||  ||||||||||    
T  12884253 ctagactctagttttcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttaaaaagctatttcatt 12884154  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  12884153 gaaagaatcacaacaatca 12884135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 10109668 - 10109786
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| |||||||||||||||   |||||||||||||||| |||||||||||||||| |||||||||||||||||||  | ||||||||    
T  10109668 ctagactctagttctcctttttgtacataaattggatcctatcaaaccaccactaatttgtataatcacttaatcagtcaatttggaaagcaatttcatt 10109767  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  10109768 gaaagaatcacaacaatca 10109786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 27703645 - 27703527
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||||||||||||||||||| |||||||| | || ||||||||||||||| |||||||||||||| |||||||||||||||||||  |||||||||     
T  27703645 ctagactctagttctcttttttgaacataaatttgatgctatcaaaccacccccaatttgtataatcacttaatcagtcaatttggaaagctatttcatc 27703546  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  27703545 gaaagaatcacaacaatca 27703527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 51110318 - 51110101
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacc-cccagttaaacaaaaaa---tacatgttatatccttttctttcttcggtagacgtttgaannnnnn 115  Q
    ||||| ||| ||||||||| ||||||||| ||| |||| ||||| ||||||   || |||||||||| |||||||||||  ||| ||||||||           
T  51110318 gcctctaacgaaaaattaaatctaatacctaccacccacttaaataaaaaaatatatatgttatatcattttctttctttagtacacgtttga-gttttt 51110220  T
Q  116 nnctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttca 215  Q
      ||||||| ||||| || ||||||||||||||||  |||||||||||||||||||||||| |||||||| ||||||||||||||| |||  ||||||||    
T  51110219 ttctagactatagttatcctttttgtacataaatcggatcctatcaaaccacccctaatttctataatcacttaatcagtcaatttagaaagctatttca 51110120  T
Q  216 ttgaaagaatcacaacaat 234  Q
    |||||||||||||||||||    
T  51110119 ttgaaagaatcacaacaat 51110101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 17487399 - 17487281
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||| ||||||||||  |||||||||||||||||||||||| |||||||| ||||| | |||||||||||   |||||||||    
T  17487399 ctagactctagttctcctttttttacataaatcggatcctatcaaaccacccctaatttatataatcacttaataaatcaatttggaaagttatttcatt 17487300  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  17487299 gaaagaatcacaacaatca 17487281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 59 - 234
Target Start/End: Complemental strand, 18128111 - 18127937
Alignment:
Q  59 taaacaaaaaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactctagttctcttttttgtacataaatctaatccta 158  Q
    |||| |||||||| |||||||||| |||||||||||  ||| ||||||||         ||||| |||||||||| |||| |||| ||||||  ||||||    
T  18128111 taaataaaaaatatatgttatatcattttctttctttagtacacgtttgagttttttttctagattctagttctcctttt-gtacgtaaatcggatccta 18128013  T
Q  159 tcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    ||||||||||| ||||||||||||||| |||||||||||||||| ||  ||||||||||| |||||||||||||||    
T  18128012 tcaaaccacccataatttgtataatcacttaatcagtcaatttgaaaagctatttcattgcaagaatcacaacaat 18127937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 30005112 - 30004905
Alignment:
Q  26 aacaaaaaattaagtctaatacccacc-cccagttaaacaaaaaa-tacatgttatatccttttctttcttcggtagacgtttga-annnnnnnnctaga 122  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||| ||  |||||||||||||||||| ||||||| ||||||||          |||||    
T  30005112 aacaaaaaattaagtctaatacccacctcccatttaaataaaaaaatatgtgttatatccttttcttttttcggtacacgtttgagtttttttttctaga 30005013  T
Q  123 ctctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaag 222  Q
    ||||| ||||| ||||||||||||||||  |||||||||||||      |||||||||||||| ||||||| | |||||| ||  |||||||||||||||    
T  30005012 ctctacttctcctttttgtacataaatccgatcctatcaaacc------aatttgtataatcacttaatcaattaatttgaaaagctatttcattgaaag 30004919  T
Q  223 aatcacaacaatca 236  Q
    |||| |||||||||    
T  30004918 aatcgcaacaatca 30004905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 33124848 - 33124628
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccccag-ttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnn 116  Q
    ||||| ||| ||||||||| | ||||||||| |||||  ||||| |||||||| ||  ||||||||||||||||||||  ||| ||||||||            
T  33124848 gcctctaacgaaaaattaaatttaatacccatccccaacttaaataaaaaatatatatgttatatccttttctttctttagtacacgtttgagttttttt 33124749  T
Q  117 nctagactcta--gttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttc 214  Q
      |||||||||  |||||| ||||| ||||||||||  ||||||| |||||||| |||||||||||||||| ||||| |||||||||| ||  |||||||    
T  33124748 t-tagactctatagttctcctttttctacataaatcggatcctattaaaccacctctaatttgtataatcacttaataagtcaatttgaaaagctatttc 33124650  T
Q  215 attgaaagaatcacaacaatca 236  Q
    ||||||||||||||||||||||    
T  33124649 attgaaagaatcacaacaatca 33124628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 28885785 - 28885669
Alignment:
Q  122 actctagttctctttttt--gtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattga 219  Q
    ||||||||||||||||||  || ||||||||  ||||||||||||||||| ||||||||||||||| ||||||| ||||||| |||  |||||||||||     
T  28885785 actctagttctcttttttttgtgcataaatcggatcctatcaaaccacccataatttgtataatcacttaatcaatcaattttgaaagctatttcattgt 28885686  T
Q  220 aagaatcacaacaatca 236  Q
    |||||||||||||||||    
T  28885685 aagaatcacaacaatca 28885669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 12971354 - 12971472
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||| | | || |||||||||| ||  |||||||||||||| |||||||||||||| |||||||||||||||| ||  |||||||||     
T  12971354 ctagactttagttctcctatctggacataaatctgatattatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagctatttcatc 12971453  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  12971454 gaaagaatcacaacaatca 12971472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 5560432 - 5560549
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    |||||| |||||||| ||| || ||||||||||  | ||| ||||||||||| |||||||||||||| |||||||||||||||  ||   ||||||||||    
T  5560432 tagactatagttctcatttctggacataaatctggtgctaccaaaccacccccaatttgtataatcacttaatcagtcaatttaaaaagttatttcattg 5560531  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  5560532 aaagaatcacaacaatca 5560549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 50371082 - 50371200
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||| || | |||||  | || |||||||| |||||  |||||||||||||| |||||||||||||||| ||  || |||||||    
T  50371082 ctagactctagttctcctttctggatataaagttgatgctatcaaatcaccctcaatttgtataatcacttaatcagtcaatttgaaaaactgtttcatt 50371181  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  50371182 gaaagaatcacaacaatca 50371200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 6333732 - 6333514
Alignment:
Q  19 agcctcaaacaaaaaattaagtctaataccca-cccccagttaaacaaaaaa--tacatgttatatccttttctttcttcggtagacgtttgaannnnnn 115  Q
    ||||||||||||||||||| ||||||||  || |||||| ||||| ||||||  || ||||||  |  |||||||||||||||| ||||||||           
T  6333732 agcctcaaacaaaaaattatgtctaatattcatcccccatttaaataaaaaaaatatatgttacttatttttctttcttcggtacacgtttgagtttttc 6333633  T
Q  116 nnctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttca 215  Q
       ||||||||||||||| ||  ||||||||||||| || ||||||||||| || |||| |||| ||||| |||||||||||| ||||||   ||||| |    
T  6333632 tt-tagactctagttctcattcctgtacataaatctgatactatcaaaccatcc-taatctgtaaaatcacttaatcagtcaaattggaaagttatttta 6333535  T
Q  216 ttgaaagaatcacaacaatca 236  Q
    || ||||||||||||||||||    
T  6333534 ttaaaagaatcacaacaatca 6333514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 236
Target Start/End: Original strand, 1 - 73
Alignment:
Q  164 ccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    |||||| ||||||||||||||| |||||||||||||||||||    |||||||||||||||||||||||||||    
T  1 ccacccttaatttgtataatcacttaatcagtcaatttggaaagtgatttcattgaaagaatcacaacaatca 73  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 44836837 - 44836726
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||| |||||||||  ||| || |||||||| | || |||||||||||||   |||||||||||||| |||||||||||||||| ||  |||||||| |    
T  44836837 ctagattctagttctactttctgaacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcact 44836738  T
Q  218 gaaagaatcaca 229  Q
    ||||||||||||    
T  44836737 gaaagaatcaca 44836726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 15441238 - 15441355
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||| |  |||||||| |||| |||||||||||||   |||||||||||||| ||||||| |||||||  ||  ||||||||||    
T  15441238 ctagactctagttctcctttctagacataaatataatgctatcaaaccacctacaatttgtataatcacttaatcactcaatttataaagctatttcatt 15441337  T
Q  218 -gaaagaatcacaacaat 234  Q
      ||||||||||||||||    
T  15441338 aaaaagaatcacaacaat 15441355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 37873878 - 37873762
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||  ||| |  |||||||| | || |||||||||||||   |||||||||| ||| ||||||||| |||||| ||  || |||||||    
T  37873878 ctagactctagttctactttctagacataaatttgatgctatcaaaccaccatcaatttgtatagtcacttaatcagttaatttgaaaaactgtttcatt 37873779  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||||||||||||    
T  37873778 gaaagaatcacaacaat 37873762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 17674416 - 17674354
Alignment:
Q  172 aatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||| ||||||| |||||||||||||||| ||  |||||||||||||||||||||||||||    
T  17674416 aatttgaataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaat 17674354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 161 - 234
Target Start/End: Complemental strand, 13120939 - 13120866
Alignment:
Q  161 aaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    ||||||||  ||||||| ||||||| |||||||||||||||| ||  ||||||||||||||||||||| |||||    
T  13120939 aaaccaccattaatttgaataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcaccacaat 13120866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 176
Target Start/End: Original strand, 28189243 - 28189403
Alignment:
Q  22 ctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaa-------tacatgttatatccttttctttcttcggtagacgtttgaannnn 113  Q
    |||||||||||||| ||||||||||||||||||| | ||||| ||||||       || |||||||||| ||||||||||||  || ||||||||         
T  28189243 ctcaaacaaaaaatcaagtctaatacccaccccccacttaaataaaaaagaatatatatatgttatatcattttctttcttcaatacacgtttgagtttt 28189342  T
Q  114 nnnnctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaattt 176  Q
         |||||| |||||||| ||||||||||||||||| |||||||||||| ||| |||||||    
T  28189343 ttt--tagactttagttctcctttttgtacataaatctgatcctatcaaactacctctaattt 28189403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 42740058 - 42740174
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||  ||| || |||||| | | || ||||||||| |||   |||||||||||| | ||||| |||||||||| ||  ||||||||||    
T  42740058 ctagactctagttctactttctggacataagtttgatgctatcaaacaaccatcaatttgtataataacttaattagtcaatttgaaaaactatttcatt 42740157  T
Q  218 gaaagaatcacaacaat 234  Q
    ||||||||| |||||||    
T  42740158 gaaagaatcgcaacaat 42740174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 157 - 227
Target Start/End: Original strand, 3907459 - 3907528
Alignment:
Q  157 tatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatca 227  Q
    ||||||||||| || |||||||||||||||||||||| |||||||| ||   |||||||||||||||||||    
T  3907459 tatcaaaccactcc-aatttgtataatcatttaatcaatcaatttgaaaaattatttcattgaaagaatca 3907528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 234
Target Start/End: Complemental strand, 22386899 - 22386837
Alignment:
Q  172 aatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||| | ||||| |||||||||||||||| ||  |||||||||||||||||||||||||||    
T  22386899 aatttgaacaatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaat 22386837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 24556808 - 24556870
Alignment:
Q  172 aatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||| ||||||| ||||| |||||||||| ||  |||||||||| ||||||||||||||||    
T  24556808 aatttgaataatcacttaataagtcaatttgaaaaactatttcatttaaagaatcacaacaat 24556870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 236
Target Start/End: Original strand, 9777387 - 9777480
Alignment:
Q  144 ataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttc-attgaaagaatcacaacaatca 236  Q
    |||||||| || ||| ||||||||||| ||||| |||||||| | |||||||||||||| |   ||||||| ||  ||||||||||||||||||    
T  9777387 ataaatctgatgctaccaaaccacccccaatttatataatcactcaatcagtcaatttgaataactatttcaataaaaagaatcacaacaatca 9777480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 20470576 - 20470667
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttga 108  Q
    ||||| ||| ||||||||| |||||||||||||||| |  |||| |||||||| ||  ||||||||||||||||||||  ||| ||||||||    
T  20470576 gcctctaacgaaaaattaaatctaatacccaccccccacataaataaaaaatatatatgttatatccttttctttctttagtacacgtttga 20470667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 2022013 - 2021937
Alignment:
Q  21 cctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaatacatg--ttatatccttttctttcttcg 96  Q
    |||||||||||||||||||||||||||| ||||| | |||||  ||||| | |||  |||||||||||||||| ||||    
T  2022013 cctcaaacaaaaaattaagtctaatacctacccc-atttaaattaaaaaaatatgagttatatccttttcttttttcg 2021937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Complemental strand, 17487501 - 17487424
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccac-ccccagttaaacaaaaa--atacatgttatatccttttctttctt 94  Q
    ||||| ||| ||||||||| |||||||||||| ||||| ||||| |||||  ||| ||||||||| ||||||||||||    
T  17487501 gcctctaacgaaaaattaaatctaatacccaccccccacttaaataaaaaatatatatgttatattcttttctttctt 17487424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 125; Significance: 2e-64; HSPs: 35)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 23164786 - 23164572
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccc-cagttaaacaaaaaa-tacatgttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    |||||||||||||||||| |||||||||||||||| || ||||| |||||| || ||||||||||||||||||| ||| ||| ||||||||             
T  23164786 gcctcaaacaaaaaattatgtctaatacccacccctcacttaaataaaaaaatatatgttatatccttttcttttttcagtacacgtttga--gtttttt 23164689  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  23164688 ctagactctagttctcctttttgtacataaatctgatcctatcaaaccacccctaatttgtataatcacttaatcaatcaatttggaagtctatttcatt 23164589  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||||||||||||    
T  23164588 gaaagaatcacaacaat 23164572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 236
Target Start/End: Complemental strand, 51939776 - 51939554
Alignment:
Q  15 tatgagcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaann 111  Q
    |||| ||||| ||||||||||||| |||||||||||||||| | ||||| |||||||| ||  ||||||||||||||||||||  ||  ||||||||       
T  51939776 tatgggcctctaacaaaaaattaaatctaatacccaccccccacttaaataaaaaatatatatgttatatccttttctttctttagtccacgtttga--g 51939679  T
Q  112 nnnnnnctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctat 211  Q
          |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||| ||  ||||    
T  51939678 ttttttctagactctagttctcttttttgtacataaatcagatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctat 51939579  T
Q  212 ttcattgaaagaatcacaacaatca 236  Q
    |||||||||||||||||||||||||    
T  51939578 ttcattgaaagaatcacaacaatca 51939554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 25599298 - 25599084
Alignment:
Q  23 tcaaacaaaaaattaagtctaatacccaccc-ccagttaaacaaaaaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnctag 121  Q
    |||||||||||||||||||||||| | |||| ||| ||||| |||||| | ||||||||| ||||||||||||| ||| | ||||||          |||    
T  25599298 tcaaacaaaaaattaagtctaatatctaccctccacttaaataaaaaaaatatgttatattcttttctttcttcagtacaggtttgagttttttttttag 25599199  T
Q  122 actctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaa 221  Q
    |||||||||||| ||||||||||||||||| || ||||||||||||| ||||||| |||||||| |||||||||||||||| ||  ||||||||||||||    
T  25599198 actctagttctcctttttgtacataaatctgattctatcaaaccacctctaatttatataatcacttaatcagtcaatttgaaaaactatttcattgaaa 25599099  T
Q  222 gaatcacaacaatca 236  Q
    |||||||||||||||    
T  25599098 gaatcacaacaatca 25599084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 8364020 - 8364238
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnn 116  Q
    ||||| ||| ||||||||| ||||||| |||||||| | ||||| |||||||| ||  ||||||||||||||||||||  ||| ||||||||            
T  8364020 gcctctaacgaaaaattaaatctaatatccaccccccacttaaataaaaaatatatatgttatatccttttctttctttagtacacgtttga-gtttttt 8364118  T
Q  117 nctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcat 216  Q
     ||||||||| |||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||   ||||||||    
T  8364119 tctagactcttgttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagttatttcat 8364218  T
Q  217 tgaaagaatcacaacaatca 236  Q
    ||||||||||||||||||||    
T  8364219 tgaaagaatcacaacaatca 8364238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 41707271 - 41707053
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnn 116  Q
    ||||| ||| ||||||||| | |||||||||||||| | ||||| |||||||| ||  |||||||| |||||||||||  ||| ||||||||            
T  41707271 gcctctaacgaaaaattaaatttaatacccaccccccacttaaataaaaaatatatatgttatatctttttctttctttagtacacgtttga-gtttttt 41707173  T
Q  117 nctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcat 216  Q
     |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||| ||||||| |||||||||||||||| ||  |||||||||    
T  41707172 tctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgcataatcacttaatcagtcaatttgaaaagctatttcat 41707073  T
Q  217 tgaaagaatcacaacaatca 236  Q
    ||||||||||||||||||||    
T  41707072 tgaaagaatcacaacaatca 41707053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 46791912 - 46791695
Alignment:
Q  21 cctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    |||| ||| ||||||||| |||||||||||||||| | ||||| |||||||| ||  |||||| | |||||||||||  ||| ||||||||             
T  46791912 cctctaacgaaaaattaaatctaatacccaccccccacttaaataaaaaatatatatgttataacattttctttctttagtacacgtttga-gttttttt 46791814  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||| |||||||||||||||||||  ||||||||||    
T  46791813 ctagactctagttctcctttttgtacataaatcggatcctatcaaaccacctctaatttgtataatcacttaatcagtcaatttggaaaactatttcatt 46791714  T
Q  218 gaaagaatcacaacaatca 236  Q
    | |||||||||||||||||    
T  46791713 gcaagaatcacaacaatca 46791695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 21784900 - 21784782
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||||| |||||||||  ||||||||||    
T  21784900 ctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagttaatttggaaagctatttcatt 21784801  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  21784800 gaaagaatcacaacaatca 21784782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 26 - 236
Target Start/End: Original strand, 54430408 - 54430618
Alignment:
Q  26 aacaaaaaattaagtctaatacccacc-cccagttaaacaaaaaa-tacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnctagac 123  Q
    ||||||||||||||||||||||||||| |||| ||||| |||||| ||  |||||||||||||||||| ||||||| ||||||||         |||| |    
T  54430408 aacaaaaaattaagtctaatacccacctcccacttaaataaaaaaatatgtgttatatccttttcttttttcggtacacgtttga--gttttttctaggc 54430505  T
Q  124 tctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaaga 223  Q
    |||||||||| ||||||||||||||||| ||  ||||||||||||||||||||||||||||| |||||||||||||||| ||   ||||||||| |||||    
T  54430506 tctagttctcctttttgtacataaatctgatgttatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagttatttcattaaaaga 54430605  T
Q  224 atcacaacaatca 236  Q
    ||  |||||||||    
T  54430606 attgcaacaatca 54430618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 28132851 - 28132733
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||| ||||| ||||||||||||||| |||||||||||||||||||  ||||||||||    
T  28132851 ctagactctagttctcctttttgtacataaatcagatcctatcaaatcacccttaatttgtataatcacttaatcagtcaatttggaaagctatttcatt 28132752  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  28132751 gaaagaatcacaacaatca 28132733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 29387960 - 29387752
Alignment:
Q  30 aaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactct 126  Q
    ||||||||| |||||||||||||||| | ||||| |||||||| ||  |||||||| |||||||||||  ||| ||||||||          ||||||||    
T  29387960 aaaaattaaatctaatacccaccccccacttaaataaaaaatatatatgttatatcattttctttctttagtacacgtttgagtttttttt-tagactct 29387862  T
Q  127 agttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatc 226  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||| |||||||| ||   ||||||||||||||||||    
T  29387861 agttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcaatcaatttgaaaagttatttcattgaaagaatc 29387762  T
Q  227 acaacaatca 236  Q
    ||||||||||    
T  29387761 acaacaatca 29387752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 52655239 - 52655121
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| |||||||| |||||||  |||||||||||||||| |||||||||||||||| |||||||||||||||||||  ||||||||||    
T  52655239 ctagactctagttctcctttttgtatataaatcggatcctatcaaaccaccactaatttgtataatcacttaatcagtcaatttggaaagctatttcatt 52655140  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  52655139 gaaagaatcacaacaatca 52655121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 18408139 - 18408257
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||| ||  ||| | ||||    
T  18408139 ctagactttagttctcatttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctaatccatt 18408238  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  18408239 gaaagaatcacaacaatca 18408257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 21 - 229
Target Start/End: Complemental strand, 23067940 - 23067730
Alignment:
Q  21 cctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnc 118  Q
    |||| ||| ||||||||| | ||||||||||||||| ||||| |||| ||| ||  |||||||| |||||||||||  ||| ||||||||         |    
T  23067940 cctctaacgaaaaattaaatttaatacccacccccatttaaataaaatatatatatgttatatcattttctttctttagtacacgtttgagttttttttc 23067841  T
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    |||||| |||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| || | ||||||||||| ||   |||||||||     
T  23067840 tagactttagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttcaccagtcaatttgaaaagttatttcattt 23067741  T
Q  219 aaagaatcaca 229  Q
    |||||||||||    
T  23067740 aaagaatcaca 23067730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 27729884 - 27729767
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    ||||||||||||||| ||||||||||||||||  ||| |||||||||||||||||||||||||||||  |||||| |||||||||||  | |||| || |    
T  27729884 tagactctagttctcctttttgtacataaatcggatcttatcaaaccacccctaatttgtataatcacataatcaatcaatttggaaagcaatttgatcg 27729785  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  27729784 aaagaatcacaacaatca 27729767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 13401411 - 13401525
Alignment:
Q  122 actctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaa 221  Q
    |||||||||||| |||||||||||| ||   ||||||||||||||| | ||||||||||||||| |||||||||||||||| ||  ||||||||||| ||    
T  13401411 actctagttctcctttttgtacatacattcgatcctatcaaaccactcttaatttgtataatcacttaatcagtcaatttgaaaagctatttcattggaa 13401510  T
Q  222 gaatcacaacaatca 236  Q
    |||||||||||||||    
T  13401511 gaatcacaacaatca 13401525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 24252569 - 24252686
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||  ||||||||||||| ||  ||||||||||||||||| ||||||||||||||| |||||||||||||||||||   ||||||| |    
T  24252569 ctagactctagttcttctttttgtacataa-tcagatcctatcaaaccacccttaatttgtataatcacttaatcagtcaatttggaaagttatttcagt 24252667  T
Q  218 gaaagaatcacaacaatca 236  Q
    | |||||||||||||||||    
T  24252668 gcaagaatcacaacaatca 24252686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 48627145 - 48627027
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||| | | || |||||||||| || |||||| |||||| | |||||||||||||| || ||||||||||||| || |||||||||||    
T  48627145 ctagactttagttctcatatctggacataaatctgatactatcagaccaccgccaatttgtataatcacttgatcagtcaatttgaaaatctatttcatt 48627046  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  48627045 gaaagaatcacaacaatca 48627027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 21596283 - 21596401
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||| ||||| ||| || |||||||||  || |||||||||||| || |||||||||||||| |||||||||| ||||||||  ||||||||||    
T  21596283 ctagactctaattctcctttctggacataaatcagatgctatcaaaccactcccaatttgtataatcacttaatcagtcgatttggaaagctatttcatt 21596382  T
Q  218 gaaagaatcacaacaatca 236  Q
      |||||||||||||||||    
T  21596383 acaagaatcacaacaatca 21596401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 7767011 - 7767127
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||| ||||||  ||| || |||||||| | || ||||||||| |||   |||||||||||||| |||||||||||||||| ||  ||||||||||    
T  7767011 ctagactccagttctactttctggacataaatttgatgctatcaaacaaccatcaatttgtataatcacttaatcagtcaatttgaaaagctatttcatt 7767110  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||||||||||||    
T  7767111 gaaagaatcacaacaat 7767127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 36538264 - 36538186
Alignment:
Q  156 ctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||||||||||   |||||||||||||| |||||||||||||||| ||  |||||||||||||||||||||||||||    
T  36538264 ctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatcacaacaat 36538186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 1649941 - 1649829
Alignment:
Q  124 tctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaaga 223  Q
    |||||||||||||| |  ||||||||||  | |||||||| |||||| |||||||||||||| ||||||| |||||||| || ||||||||| ||||||     
T  1649941 tctagttctcttttctagacataaatctggtgctatcaaatcacccccaatttgtataatcacttaatcattcaatttgaaaatctatttcactgaaagc 1649842  T
Q  224 atcacaacaatca 236  Q
     || |||||||||    
T  1649841 ttcgcaacaatca 1649829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 173 - 236
Target Start/End: Original strand, 20762052 - 20762115
Alignment:
Q  173 atttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||||| || |||||| ||||||||||||||||||||||||||||||| ||||||||    
T  20762052 atttgtataatcacttgatcagttaatttggaagtctatttcattgaaagaatcataacaatca 20762115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 42009377 - 42009262
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    |||||| |||||||  ||| || |||||||| | || |||||||||||||   |||||||||||||| |||||||||||||||  ||   ||||||||||    
T  42009377 tagactttagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaagttatttcattg 42009278  T
Q  219 aaagaatcacaacaat 234  Q
    ||||||||||||||||    
T  42009277 aaagaatcacaacaat 42009262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 156 - 234
Target Start/End: Original strand, 46904728 - 46904806
Alignment:
Q  156 ctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||||||||||   |||||||||||||| |||||||||||||||  ||  |||||||||||||||||||||||||||    
T  46904728 ctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaaactatttcattgaaagaatcacaacaat 46904806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 50677391 - 50677314
Alignment:
Q  157 tatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    ||||||||||||   |||||||||||||| |||||||||||||||| ||  |||||||||||||| ||||||||||||    
T  50677391 tatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaacaatcacaacaat 50677314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 230
Target Start/End: Complemental strand, 19965992 - 19965884
Alignment:
Q  122 actctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaa 221  Q
    |||||| ||||| |||||| |||||||||| || ||||||||||||  | |||||||||||||| ||||| ||| || ||| ||  |||||||||| |||    
T  19965992 actctaattctcctttttggacataaatctgatgctatcaaaccactgccaatttgtataatcacttaattagttaaattgaaaagctatttcattaaaa 19965893  T
Q  222 gaatcacaa 230  Q
    |||||||||    
T  19965892 gaatcacaa 19965884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 27303135 - 27303251
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||| ||||  ||| || |||||||| | || | || ||||||||   |||||||||||||| ||||||| |||||||| ||  ||||||||||    
T  27303135 ctagactctacttctactttatggacataaatttgatgccatgaaaccaccatcaatttgtataatcacttaatcaatcaatttgaaaagctatttcatt 27303234  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||||||||||||    
T  27303235 gaaagaatcacaacaat 27303251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 227
Target Start/End: Complemental strand, 1255158 - 1255057
Alignment:
Q  126 tagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaat 225  Q
    |||||||  |||||| |||||||||| || ||||||||| |||  ||||||||||||| | |||||| |||||||| |||   |||||||||||||||||    
T  1255158 tagttcttctttttggacataaatctgatgctatcaaacgacctttaatttgtataatgacttaatcggtcaatttagaaagttatttcattgaaagaat 1255059  T
Q  226 ca 227  Q
    ||    
T  1255058 ca 1255057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 6715397 - 6715505
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| |||||||| |||||||  ||||||||||||||||  |||||||          |||||||||||||| |||   |||||||||    
T  6715397 ctagactctagttctcctttttgtatataaatcggatcctatcaaaccacctataatttg----------taatcagtcaattttgaaagttatttcatt 6715486  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||| ||||||||    
T  6715487 gaaagaatcataacaatca 6715505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 159
Target Start/End: Complemental strand, 27111023 - 27110882
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaa--atacatgttatatccttttctttcttcggtagacgtttgaannnnnnn 116  Q
    ||||| ||| ||||||||| |||||||||||||||| | ||||| |||||  ||| |||||||||| |||||||||||  ||| ||||||| |           
T  27111023 gcctctaacgaaaaattaaatctaatacccaccccctacttaaataaaaaatatatatgttatatctttttctttctttagtacacgtttg-agtttttt 27110925  T
Q  117 nctagactctagttctcttttttgtacataaatctaatcctat 159  Q
     |||||||||||||||| ||||||||||||||||  |||||||    
T  27110924 tctagactctagttctcatttttgtacataaatcgtatcctat 27110882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 40152245 - 40152127
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    ||||||||| ||||  |||||  ||||| |||| || ||| |||| || ||| |||||||||||||| |||||| ||||||||| ||  ||||||||||     
T  40152245 tagactctaattcttctttttagacatagatctgatgctaccaaatcatccccaatttgtataatcacttaatcggtcaatttgaaaaactatttcatta 40152146  T
Q  219 aaa-gaatcacaacaatca 236  Q
    ||| |||||||||||||||    
T  40152145 aaacgaatcacaacaatca 40152127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 235
Target Start/End: Complemental strand, 4207465 - 4207357
Alignment:
Q  121 gactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaa 220  Q
    ||||||||||||| |||||| |||  |||  ||| ||||||||||| ||  |||||||||||||| ||||||| |||||||||||   ||||||    ||    
T  4207465 gactctagttctcctttttggacaagaattcaatgctatcaaaccatcc--aatttgtataatcacttaatcattcaatttggaaagatatttc----aa 4207372  T
Q  221 agaatcacaacaatc 235  Q
    |||||||||||||||    
T  4207371 agaatcacaacaatc 4207357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 51146886 - 51147001
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||| ||||||||   |||||| |||||||| | || |||| ||||||||   |||||| ||| ||| |||||||||||||||  ||  |||||| |||    
T  51146886 ctagattctagttccactttttggacataaatttgatgctattaaaccaccatcaatttgaata-tcacttaatcagtcaatttaaaaaactattttatt 51146984  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||||||||||||    
T  51146985 gaaagaatcacaacaat 51147001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 119 - 202
Target Start/End: Complemental strand, 43905958 - 43905875
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttg 202  Q
    |||||| |||||||| | | || ||||||||||  | ||||||||| ||||  |||||||||||||| | ||||||||||||||    
T  43905958 tagactttagttctcctatctggacataaatctggtactatcaaactaccctcaatttgtataatcactcaatcagtcaatttg 43905875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 48627221 - 48627179
Alignment:
Q  29 aaaaaattaagtctaatacccacccccagttaaacaaaaaata 71  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  48627221 aaaaaattaactctaatacccacccccacttaaataaaaaata 48627179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 118; Significance: 3e-60; HSPs: 38)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 2063657 - 2063871
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccccagttaaacaaa-aaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnc 118  Q
    ||||||||||||||||||||||||||||||||||| | ||||| ||| ||| | || |||||||||||||||||||||||| ||||||||              
T  2063657 gcctcaaacaaaaaattaagtctaatacccacccc-acttaaataaataaaaaaatattatatccttttctttcttcggtatacgtttgagttttttt-- 2063753  T
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    |||||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  2063754 tagactctagttttcctttttgtacataaatataatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattg 2063853  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  2063854 aaagaatcacaacaatca 2063871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 13020270 - 13020487
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaa---tacatgttatatccttttctttcttcggtagacgtttgaannnnnnn 116  Q
    ||||| ||| ||||||||| | ||||||||||||||| ||||| ||||||   || ||||||||||||||||||||||  ||| ||||||||            
T  13020270 gcctctaacgaaaaattaaatttaatacccacccccacttaaataaaaaaatatatatgttatatccttttctttctttagtacacgtttgagttttttt 13020369  T
Q  117 nctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcat 216  Q
     |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  13020370 tctagactctagttctcttttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcat 13020469  T
Q  217 tgaaagaatcacaacaat 234  Q
    | ||||||||||||||||    
T  13020470 ttaaagaatcacaacaat 13020487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 45042231 - 45042458
Alignment:
Q  15 tatgagcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaa--tacatgttatatccttttctttcttcggtagacgtttgaann 111  Q
    |||| |||||||||||||||||||||||||||||||| ||  | ||||| ||||||  || |||| ||||| |||||||||||| ||| ||||||||       
T  45042231 tatgggcctcaaacaaaaaattaagtctaatacccactccttatttaaataaaaaaaatatatgtcatatcattttctttcttcagtatacgtttgagtt 45042330  T
Q  112 nnnnnnctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttgg---aagtc 208  Q
          |||||||||||||||  |||| |||||||||| | ||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||    
T  45042331 ttttttctagactctagttcttcttttcgtacataaatttgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggtgaaagtc 45042430  T
Q  209 tatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||||||||||||||||||||    
T  45042431 tatttcattgaaagaatcacaacaatca 45042458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 26151952 - 26151745
Alignment:
Q  31 aaaattaagtctaatacccacccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagact-cta 127  Q
    |||| ||| ||||||||||||||||| ||||| |||||||| ||  ||||||||||||||||||||  ||| ||||||||         ||||||| |||    
T  26151952 aaaaataaatctaatacccacccccatttaaataaaaaatatatatgttatatccttttctttctttagtatacgtttga-gtttttttctagacttcta 26151854  T
Q  128 gttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatca 227  Q
    |||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||||    
T  26151853 gttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattgaaagaatca 26151754  T
Q  228 caacaatca 236  Q
    |||||||||    
T  26151753 caacaatca 26151745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 6530508 - 6530725
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    ||||| ||| ||||||||| ||||||| ||||||||| ||||| |||||||| ||  ||||||||||||||||||||  ||||| |||| ||            
T  6530508 gcctctaacgaaaaattaaatctaatatccacccccacttaaataaaaaatatatacgttatatccttttctttctttagtagatgttt-aagttttttt 6530606  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||||||||||||||  || |||||||||||||||||||||||||||||| |||||||||||||||| ||   |||||||||    
T  6530607 ctagactctagttctcatttttgtacataaatcggatactatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaaggtatttcatt 6530706  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  6530707 gaaagaatcacaacaatca 6530725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 42411775 - 42411556
Alignment:
Q  18 gagcctcaaacaaaaaattaagtctaataccca-cccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnn 114  Q
    ||||||| ||| ||||||||| ||||||||||| |||||| ||||| |||| ||| ||  ||||||||||||||||||||  ||| ||||||||          
T  42411775 gagcctctaacgaaaaattaaatctaatacccaacccccacttaaaaaaaatatatatatgttatatccttttctttctttagtacacgtttga--gttt 42411678  T
Q  115 nnnctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttc 214  Q
       |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||| |||||||||||||  |||||||    
T  42411677 tttctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaattagtcaatttggaaagctatttc 42411578  T
Q  215 attgaaagaatcacaacaatca 236  Q
    ||| ||||||||||||||||||    
T  42411577 atttaaagaatcacaacaatca 42411556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 18676517 - 18676309
Alignment:
Q  30 aaaaattaagtctaatacccacccc-cagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactct 126  Q
    ||||||||| ||||||||||||||| || ||||| |||||||| ||  |||||||| |||||||||||  ||| ||||||||         |||||||||    
T  18676517 aaaaattaaatctaatacccacccctcacttaaataaaaaatatatatgttatatcattttctttctttagtacacgtttga-gtttttttctagactct 18676419  T
Q  127 agttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatc 226  Q
    ||||||| ||||||||||||||||  |||||||||||| |||||||||||||||||| | |||||||||||||||||||  |||||||||||||||||||    
T  18676418 agttctcctttttgtacataaatcggatcctatcaaactacccctaatttgtataataacttaatcagtcaatttggaaagctatttcattgaaagaatc 18676319  T
Q  227 acaacaatca 236  Q
    ||||||||||    
T  18676318 acaacaatca 18676309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 31 - 236
Target Start/End: Complemental strand, 19367624 - 19367417
Alignment:
Q  31 aaaattaagtctaataccca-cccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactcta 127  Q
    |||||||| ||||||||| | |||||| ||||| |||||||| ||  ||||||||||||||||||||  ||| ||||||||         ||||||||||    
T  19367624 aaaattaaatctaatacctatcccccatttaaataaaaaatatatatgttatatccttttctttctttagtacacgtttga-gtttttttctagactcta 19367526  T
Q  128 gttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatca 227  Q
    |||||| ||||||||||||||||  || |||||||||||||||||||||||||||||| |||||||||||||||| ||  ||||||||||||||||||||    
T  19367525 gttctcctttttgtacataaatcggattctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatca 19367426  T
Q  228 caacaatca 236  Q
    |||||||||    
T  19367425 caacaatca 19367417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 235
Target Start/End: Original strand, 7993480 - 7993697
Alignment:
Q  19 agcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnn 115  Q
    |||||| ||| ||||||||| | |||||||||||||| | ||||| |||||||| ||  ||||||||||||||||||||  ||| || |||||           
T  7993480 agcctctaacgaaaaattaaatttaatacccaccccctatttaaataaaaaatatatatgttatatccttttctttctttagtacacatttga--gtttt 7993577  T
Q  116 nnctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttca 215  Q
      |||||||||||||||| |||||||||||||| |  ||||||||||||||||||||||||||||||||| |||||||| ||||||||||  ||||||||    
T  7993578 ttctagactctagttctcctttttgtacataaaccggatcctatcaaaccacccctaatttgtataatcacttaatcagccaatttggaaagctatttca 7993677  T
Q  216 ttgaaagaatcacaacaatc 235  Q
    ||||||||||||||||||||    
T  7993678 ttgaaagaatcacaacaatc 7993697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 41096745 - 41096536
Alignment:
Q  30 aaaaattaagtctaatacccaccccc-agttaaacaaaaa---atacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactc 125  Q
    ||||||||| | |||||||||||||| | ||||| |||||   ||| ||||||||||||||||||||||  ||| || |||||         ||||||||    
T  41096745 aaaaattaaatttaatacccaccccccacttaaataaaaatatatatatgttatatccttttctttctttagtacacatttga-gtttttttctagactc 41096647  T
Q  126 tagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaat 225  Q
    |||||||| ||||||||||||||||  ||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||    
T  41096646 tagttctcctttttgtacataaatcagatcctatcaaatcacccctaatttgtataatcacttaatcagtcaatttggaaaactatttcattgaaagaat 41096547  T
Q  226 cacaacaatca 236  Q
    |||||||||||    
T  41096546 cacaacaatca 41096536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 45618835 - 45619042
Alignment:
Q  31 aaaattaagtctaatacccaccccc-agttaaacaaaaaa---tacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnctagact-c 125  Q
    |||| ||| |||||||||||||||| | ||||| ||||||   || ||||||||||||||||||||||  ||| ||||||||         ||||||| |    
T  45618835 aaaaataaatctaatacccaccccccatttaaataaaaaaatatatatgttatatccttttctttctttagtatacgtttga--gttttttctagacttc 45618932  T
Q  126 tagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaat 225  Q
    |||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  45618933 tagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaag-ctatttcattgaaagaat 45619031  T
Q  226 cacaacaatca 236  Q
    |||||||||||    
T  45619032 cacaacaatca 45619042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 34062063 - 34061854
Alignment:
Q  25 aaacaaaaaattaagtctaatacccacccccagttaaacaaaaaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnctagact 124  Q
    ||||||||| |||||||| ||| ||||||| | ||||| ||| || | |||||||||| |||||||||||| ||| |||| |||          ||||||    
T  34062063 aaacaaaaacttaagtctgatatccacccctacttaaataaataaaaaatgttatatctttttctttcttcagtacacgtatgagttttttt--tagact 34061966  T
Q  125 ctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaa 224  Q
     |||||||  |||||||||||||||||  |||||||||||||||| |||||||||| || | |||||||||||||||||||  |||||||||||||||||    
T  34061965 atagttcttctttttgtacataaatctggtcctatcaaaccacccataatttgtatgattacttaatcagtcaatttggaaagctatttcattgaaagaa 34061866  T
Q  225 tcacaacaatca 236  Q
    ||||||||||||    
T  34061865 tcacaacaatca 34061854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 126 - 236
Target Start/End: Original strand, 4855948 - 4856059
Alignment:
Q  126 tagttctcttttttgta-cataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaa 224  Q
    |||||||| |||||||| ||||||||  ||||||||||||||||||||||||||||||||| ||||||||| |||||||||  |||||||||||||||||    
T  4855948 tagttctcctttttgtaacataaatcagatcctatcaaaccacccctaatttgtataatcacttaatcagtgaatttggaaagctatttcattgaaagaa 4856047  T
Q  225 tcacaacaatca 236  Q
    ||||||||||||    
T  4856048 tcacaacaatca 4856059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 12269374 - 12269490
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    |||||||||||||||||||||| |||||||||  ||||||||||||||||||||||||||||||||| |||||||||  ||||||||  ||||||||||     
T  12269374 tagactctagttctcttttttgcacataaatcagatcctatcaaaccacccctaatttgtataatcacttaatcagt-gatttggaaagctatttcatta 12269472  T
Q  219 aaagaatcacaacaatca 236  Q
    ||| |||||| |||||||    
T  12269473 aaaaaatcaccacaatca 12269490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 25222171 - 25222389
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnn 116  Q
    ||||| ||| ||||||||| ||||||||| ||| || | ||||| |||||||| ||  |||||||| |||||||||||  ||| ||||||||            
T  25222171 gcctctaacgaaaaattaaatctaataccgaccgcctacttaaataaaaaatatatatgttatatcattttctttctttagtacacgtttga-gtttttt 25222269  T
Q  117 nctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcat 216  Q
     ||||||| |||||||| ||||||||||||||||  ||||||||||| ||  ||||||||||||||||| ||||| ||||||||| |||   ||||||||    
T  25222270 tctagactttagttctcctttttgtacataaatcggatcctatcaaatcattcctaatttgtataatcacttaattagtcaatttagaaagttatttcat 25222369  T
Q  217 tgaaagaatcacaacaatca 236  Q
    ||||||||||||||||||||    
T  25222370 tgaaagaatcacaacaatca 25222389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 18173032 - 18172938
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||  | |||||||||||||||||||||||||||||| ||||||| |||||||| ||  ||||||||| |||||||||||||||||||    
T  18173032 acataaatctggtactatcaaaccacccctaatttgtataatcacttaatcactcaatttgaaaagctatttcatcgaaagaatcacaacaatca 18172938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 38985787 - 38985707
Alignment:
Q  156 ctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||||| | |||||||||||||||||||||| |||||||| ||  |||||||||||||||||||||||||||||    
T  38985787 ctatcaaaccacctccaatttgtataatcatttaatcaatcaatttgaaaagctatttcattgaaagaatcacaacaatca 38985707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 1418858 - 1418973
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||  |||||  |||||| | | || |||||||||||||   |||||||||||||| |||||||||||||||| ||  ||||||||||    
T  1418858 ctagactctagttctactttttagacataatt-tgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgtaaagctatttcatt 1418956  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||||||||||||    
T  1418957 gaaagaatcacaacaat 1418973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 15457472 - 15457564
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    ||||||||||  | ||||||||| ||||| |||||||||||||| |||||||||||||||| ||  |||||| ||||||||||||||||||||    
T  15457472 acataaatctggtactatcaaactacccccaatttgtataatcacttaatcagtcaatttgaaaagctattttattgaaagaatcacaacaat 15457564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 21747322 - 21747230
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    ||||||||||  | ||||||||||||||| |||||||||||||| |||||||||||||||  ||  |||| ||||||||||||||||||||||    
T  21747322 acataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttaaaatactatgtcattgaaagaatcacaacaat 21747230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 39081346 - 39081462
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||||||||| |  ||| || |||||||| | || |||||||||||||   |||||||||||||| |||||||||||||||| ||  ||||||||||    
T  39081346 ctagactctagttttactttctggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaagctatttcatt 39081445  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||| ||||||||    
T  39081446 gaaagaattacaacaat 39081462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 42759863 - 42759754
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    ||||||||||||||| ||||||||||||||||  ||| ||||||||||||| |||||| ||        ||||||||||||||||||   ||||||||||    
T  42759863 tagactctagttctcctttttgtacataaatcggatcatatcaaaccacccataattttta--------taatcagtcaatttggaaagttatttcattg 42759772  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  42759771 aaagaatcacaacaatca 42759754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 31273242 - 31273168
Alignment:
Q  157 tatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaaca 232  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||  |||||||||| ||||||||| ||||    
T  31273242 tatcaaaccacccc-aatttgtataatcatttaatcagtcaatttggaatactatttcattaaaagaatcataaca 31273168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 18916146 - 18916052
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||  | ||||||||||| ||| |||||||||||||| ||||||| |||||||| ||  |||||||| ||||||||||||| ||||||    
T  18916146 acataaatctggtactatcaaaccatccccaatttgtataatcacttaatcaatcaatttgaaaagctatttcactgaaagaatcacagcaatca 18916052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 36060021 - 36059903
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||  |||||  ||| |||| | || |||||||||||||   |||||||||||||| ||||||||| |||||  ||  ||||||||||    
T  36060021 ctagactctagttctactttttagacaaaaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagttaatttaaaaagctatttcatt 36059922  T
Q  218 gaaagaatcacaacaatca 236  Q
    ||||||| |||||||||||    
T  36059921 gaaagaaccacaacaatca 36059903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 36481353 - 36481460
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    ||||||||| ||||| |||||||||||||||   ||||| ||||||||||||||||||||||||||| ||||          |||||  |||||||||||    
T  36481353 tagactctaattctcctttttgtacataaattggatcctttcaaaccacccctaatttgtataatcacttaa----------tggaaagctatttcattg 36481442  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  36481443 aaagaatcacaacaatca 36481460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 13997316 - 13997378
Alignment:
Q  172 aatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||| ||||||| ||||| |||||||||| ||  |||||||||||||||||||||||||||    
T  13997316 aatttgaataatcacttaatgagtcaatttgaaaaactatttcattgaaagaatcacaacaat 13997378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 38599404 - 38599466
Alignment:
Q  172 aatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||||||||||| ||||||| |||||||| ||  |||||||||||||||||||| ||||||    
T  38599404 aatttgtataatcacttaatcaatcaatttgaaaaactatttcattgaaagaatcaaaacaat 38599466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 17117729 - 17117643
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||  | ||||||||||||||| ||||||||||||||        ||||||||| ||  |||||||||||||||||||||||||||||    
T  17117729 acataaatctggtactatcaaaccacccccaatttgtataatca--------gtcaatttgaaaagctatttcattgaaagaatcacaacaatca 17117643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 27302590 - 27302526
Alignment:
Q  172 aatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    |||||||||||||| |||||| ||||||||| ||  |||| ||||| ||||||||||||||||||    
T  27302590 aatttgtataatcacttaatcggtcaatttgaaaagctatatcattaaaagaatcacaacaatca 27302526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 183
Target Start/End: Original strand, 13001597 - 13001658
Alignment:
Q  122 actctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataat 183  Q
    |||||| ||||| ||||| ||||||||| | || ||||||||||||||| ||||||||||||    
T  13001597 actctaattctcctttttatacataaatttgatgctatcaaaccacccccaatttgtataat 13001658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 234
Target Start/End: Complemental strand, 29480729 - 29480637
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||||| | || |||| ||||||||   |||||| |||| || ||| |||||||||||| ||   ||||||||||||||||||||||||||    
T  29480729 acataaatttgatgctattaaaccaccatcaatttgaataaacacttattcagtcaatttgaaaaattatttcattgaaagaatcacaacaat 29480637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 18173131 - 18173089
Alignment:
Q  29 aaaaaattaagtctaatacccacccccagttaaacaaaaaata 71  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  18173131 aaaaaattaactctaatacccacccccacttaaataaaaaata 18173089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 18916246 - 18916204
Alignment:
Q  29 aaaaaattaagtctaatacccacccccagttaaacaaaaaata 71  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  18916246 aaaaaattaactctaatacccacccccacttaaataaaaaata 18916204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 94
Target Start/End: Original strand, 36481254 - 36481331
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaataccca-cccccagttaaacaaaaa--atacatgttatatccttttctttctt 94  Q
    ||||| ||| ||||||||| ||||||||||| |||||| ||||| |||||  ||| |||||||||| |||||||||||    
T  36481254 gcctctaacgaaaaattaaatctaatacccaccccccacttaaataaaaaatatatatgttatatcattttctttctt 36481331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 71
Target Start/End: Original strand, 15457373 - 15457414
Alignment:
Q  30 aaaaattaagtctaatacccacccccagttaaacaaaaaata 71  Q
    ||||||||| ||||||||||||||||| ||||| ||||||||    
T  15457373 aaaaattaactctaatacccacccccacttaaataaaaaata 15457414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 236
Target Start/End: Complemental strand, 1226364 - 1226264
Alignment:
Q  137 tttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaa-gaatcacaacaatc 235  Q
    |||| |||||||||| || ||| ||||||||||  ||||| |||||||| | |||||| ||||||| ||   ||||||| | ||| ||||||||||||||    
T  1226364 tttggacataaatctgatgctaccaaaccaccctcaatttatataatcactcaatcagacaatttgaaaagttatttcaataaaaagaatcacaacaatc 1226265  T
Q  236 a 236  Q
    |    
T  1226264 a 1226264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 71
Target Start/End: Complemental strand, 17117831 - 17117787
Alignment:
Q  27 acaaaaaattaagtctaatacccacccccagttaaacaaaaaata 71  Q
    |||||||||||| |||||||| |||||||| ||||| ||||||||    
T  17117831 acaaaaaattaaatctaatactcacccccacttaaataaaaaata 17117787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 111; Significance: 4e-56; HSPs: 31)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 6380300 - 6380082
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaa-tacatgttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    ||||||||||||||||||||||||||| |||| ||| | ||||| |||||| || |||||||||| |||| ||||||  ||| ||||||||             
T  6380300 gcctcaaacaaaaaattaagtctaatatccactccctacttaaataaaaaaatatatgttatatcattttatttctttagtacacgtttgagtttttttt 6380201  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||  ||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||    
T  6380200 ctagactctagttcttctttttgtacatgaatctgatcctatcaaaccacccctaatttgtataatcacttaatcaatcaatttggaagtctatttcatt 6380101  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  6380100 gaaagaatcacaacaatca 6380082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 33909915 - 33910130
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccc-cagttaaacaaaaaatac-atgttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    ||||||||||||||||||||||||||||||||||| || ||||| |||||| |  ||||||||||  ||||||||||||||| ||||||||             
T  33909915 gcctcaaacaaaaaattaagtctaatacccacccctcacttaaataaaaaaaaatatgttatatc--tttctttcttcggtacacgtttga-gttttttt 33910011  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||  |||||||||||||||| ||  ||||||||||    
T  33910012 ctagactctagttctcctttttgtacataaatctgatcctatcaaatcacccctaatttgtataatcgcttaatcagtcaatttgaaaagctatttcatt 33910111  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  33910112 gaaagaatcacaacaatca 33910130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 46221917 - 46221701
Alignment:
Q  21 cctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnc 118  Q
    |||| ||| ||||||||| ||||||||||||||| | ||||| |||||||| ||  |||||||| |||||||||||  ||| ||||||||         |    
T  46221917 cctctaacgaaaaattaaatctaatacccacccctacttaaataaaaaatatatatgttatatcattttctttctttagtatacgtttga-gtttttttc 46221819  T
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    |||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||||||||  |||||||||||    
T  46221818 tagactctagttctcttttttgtacataaatcgaatcctatcaaactacccctaatttgtagaatcacttaatcagtcaatttggaaagctatttcattg 46221719  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  46221718 aaagaatcacaacaatca 46221701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 234
Target Start/End: Complemental strand, 18015796 - 18015582
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    ||||| ||| ||||||||| ||||||||||||||||| ||||| |||||||| ||  ||||||||||||||||||||  ||| | ||||||             
T  18015796 gcctctaacgaaaaattaaatctaatacccacccccacttaaataaaaaatatatatgttatatccttttctttctttagtacatgtttga--gtttttt 18015699  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||||||||| || ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||||||| |||||||||||  ||||||||||    
T  18015698 ctagactctagttttcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcaatcaatttggaaagctatttcatt 18015599  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||||||||||||    
T  18015598 gaaagaatcacaacaat 18015582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 8358509 - 8358292
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    ||||| ||||||||||||| ||||||| |||||| || ||||| |||||||| ||  |||||||| |||||||||||  ||| ||||||||             
T  8358509 gcctctaacaaaaaattaaatctaatatccaccctcacttaaataaaaaatatatatgttatatcattttctttctttagtatacgtttga-gtttttct 8358411  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||| ||||||||||||||||  |||||||||||||||||||||||| |||||||| |||||||||||||||  ||   ||| |||||    
T  8358410 ctagactttagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttatataatcacttaatcagtcaatttaaaaagttatctcatt 8358311  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  8358310 gaaagaatcacaacaatca 8358292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 4099826 - 4100034
Alignment:
Q  30 aaaaattaagtctaatacccacc-cccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactct 126  Q
    ||||||||| | ||||||||||| |||| ||||| |||||||| ||  ||||||||||||||||||||  ||| ||||||||         |||||| ||    
T  4099826 aaaaattaaatttaatacccacctcccacttaaataaaaaatatatatgttatatccttttctttctttagtacacgtttgagttttttttctagacgct 4099925  T
Q  127 agttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatc 226  Q
    | ||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||| |||||||| ||  ||||||||||||||||||     
T  4099926 aattctcctttttgtacataaatcggatc-tatcaaaccacccctaatttgtataatcacttaatcaatcaatttgaaaagctatttcattgaaagaatt 4100024  T
Q  227 acaacaatca 236  Q
    ||||||||||    
T  4100025 acaacaatca 4100034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 236
Target Start/End: Complemental strand, 7636540 - 7636324
Alignment:
Q  26 aacaaaaaattaagtctaatacccacc-cccagttaaacaaaaaa-tacatgttatatccttttctttcttcggtagacgtttgaannnnnnnn----ct 119  Q
    ||||||||||||||||||| ||||||| |||| ||||| |||||| ||  ||||||||| |||||||| ||||||| |||||| |             ||    
T  7636540 aacaaaaaattaagtctaacacccacctcccacttaaataaaaaaatatgtgttatatctttttcttttttcggtacacgtttaagtttttttttcttct 7636441  T
Q  120 agactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattga 219  Q
    |||||||| |||||  |||||||||||| ||| ||||||||||||||||||||||||||||||| | |||||||||||||||| ||  ||||||||||||    
T  7636440 agactctacttctcccttttgtacataactctgatcctatcaaaccacccctaatttgtataattacttaatcagtcaatttgaaaagctatttcattga 7636341  T
Q  220 aagaatcacaacaatca 236  Q
    ||||||| |||||||||    
T  7636340 aagaatcgcaacaatca 7636324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 44894145 - 44894027
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||  ||||||||||||||||  ||||||| ||||||||||||||||||||||||| ||||||| |||||||||||  |||||| |||    
T  44894145 ctagactatagttcttctttttgtacataaatcggatcctattaaaccacccctaatttgtataatcacttaatcaatcaatttggaaagctattttatt 44894046  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  44894045 gaaagaatcacaacaatca 44894027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 11672532 - 11672652
Alignment:
Q  118 ctagactctagttctcttttttgtacata--aatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttca 215  Q
    |||||||||||||||| ||||||||||||  ||||  ||||||||||||||| ||||||||||||||||| |||||||||||||||||||   |||||||    
T  11672532 ctagactctagttctcctttttgtacatataaatcggatcctatcaaaccactcctaatttgtataatcacttaatcagtcaatttggaaagttatttca 11672631  T
Q  216 ttgaaagaatcacaacaatca 236  Q
     ||||||||||||||||||||    
T  11672632 atgaaagaatcacaacaatca 11672652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 32 - 236
Target Start/End: Original strand, 26633227 - 26633429
Alignment:
Q  32 aaattaagtctaatacccacccccagttaaacaaaaaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactctagttc 131  Q
    ||||||||| ||||||||||||| | ||||| ||||| |||||||||  || |||||||||||||||| |||| |||         ||||||||||||||    
T  26633227 aaattaagtataatacccaccccaacttaaagaaaaattacatgttacttctttttctttcttcggtacacgtatga--gttttttctagactctagttc 26633324  T
Q  132 tcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaac 231  Q
    |  ||| || |||||||| | || |||| ||||||||   |||||||||||||| |||||||||||||||| ||  ||||||||||||||||||||||||    
T  26633325 tactttctggacataaatttgatgctataaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaac 26633424  T
Q  232 aatca 236  Q
    |||||    
T  26633425 aatca 26633429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 36796482 - 36796370
Alignment:
Q  124 tctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaaga 223  Q
    |||||||||| ||||||||||||||||  |||||||||||| |||| ||||||||||||| | |||||||||||||||||||   |||||||||||||||    
T  36796482 tctagttctcctttttgtacataaatcggatcctatcaaactacccttaatttgtataataacttaatcagtcaatttggaaaattatttcattgaaaga 36796383  T
Q  224 atcacaacaatca 236  Q
    |||||||||||||    
T  36796382 atcacaacaatca 36796370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 157 - 236
Target Start/End: Complemental strand, 12251365 - 12251286
Alignment:
Q  157 tatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12251365 tatcaaaccacccctaatttctataatcatttaatcagtcaatttggaaagctatttcattgaaagaatcacaacaatca 12251286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 32956724 - 32956839
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    ||||||||||||||| ||| || |||||||||| || ||||||||||||||| ||||| ||||||||||||||||||||||||  ||   ||||||||||    
T  32956724 tagactctagttctcctttctggacataaatctgatgctatcaaaccacccccaatttttataatcatttaatcagtcaatttataaagttatttcattg 32956823  T
Q  219 aaagaatcacaacaat 234  Q
    ||||||||||||||||    
T  32956824 aaagaatcacaacaat 32956839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 33419331 - 33419115
Alignment:
Q  21 cctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnc 118  Q
    |||| ||| ||||||||| ||||||| ||||||| | ||||| |||||||| ||  ||||||||||||||||||||   || ||||||||         |    
T  33419331 cctctaacgaaaaattaaatctaataaccacccc-acttaaataaaaaatatatatgttatatccttttctttctttaatacacgtttga-gtttttttc 33419234  T
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaa-tcagtcaatttggaagtctatttcatt 217  Q
    ||||||||||||||  ||||||||||||||||  |||||||||||| |||||||||||||||||||| |||| | |||||||||| ||   |||||||||    
T  33419233 tagactctagttcttgtttttgtacataaatcggatcctatcaaactacccctaatttgtataatcacttaattaagtcaatttgaaaagttatttcatt 33419134  T
Q  218 gaaagaatcacaacaatca 236  Q
    ||||||||||||| |||||    
T  33419133 gaaagaatcacaataatca 33419115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 26282658 - 26282540
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||| | | || ||||||||||  | ||||||||||||||| |||||||||||||| |||||||||||||||| ||  ||||||||||    
T  26282658 ctagactttagttctcctatctgcacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagctatttcatt 26282559  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  26282558 gaaagaatcacaacaatca 26282540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 42161238 - 42161125
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctat--caaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttca 215  Q
    |||||||||| ||||| |||||||||||||||   |||||||  |||||||||||||||||||||||||| || |||||| |||||||||  ||||||||    
T  42161238 ctagactctaattctcatttttgtacataaattggatcctatatcaaaccacccctaatttgtataatcacttgatcagttaatttggaaagctatttca 42161139  T
Q  216 ttgaaagaatcaca 229  Q
    ||||||||||||||    
T  42161138 ttgaaagaatcaca 42161125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 40001788 - 40001694
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||  | ||||||||||||| | |||||||||||||| |||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  40001788 acataaatctggtactatcaaaccacctccaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 40001694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 773974 - 773882
Alignment:
Q  144 ataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    |||||||| || |||||||| ||||||||||||||||||| | || ||||||||||||| ||  |||||| ||||||||||||||||||||||    
T  773974 ataaatctgatgctatcaaatcacccctaatttgtataattactttatcagtcaatttgaaaagctattttattgaaagaatcacaacaatca 773882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 236
Target Start/End: Original strand, 41908128 - 41908244
Alignment:
Q  121 gactctagttctc-ttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattga 219  Q
    |||||| |||||| ||||||| |||||||||| || || |||||||||| | |||||||| ||||| |||||||||||||| | ||  || |||||||||    
T  41908128 gactctggttctcattttttggacataaatctgatgctttcaaaccacctccaatttgtacaatcacttaatcagtcaattagaaaagctgtttcattga 41908227  T
Q  220 aagaatcacaacaatca 236  Q
    |||||||||||||||||    
T  41908228 aagaatcacaacaatca 41908244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 36438467 - 36438351
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||| ||||||||||  ||| || |||||||| | || ||||||||||||    |||||||||||||| |||||||||||||||| ||  | ||||||||    
T  36438467 ctaggctctagttctactttctggacataaatttgatgctatcaaaccactatcaatttgtataatcacttaatcagtcaatttgaaaaaccatttcatt 36438368  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||||||||||||    
T  36438367 gaaagaatcacaacaat 36438351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 9479079 - 9479191
Alignment:
Q  122 actctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaa 221  Q
    |||||||||||  ||| || |||||||| | || |||||||||||||   |||||||||||| | |||||||||||||||  ||  ||||||| ||||||    
T  9479079 actctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaaactatttcgttgaaa 9479178  T
Q  222 gaatcacaacaat 234  Q
    |||||||||||||    
T  9479179 gaatcacaacaat 9479191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 159 - 236
Target Start/End: Complemental strand, 3799835 - 3799758
Alignment:
Q  159 tcaaaccacccctaatttgtataatcatttaatcagtcaattt-ggaagtctatttcattgaaagaatcacaacaatca 236  Q
    |||||||||| | || ||||||||||||||||| || |||||| ||||| |||||||||||||||||||||||||||||    
T  3799835 tcaaaccacctccaaattgtataatcatttaataagccaattttggaag-ctatttcattgaaagaatcacaacaatca 3799758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 40738103 - 40737994
Alignment:
Q  122 actctagttct-cttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaa 220  Q
    ||||||||||| |||||||| |||||||| | || |||||||||||||   |||||||||||| | |||||||||||||||  ||  |||||| ||||||    
T  40738103 actctagttctacttttttg-acataaatttgatgctatcaaaccaccatcaatttgtataattacttaatcagtcaatttaaaaagctattttattgaa 40738005  T
Q  221 agaatcacaac 231  Q
    |||||||||||    
T  40738004 agaatcacaac 40737994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 234
Target Start/End: Complemental strand, 18895474 - 18895397
Alignment:
Q  157 tatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||||||||   ||||||||||||||| |||||||||||||||  ||   ||||||||||||||||||||||||||    
T  18895474 tatcaaaccactattaatttgtataatcaattaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaat 18895397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 44876248 - 44876153
Alignment:
Q  139 tgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||| | || |||||||||| | || ||||| || ||||||||||||||||||||| |||  |||||||||| ||||||||||||||||||    
T  44876248 tgtacataaat-tgatactatcaaaccgcacc-aatttttaaaatcatttaatcagtcaatttagaaagctatttcattaaaagaatcacaacaatca 44876153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 1365957 - 1366075
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||| | | || |||||||| |  | ||||||||||||  | |||| ||||||| | |||||||||||||||| ||   ||||||||     
T  1365957 ctagactttagttctcctatctggacataaatttggtactatcaaaccactaccaattggtataatgacttaatcagtcaatttgaaaagttatttcata 1366056  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  1366057 gaaagaatcacaacaatca 1366075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 232
Target Start/End: Original strand, 42311958 - 42312071
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||| ||||||||| || |||||||||| ||  || ||||| ||||   ||||||||||||| || || |||||||||| ||  ||||||||||    
T  42311958 ctagactctaattctcttttctggacataaatctgatgtta-caaactaccctcgatttgtataatcacttgattagtcaatttgaaaagctatttcatt 42312056  T
Q  218 gaaagaatcacaaca 232  Q
     ||||||||||||||    
T  42312057 aaaagaatcacaaca 42312071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 119 - 224
Target Start/End: Original strand, 25061852 - 25061957
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    ||||||||||||||  |||||| |||||||||| || ||||||||| |  |  |||||||| ||||| || |||||| |||||| ||  |||||||||||    
T  25061852 tagactctagttcttctttttggacataaatctgatgctatcaaactattctcaatttgtacaatcactttatcagttaatttgaaaagctatttcattg 25061951  T
Q  219 aaagaa 224  Q
    ||||||    
T  25061952 aaagaa 25061957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 12251605 - 12251472
Alignment:
Q  18 gagcctcaaacaaaaaattaagtctaatacccaccc-ccagttaaacaaaaa--atacatgttatatccttttctttcttcggtagacgtttgaannnnn 114  Q
    ||||||| | ||||||||||| |||||||||||||| ||| ||||| |||||  ||| ||||||| || |||||||||||  ||| ||||||||          
T  12251605 gagcctctatcaaaaaattaaatctaatacccaccctccacttaaataaaaaatatatatgttatctcattttctttctttagtacacgtttga--gttt 12251508  T
Q  115 nnnctagactctagttctcttttttgtacataaatc 150  Q
       |||||||||||||||| ||||||||||||||||    
T  12251507 tttctagactctagttctcctttttgtacataaatc 12251472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 236
Target Start/End: Original strand, 30739082 - 30739189
Alignment:
Q  129 ttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcac 228  Q
    ||||| ||| || |||||||||  || ||||||||||| |   ||||| |||||||| |||||||||||||||| ||   ||||||||| ||||||||||    
T  30739082 ttctcctttctggacataaatcggatgctatcaaaccatcttcaatttttataatcacttaatcagtcaatttgaaaagttatttcattaaaagaatcac 30739181  T
Q  229 aacaatca 236  Q
    ||| ||||    
T  30739182 aacgatca 30739189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 26282734 - 26282692
Alignment:
Q  29 aaaaaattaagtctaatacccacccccagttaaacaaaaaata 71  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  26282734 aaaaaattaactctaatacccacccccacttaaataaaaaata 26282692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 2e-55; HSPs: 25)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 13585149 - 13585365
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccccagttaaac-aaaaaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnc 118  Q
    ||||| ||| ||||||||| ||||||||||||||||  || ||| |||||||| |||||||||| |||||||||||  ||| ||||||||         |    
T  13585149 gcctctaacgaaaaattaaatctaatacccaccccccatttaactaaaaaatatatgttatatcattttctttctttagtacacgtttga-gtttttttc 13585247  T
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    |||||||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||  |||||||||||    
T  13585248 tagactctagttttcttttttgtacataaatcagatcctatcaaaccacccctaatttgtataatcaattaatcagtcaatttggaaagctatttcattg 13585347  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  13585348 aaagaatcacaacaatca 13585365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 43968285 - 43968068
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccc-cagttaa-acaaaaaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    ||||| ||| ||||||||| ||||||||||||||| || |||| | |||||||| ||||||||||||||||||||||  ||| ||||||||             
T  43968285 gcctctaacgaaaaattaaatctaatacccaccccacacttaataaaaaaaatatatgttatatccttttctttctttagtacacgtttga-gttttttt 43968187  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||||| ||||||||||||||||| ||||||| |||||||| ||   |||||||||    
T  43968186 ctagactctagttctcctttttgtacataaatcggatcctatcaaaccactcctaatttgtataatcacttaatcaatcaatttgaaaagttatttcatt 43968087  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  43968086 gaaagaatcacaacaatca 43968068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 27074526 - 27074640
Alignment:
Q  122 actctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaa 221  Q
    |||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||    
T  27074526 actctagtactcctttttgtacataaatctgatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttaaaagtctatttcattgaaa 27074625  T
Q  222 gaatcacaacaatca 236  Q
     ||||||||||||||    
T  27074626 aaatcacaacaatca 27074640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 3471442 - 3471666
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaataca---tgttatatccttttctttcttcggtagacgtttgaannnnnn 115  Q
    ||||||||||||||||||||| |||||||||||||| | ||||| |||||| | |   ||||||||| |||||||||||| ||| || |||||           
T  3471442 gcctcaaacaaaaaattaagtgtaatacccaccccccacttaaataaaaaaaaaaatatgttatatcattttctttcttcagtacacatttgagtttttt 3471541  T
Q  116 nnct----agactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctat 211  Q
      ||    ||| |||||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||| |||||||||||||||| ||  ||||    
T  3471542 ttctttctagaatctagttctcatttttgtacataaatgtgattctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctat 3471641  T
Q  212 ttcattgaaagaatcacaacaatca 236  Q
    |||||||||||||||||||||||||    
T  3471642 ttcattgaaagaatcacaacaatca 3471666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 33 - 236
Target Start/End: Complemental strand, 44665244 - 44665044
Alignment:
Q  33 aattaagtctaatacccacccc-cagttaaacaaaaaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactctagttc 131  Q
    |||||| ||||||||||||||| || ||||| |||||||| |||||||||| |||||||||||    | ||||||||          |||||||||||||    
T  44665244 aattaaatctaatacccacccctcacttaaataaaaaatatatgttatatctttttctttctt----acacgtttgagttttttttatagactctagttc 44665149  T
Q  132 tcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaac 231  Q
    || ||||||||||||||||  |||||||||||||||| ||||||||||| |||| |||||||||| ||||||||   |||||||||||||||||||||||    
T  44665148 tcctttttgtacataaatcggatcctatcaaaccacctctaatttgtatcatcacttaatcagtctatttggaaagttatttcattgaaagaatcacaac 44665049  T
Q  232 aatca 236  Q
    |||||    
T  44665048 aatca 44665044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 18112064 - 18112182
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||| |||||||||||||| ||||||||||||  ||| ||||||||||| ||||||||||||||||| |||||||||||||||||||  |||||| |||    
T  18112064 ctagaatctagttctcttttatgtacataaatcggatcatatcaaaccactcctaatttgtataatcacttaatcagtcaatttggaaaactattttatt 18112163  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  18112164 gaaagaatcacaacaatca 18112182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 18420817 - 18420607
Alignment:
Q  30 aaaaattaagtctaatacccaccc-ccagttaaacaaaaaatacat----gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagact 124  Q
    ||||||||| |||||||||||||| ||| ||||| |||||||| ||    |||||||| |||||||||||  ||| ||||||||         | |||||    
T  18420817 aaaaattaaatctaatacccaccctccacttaaataaaaaatatatatatgttatatcattttctttctttagtacacgtttgagtttttttcc-agact 18420719  T
Q  125 ctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaa 224  Q
    ||||||||| ||||||||||||||||  ||||||||||||||| | ||||||||||||||| |||||||||||||||| ||  || ||||||||||||||    
T  18420718 ctagttctcctttttgtacataaatcagatcctatcaaaccacacttaatttgtataatcacttaatcagtcaatttgaaaagctgtttcattgaaagaa 18420619  T
Q  225 tcacaacaatca 236  Q
    ||||||||||||    
T  18420618 tcacaacaatca 18420607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 30 - 236
Target Start/End: Original strand, 7857945 - 7858151
Alignment:
Q  30 aaaaattaagtctaatacccacccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactcta 127  Q
    ||||||||| | ||||||||||||| | ||||| |||||||| ||  |||||||| |||||||||||  ||| ||||||||         ||||||||||    
T  7857945 aaaaattaaatttaatacccacccc-acttaaataaaaaatatatatgttatatcattttctttctttagtacacgtttga-gtttttttctagactcta 7858042  T
Q  128 gttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatca 227  Q
    |||||| |||||| |||||||||  ||||||||||| ||||||||||||||||||||| |||||||||||||||||||   || |||||| |||||||||    
T  7858043 gttctcctttttgaacataaatcggatcctatcaaatcacccctaatttgtataatcacttaatcagtcaatttggaaagttaattcatttaaagaatca 7858142  T
Q  228 caacaatca 236  Q
    |||||||||    
T  7858143 caacaatca 7858151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 118 - 229
Target Start/End: Complemental strand, 42951885 - 42951774
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| ||   ||||| |||    
T  42951885 ctagactctagttctcatttttgtacataaatcgaatcctatcaaaccactcctaatttgtataatcacttaatcagtcaatttgaaaagttattttatt 42951786  T
Q  218 gaaagaatcaca 229  Q
    ||||||||||||    
T  42951785 gaaagaatcaca 42951774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 43926439 - 43926321
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||  |||||||| |||||||  ||||||||||||||||| ||||||||||||| | |||||||||||||||| ||  ||||||||||    
T  43926439 ctagactctagttctactttttgtatataaatcggatcctatcaaaccacccataatttgtataattacttaatcagtcaatttgaaaagctatttcatt 43926340  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  43926339 gaaagaatcacaacaatca 43926321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 29 - 234
Target Start/End: Complemental strand, 32098384 - 32098178
Alignment:
Q  29 aaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactc 125  Q
    ||||||||||||||||||||||||||| | ||||  |||||||| ||  ||||  || |||||||||||| ||| ||||||||         ||||||||    
T  32098384 aaaaaattaagtctaatacccaccccccacttaattaaaaaatatatatgttacttctttttctttcttcagtacacgtttga--gttttttctagactc 32098287  T
Q  126 tagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaat 225  Q
    ||||| || |||||| |||||||| | || |||||||||||| | |||||||||| |||| |||||||||||||||||||  ||||||||||||||||||    
T  32098286 tagttatcctttttggacataaatttgatgctatcaaaccactcttaatttgtatgatcacttaatcagtcaatttggaaaactatttcattgaaagaat 32098187  T
Q  226 cacaacaat 234  Q
    |||||||||    
T  32098186 cacaacaat 32098178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 34524067 - 34523949
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||| | | || ||||||||||  | ||||||||||||||| |||||||||||||| |||||||||||||||| ||  ||||||||||    
T  34524067 ctagactttagttctcctatctggacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagctatttcatt 34523968  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  34523967 gaaagaatcacaacaatca 34523949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 23567390 - 23567274
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||||| | || ||||||||||  | ||||||||||||||| |||||||||||||| |||||||||||||||| ||  ||||||||||    
T  23567390 ctagactttagttctcttatctgaacataaatctgctactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaatactatttcatt 23567291  T
Q  218 gaaagaatcacaacaat 234  Q
    ||||| |||||||||||    
T  23567290 gaaagtatcacaacaat 23567274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 12531531 - 12531625
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||  | ||||||||| ||| | |||||||||||||| |||||||||||||||  || ||||||||||||||||||||||||||||||    
T  12531531 acataaatcttgtactatcaaactacctccaatttgtataatcacttaatcagtcaatttaaaaatctatttcattgaaagaatcacaacaatca 12531625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 5869435 - 5869320
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    |||||| |||||||| ||| ||||||||||| | || ||||||||||||| | ||||| || ||||| |||||||||||||||| ||  |||||||||||    
T  5869435 tagactttagttctcctttctgtacataaat-tgatactatcaaaccaccac-aatttttaaaatcacttaatcagtcaatttgaaaagctatttcattg 5869338  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  5869337 aaagaatcacaacaatca 5869320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 156 - 234
Target Start/End: Complemental strand, 39698016 - 39697938
Alignment:
Q  156 ctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    ||||||||||||| | ||||||||| |||||||||| |||||||||| ||  |||||||||||||||||||||||||||    
T  39698016 ctatcaaaccaccaccaatttgtatgatcatttaattagtcaatttgaaaagctatttcattgaaagaatcacaacaat 39697938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 3628863 - 3628747
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||   || ||  ||||||| | || |||||||||||||  |||||||||||||||  ||||||||||||||| ||   |||||||||    
T  3628863 ctagactctagttctacattctggtcataaatttgatgctatcaaaccaccattaatttgtataatcacataatcagtcaatttgaaaagttatttcatt 3628764  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||||||||||||    
T  3628763 gaaagaatcacaacaat 3628747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 29372343 - 29372423
Alignment:
Q  156 ctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||| ||||  ||||||||||||||||||||||||||||||||||   ||||  ||||||||||| ||||||||||    
T  29372343 ctatcaaactacccacaatttgtataatcatttaatcagtcaatttggaaagttattcaattgaaagaatgacaacaatca 29372423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 30915403 - 30915285
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt- 217  Q
    ||||||||| ||||| ||| || ||||| |||| || ||| |||||| || | ||| |||||||||| |||||||||||||||| ||  ||||||||||     
T  30915403 tagactctaattctcctttctggacatagatctgatgctaccaaacctcctccaatatgtataatcacttaatcagtcaatttgaaaagctatttcatta 30915304  T
Q  218 gaaagaatcacaacaatca 236  Q
     ||||||||||||||||||    
T  30915303 aaaagaatcacaacaatca 30915285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 168 - 236
Target Start/End: Original strand, 1004056 - 1004125
Alignment:
Q  168 ccctaatttgtataatcatttaatcagtcaatttg-gaagtctatttcattgaaagaatcacaacaatca 236  Q
    |||||||||||||||||| ||||||||||||||||  ||   ||||||||||||||||||||||||||||    
T  1004056 ccctaatttgtataatcacttaatcagtcaatttgaaaaaattatttcattgaaagaatcacaacaatca 1004125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 150
Target Start/End: Original strand, 3445544 - 3445661
Alignment:
Q  33 aattaagtctaatacccacccccagttaaacaaaaa--atacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactctagtt 130  Q
    |||||| ||||||||||||||||| ||||| |||||  ||| |||||||||| |||||||||||  ||| |||||||||         ||||||||||||    
T  3445544 aattaaatctaatacccacccccacttaaataaaaaatatatatgttatatctttttctttctttagtacacgtttgaattttttt--tagactctagtt 3445641  T
Q  131 ctcttttttgtacataaatc 150  Q
    ||| ||||||||||||||||    
T  3445642 ctcctttttgtacataaatc 3445661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 27074435 - 27074511
Alignment:
Q  21 cctcaaacaaaaaattaagtctaatacccac-ccccagttaaa-caaaaaatacatgttatatccttttctttcttc 95  Q
    ||||||||||||||||||||||||||| ||| ||| | |||||  |||||||| |||||||||| ||||||||||||    
T  27074435 cctcaaacaaaaaattaagtctaatactcactccctacttaaataaaaaaatatatgttatatcattttctttcttc 27074511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 34524143 - 34524101
Alignment:
Q  29 aaaaaattaagtctaatacccacccccagttaaacaaaaaata 71  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  34524143 aaaaaattaaatctaatacccacccccacttaaataaaaaata 34524101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 35874928 - 35874990
Alignment:
Q  172 aatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||||||||||| |||||| ||||||||| ||  ||||||| | ||||||| |||||||||    
T  35874928 aatttgtataatcacttaatcggtcaatttgaaaaactatttcttagaaagaaccacaacaat 35874990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 108
Target Start/End: Complemental strand, 42951980 - 42951898
Alignment:
Q  30 aaaaattaagtctaatacccaccccc-agttaaacaaaaaa---tacatgttatatccttttctttcttcggtagacgtttga 108  Q
    ||||||||| |||||||||||||||| | ||||| ||||||   || |||||||||| |||||||||||  ||| ||||||||    
T  42951980 aaaaattaaatctaatacccaccccccacttaaataaaaaaaaatatatgttatatcattttctttctttagtacacgtttga 42951898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 57536 - 57754
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccac-ccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnn 116  Q
    |||||||||||||||||||||||||||||||| ||||| ||||| |||| ||| ||  |||||||| |||||||||||||||| ||||||||            
T  57536 gcctcaaacaaaaaattaagtctaatacccactccccacttaaataaaagatatatatgttatatcattttctttcttcggtacacgtttgagttttttt 57635  T
Q  117 nctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcat 216  Q
      || |||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||| ||||||||||||||| |||  |||||||||    
T  57636 t-taaactctagttctcctttttgtacataaatctgatcctatcaaaccacccataatttgtataatcacttaatcagtcaatttagaaagctatttcat 57734  T
Q  217 tgaaagaatcacaacaatca 236  Q
    | ||||||||||||||||||    
T  57735 tcaaagaatcacaacaatca 57754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 30 - 234
Target Start/End: Original strand, 2618214 - 2618419
Alignment:
Q  30 aaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactct 126  Q
    ||||||||| |||||||||||||||| | ||||| |||||||| ||  |||||||| |||||||||||  ||| ||||||||         ||||||| |    
T  2618214 aaaaattaaatctaatacccaccccccacttaaataaaaaatatatatgttatatcattttctttctttagtacacgtttga--gttttttctagacttt 2618311  T
Q  127 agttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatc 226  Q
    ||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  2618312 agttctcttttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattgaaagaatc 2618411  T
Q  227 acaacaat 234  Q
    ||||||||    
T  2618412 acaacaat 2618419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 119 - 236
Target Start/End: Complemental strand, 12614831 - 12614714
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    ||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||    
T  12614831 tagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcattg 12614732  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  12614731 aaagaatcacaacaatca 12614714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 6754154 - 6754272
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||| |||||||||||||||||||||||||||  |||||||||||||| |||||||||||||| ||| |||||||||||||||||||  ||||||||||    
T  6754154 ctagattctagttctcttttttgtacataaatcggatcctatcaaaccatccctaatttgtatagtcacttaatcagtcaatttggaaagctatttcatt 6754253  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  6754254 gaaagaatcacaacaatca 6754272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 29400989 - 29401206
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    ||||| ||||||||||||| | ||||||||||| ||| ||||| |||||||| ||  || ||||| |||||||||||  ||| ||||||||             
T  29400989 gcctctaacaaaaaattaaatataatacccacctccacttaaataaaaaatatatatgtcatatcattttctttctttagtacacgtttga-gttttttt 29401087  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    || |||||||||| || |||||||||||||||| ||||||||||||| |||||||||| ||||||||| |||||||||||||||| ||   |||||||||    
T  29401088 cttgactctagttttcatttttgtacataaatcgaatcctatcaaactacccctaattagtataatcacttaatcagtcaatttgaaaagttatttcatt 29401187  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  29401188 gaaagaatcacaacaatca 29401206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 29149351 - 29149469
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||||| ||||||||||||||||| |||||||||||||||||||   || ||||||    
T  29149351 ctagactctagttctcctttttgtacataaatcggatcctatcaaaccacacctaatttgtataatcacttaatcagtcaatttggaaagttagttcatt 29149450  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  29149451 gaaagaatcacaacaatca 29149469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 628211 - 628093
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||| | |||||||||| |||||  ||| ||||||||||||||||||||||||||||| |||||||||||||||| ||  ||||||||||    
T  628211 ctagactctagttcacctttttgtacacaaatcagatcttatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcatt 628112  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  628111 gaaagaatcacaacaatca 628093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 122 - 236
Target Start/End: Complemental strand, 3514962 - 3514848
Alignment:
Q  122 actctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaa 221  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||  |||||| |||||||||||  |||| |||||||||    
T  3514962 actctagttctcctttttgtacataaatcagatcctatcaaaccacccctaatttgtataatcacgtaatcattcaatttggaaagctatatcattgaaa 3514863  T
Q  222 gaatcacaacaatca 236  Q
    |||||||||||||||    
T  3514862 gaatcacaacaatca 3514848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 7525282 - 7525164
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||||||||||||  |||||||||||||||  ||||||||||||||||| ||||||||||||||| |||||||||||||||||||   ||||| |||    
T  7525282 ctagactctagttctccattttgtacataaatcggatcctatcaaaccacccataatttgtataatcacttaatcagtcaatttggaaagttattttatt 7525183  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  7525182 gaaagaatcacaacaatca 7525164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 31 - 236
Target Start/End: Original strand, 6360620 - 6360825
Alignment:
Q  31 aaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactcta 127  Q
    |||||||| ||||||| |||||||| | ||||| |||||||| ||  |||||||| |||||||||||  ||| ||||||||         ||||||||||    
T  6360620 aaaattaaatctaatatccaccccccacttaaataaaaaatatatatgttatatcattttctttctttagtacacgtttga--gttttttctagactcta 6360717  T
Q  128 gttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatca 227  Q
    ||||||||||||| |||||||||  ||||||||||||||||| ||||||||||||||| |||||||||||||||| ||   || ||||||||||||||||    
T  6360718 gttctcttttttgcacataaatcggatcctatcaaaccacccttaatttgtataatcacttaatcagtcaatttgaaaagtta-ttcattgaaagaatca 6360816  T
Q  228 caacaatca 236  Q
    |||||||||    
T  6360817 caacaatca 6360825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 1690741 - 1690631
Alignment:
Q  126 tagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaat 225  Q
    |||||||| | |||| ||||||||||  | ||||||||||||| | |||||||||||||| || |||| |||||||| || | |||||||||||||||||    
T  1690741 tagttctcctatttggacataaatctggtactatcaaaccaccaccaatttgtataatcacttgatcaatcaatttgaaaatttatttcattgaaagaat 1690642  T
Q  226 cacaacaatca 236  Q
    |||||||||||    
T  1690641 cacaacaatca 1690631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 119 - 234
Target Start/End: Complemental strand, 3748683 - 3748568
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    |||| |||||||||  |||||| |||||||| | || |||||||||| ||   |||||||||||||| ||||||| |||||||| ||  |||||||||||    
T  3748683 tagattctagttctactttttggacataaatttgatgctatcaaaccgccatcaatttgtataatcacttaatcaatcaatttgaaaagctatttcattg 3748584  T
Q  219 aaagaatcacaacaat 234  Q
    ||||||||||||||||    
T  3748583 aaagaatcacaacaat 3748568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 157 - 236
Target Start/End: Original strand, 31860989 - 31861067
Alignment:
Q  157 tatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    |||||||||||||| |||||||||||| | |||||||||||||||| ||  |||||||||||||||||||||||||||||    
T  31860989 tatcaaaccacccc-aatttgtataattacttaatcagtcaatttgaaaagctatttcattgaaagaatcacaacaatca 31861067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 30915482 - 30915364
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||  ||| || |||||||| | || |||||||||| ||   |||||||||||| | |||||||||||||||| ||  |||||| |||    
T  30915482 ctagactctagttctactttctggacataaatttgatgctatcaaacccccatcaatttgtataattacttaatcagtcaatttgaaaagctatttaatt 30915383  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  30915382 gaaagaatcacaacaatca 30915364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 236
Target Start/End: Complemental strand, 14893507 - 14893415
Alignment:
Q  144 ataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    |||||||| || ||||||||| || |  |||||||||||| | |||||||||||||||| ||  ||||||| || ||||||||||||||||||    
T  14893507 ataaatctgatgctatcaaacaactctgaatttgtataattacttaatcagtcaatttgaaaaactatttcgttaaaagaatcacaacaatca 14893415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 29308545 - 29308465
Alignment:
Q  156 ctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||||  | |||| ||||||| | |||||||||||||||| ||  |||||||||||||  ||||||||||||||    
T  29308545 ctatcaaaccactaccaattggtataatgacttaatcagtcaatttgaaaaactatttcattgaagtaatcacaacaatca 29308465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 21946109 - 21946171
Alignment:
Q  172 aatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||||||||||| |||||||||| ||||| ||  ||||||||||||||||| || ||||||    
T  21946109 aatttgtataatcacttaatcagtctatttgaaaagctatttcattgaaagaaccataacaat 21946171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 153 - 236
Target Start/End: Original strand, 22503729 - 22503809
Alignment:
Q  153 atcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||||||| | |||||   ||||||| |||||||||||||||| ||  ||||||| |||||||||| | ||||||||    
T  22503729 atcctatcaaaccactcataatt---ataatcacttaatcagtcaatttgaaaaactatttcgttgaaagaattaaaacaatca 22503809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 171
Target Start/End: Original strand, 24455167 - 24455220
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccct 171  Q
    |||||||||||||||| ||||| || |||||||  |||||||||||||||||||    
T  24455167 ctagactctagttctcctttttatatataaatcggatcctatcaaaccacccct 24455220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 236
Target Start/End: Original strand, 350381 - 350481
Alignment:
Q  137 tttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttc-attgaaagaatcacaacaatc 235  Q
    |||| |||||||| | || |||||||||||||   ||||| |||||||| | ||||||||||||| |||  ||||||| ||  |||||||||||||||||    
T  350381 tttggacataaatatgatgctatcaaaccaccatcaatttatataatcactcaatcagtcaatttcgaaagctatttcaataaaaagaatcacaacaatc 350480  T
Q  236 a 236  Q
    |    
T  350481 a 350481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 1093156 - 1093039
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||| | | || |||||||| |  | ||||||||||||  | |||| ||||||| | | |||||||||||||  ||  |||||||||     
T  1093156 ctagactttagttctcctatctggacataaatttggtactatcaaaccactaccaattggtataatgactaaatcagtcaatttaaaaagctatttcat- 1093058  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  1093057 gaaagaatcacaacaatca 1093039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 29308659 - 29308617
Alignment:
Q  29 aaaaaattaagtctaatacccacccccagttaaacaaaaaata 71  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  29308659 aaaaaattaactctaatacccacccccacttaaataaaaaata 29308617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 31258674 - 31258582
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc--agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttga 108  Q
    ||||| ||| ||||||||| ||||||||||||||||  |  |||| |||||||| ||  ||||||||||||||||||||  ||| ||||||||    
T  31258674 gcctctaacgaaaaattaaatctaatacccacccccccacataaataaaaaatatatatgttatatccttttctttctttagtacacgtttga 31258582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 71
Target Start/End: Original strand, 31860861 - 31860917
Alignment:
Q  15 tatgagcctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaata 71  Q
    |||| |||| ||| |||||||||| |||||||||||||||||  |||| ||||||||    
T  31860861 tatgggcctaaaaaaaaaaattaactctaatacccacccccacctaaataaaaaata 31860917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 46388 - 46171
Alignment:
Q  20 gcctcaaacaaaaaa-ttaagtctaatacccacccccagttaaacaaaaaataca-tgttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    ||||||||||||||| ||||||||||||||||| | || ||||| |||||| | | ||||||||| |||| ||||||||||| || ||||||            
T  46388 gcctcaaacaaaaaaattaagtctaatacccacacacacttaaataaaaaaaaaaatgttatatcattttatttcttcggtacacatttgaattttttt- 46290  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||| |||||| |||| ||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||||||||||||    
T  46289 ctagactctagttctcatttttatacatatatctgatcctatcaaaccacccataatttggataatcacttaatcagtcaatttggaagtctatttcatt 46190  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||| ||||||||||||||    
T  46189 gaaataatcacaacaatca 46171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 53011563 - 53011778
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaataccca-cccccagttaaacaaaaaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnc 118  Q
    ||||| ||| ||||||||| ||||||||||| |||||| ||||| |||||||| |||||||||| |||||||||||  ||| ||||||||         |    
T  53011563 gcctctaacgaaaaattaaatctaatacccatcccccatttaaataaaaaatatatgttatatcattttctttctttagtacacgtttga--gttttttc 53011660  T
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    || |||||| ||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||     
T  53011661 taaactctaattctcctttttgtacataaatcagatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcatta 53011760  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  53011761 aaagaatcacaacaatca 53011778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 30 - 235
Target Start/End: Original strand, 19661238 - 19661444
Alignment:
Q  30 aaaaattaagtctaataccca-cccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactct 126  Q
    ||||||||| | ||||||||| |||||| ||||| |||||||| ||  ||||||||||||||||||||  ||| ||||||||         |||||||||    
T  19661238 aaaaattaaatttaatacccatcccccacttaaataaaaaatatatatgttatatccttttctttctttagtacacgtttga--gttttttctagactct 19661335  T
Q  127 agttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatc 226  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||| |    
T  19661336 agttctcatttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcattgaaagaaac 19661435  T
Q  227 acaacaatc 235  Q
    |||||||||    
T  19661436 acaacaatc 19661444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 29221839 - 29221619
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaa----tacatgttatatccttttctttcttcggtagacgtttgaannnnn 114  Q
    ||||||||||||||||||||| |||||||||||||| | ||||| ||||||    || |||||||||||||||||||||||  |  ||||||||          
T  29221839 gcctcaaacaaaaaattaagtttaatacccaccccccacttaaataaaaaaaatatatatgttatatccttttctttcttcatttcacgtttga-gtttt 29221741  T
Q  115 nnnctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttc 214  Q
       |||||||||| ||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||| |||| | |||||||||||||||||||||    
T  29221740 tttctagactctaattctcgtttttgtacataaatctgatcctatcaaaccactcttaatttgtataatcacttaaacggtcaatttggaagtctatttc 29221641  T
Q  215 attgaaagaatcacaacaatca 236  Q
    |||||| |||||||||||||||    
T  29221640 attgaaggaatcacaacaatca 29221619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 23426377 - 23426164
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnc 118  Q
    ||||| ||| ||||||||| |||||||||||||||| | ||||| | |   || ||||||||| ||||||||||||  ||| ||||||||         |    
T  23426377 gcctctaacgaaaaattaaatctaatacccaccccctacttaaatata---tatatgttatatacttttctttctttagtatacgtttga-gtttttttc 23426282  T
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    ||||||||||||||| ||||||||||||||||  |||||||||||||||| |||||||||||||||| |||||||||||||||||||  |||||||||||    
T  23426281 tagactctagttctcctttttgtacataaatcggatcctatcaaaccacctctaatttgtataatcacttaatcagtcaatttggaaagctatttcattg 23426182  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  23426181 aaagaatcacaacaatca 23426164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 28463804 - 28463586
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnn 116  Q
    ||||| ||| ||||||||| |||||||||||||||| | ||||| |||||||| ||  ||||||||||||||||||||  ||| ||||||||            
T  28463804 gcctctaacgaaaaattaaatctaatacccaccccccacttaaataaaaaatatatatgttatatccttttctttctttagtaaacgtttga-gtttttt 28463706  T
Q  117 nctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcat 216  Q
     |||||||||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||| |||| ||| ||  |||||||||    
T  28463705 tctagactctagttctcctttttgtacataaatcggatcttatcaaaccacccctaatttgtataatcacttaatcaatcaagttgaaaagctatttcat 28463606  T
Q  217 tgaaagaatcacaacaatca 236  Q
    ||||| ||||||||||||||    
T  28463605 tgaaaaaatcacaacaatca 28463586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 11681961 - 11681740
Alignment:
Q  18 gagcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacatgt--tatatccttttctttcttcggtagacgtttgaannnnn 114  Q
    ||||||| ||| ||||||||| |||||||||||||||| | ||||| |||||||| || |  ||||| ||||||||||||  ||| ||||||||          
T  11681961 gagcctctaacgaaaaattaaatctaatacccaccccccacttaaataaaaaatatatatattatattcttttctttctttagtacacgtttga-gtttt 11681863  T
Q  115 nnnctagactctagttctc-ttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctattt 213  Q
       |||||||||||||||| |||||| ||||||||||  |||||||||||||||||||||||| |||||||| |||||||||||||||||||   |||||    
T  11681862 tttctagactctagttctccttttttttacataaatcggatcctatcaaaccacccctaatttttataatcacttaatcagtcaatttggaaagttattt 11681763  T
Q  214 cattgaaagaatcacaacaatca 236  Q
    |||||||||||||||||||||||    
T  11681762 cattgaaagaatcacaacaatca 11681740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 11690240 - 11690019
Alignment:
Q  18 gagcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaatacatgt--tatatccttttctttcttcggtagacgtttgaannnnn 114  Q
    ||||||| ||| ||||||||| |||||||||||||||| | ||||| |||||||| || |  ||||| ||||||||||||  ||| ||||||||          
T  11690240 gagcctctaacgaaaaattaaatctaatacccaccccccacttaaataaaaaatatatatattatattcttttctttctttagtacacgtttga-gtttt 11690142  T
Q  115 nnnctagactctagttctc-ttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctattt 213  Q
       |||||||||||||||| |||||| ||||||||||  |||||||||||||||||||||||| |||||||| |||||||||||||||||||   |||||    
T  11690141 tttctagactctagttctccttttttttacataaatcggatcctatcaaaccacccctaatttttataatcacttaatcagtcaatttggaaagttattt 11690042  T
Q  214 cattgaaagaatcacaacaatca 236  Q
    |||||||||||||||||||||||    
T  11690041 cattgaaagaatcacaacaatca 11690019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 30 - 236
Target Start/End: Complemental strand, 32130995 - 32130788
Alignment:
Q  30 aaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactct 126  Q
    ||||||||| |||||||||||||||| | ||||| |||||||| ||  |||||||| |||||||||||  |||  |||||||         |||||| ||    
T  32130995 aaaaattaaatctaatacccaccccccacttaaataaaaaatatatatgttatatcattttctttctttagtacccgtttga--gttttttctagacact 32130898  T
Q  127 agttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatc 226  Q
    ||||||  ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||| ||  |||||||||||||||||||    
T  32130897 agttcttctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaaactatttcattgaaagaatc 32130798  T
Q  227 acaacaatca 236  Q
    ||||||||||    
T  32130797 acaacaatca 32130788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 29 - 236
Target Start/End: Original strand, 27632257 - 27632464
Alignment:
Q  29 aaaaaattaagtctaataccca-cccccagttaaacaaaaaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactcta 127  Q
    |||| |||||| |||||||||| ||||| |||||| |||||| | |||||||||  |||||||||||| ||| ||||||||         ||||| ||||    
T  27632257 aaaatattaagactaatacccatccccctgttaaataaaaaaaatatgttatataattttctttcttcagtacacgtttga-gtttttttctagattcta 27632355  T
Q  128 gttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatca 227  Q
    |||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||| ||||| |||||||||| ||  ||| ||||||||||||||||    
T  27632356 gttctcctttttgtacataaatttgatcctatcaaaccacccctaatttgtataatcacttaattagtcaatttgaaaagctacttcattgaaagaatca 27632455  T
Q  228 caacaatca 236  Q
    || ||||||    
T  27632456 catcaatca 27632464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 41038197 - 41038316
Alignment:
Q  118 ctagactctagttctctttt-ttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcat 216  Q
    ||||||||||||| | |||| ||||||||||||| |||||||||||| ||||||||||||||||||||| |||||||||||||||||||  |||||||||    
T  41038197 ctagactctagttttttttttttgtacataaatcgaatcctatcaaatcacccctaatttgtataatcacttaatcagtcaatttggaaaactatttcat 41038296  T
Q  217 tgaaagaatcacaacaatca 236  Q
    ||||||||||||||||||||    
T  41038297 tgaaagaatcacaacaatca 41038316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 29579828 - 29579946
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||| | |||||||||||| ||| ||  |||||||| |    
T  29579828 ctagactctagttctattttttgtacataaatctgatcctatcaaaccacccataatttgtataattaattaatcagtcaaattgaaaagctatttcaat 29579927  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  29579928 gaaagaatcacaacaatca 29579946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 23256543 - 23256660
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    ||||||| ||||||| ||||||||||||||||  |||||||||||||||||||||||||||||| || ||||||||||||||| |||  |||||||| ||    
T  23256543 tagactccagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataaccacttaatcagtcaatttagaaagctatttcaatg 23256642  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  23256643 aaagaatcacaacaatca 23256660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 124 - 236
Target Start/End: Original strand, 44477993 - 44478105
Alignment:
Q  124 tctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaaga 223  Q
    ||||||| || ||||||||||||||||  ||||||||||||||||| ||||||||||||||| | |||||||||||||||||  ||||||||||||||||    
T  44477993 tctagttatcatttttgtacataaatcagatcctatcaaaccacccataatttgtataatcactaaatcagtcaatttggaaagctatttcattgaaaga 44478092  T
Q  224 atcacaacaatca 236  Q
    |||||||||||||    
T  44478093 atcacaacaatca 44478105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 64 - 224
Target Start/End: Original strand, 16072489 - 16072648
Alignment:
Q  64 aaaaaatacatgttatatccttttctttcttcggtagacgtttgaannnnnnnnctagactctagttctcttttttgtacataaatctaatcctatcaaa 163  Q
    |||||| | |||||||||| |||||||||||||||| ||||||||         |||  |||||| |||| ||||||||||||||| | |||||||||||    
T  16072489 aaaaaaaaaatgttatatcattttctttcttcggtacacgtttga-gtttttttctaagctctagatctcctttttgtacataaatttgatcctatcaaa 16072587  T
Q  164 ccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaa 224  Q
    ||| ||||||||||||||||||||||||||||||||||| ||  |||||||| ||||||||    
T  16072588 ccatccctaatttgtataatcatttaatcagtcaatttgaaaaactatttcaatgaaagaa 16072648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 21168905 - 21169088
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccc-cagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnn 116  Q
    ||||| ||| ||||||||| |||||| |||||||| || ||||| |||||||| ||  |||||| |||||||||||||  ||| ||||||||            
T  21168905 gcctctaacgaaaaattaaatctaatgcccaccccacacttaaataaaaaatatatatgttataaccttttctttcttttgtacacgtttga-gtttttt 21169003  T
Q  117 nctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaattt 201  Q
     |||||||||||||||| ||||||||||||||||  ||||||||||| ||||||||||||||||||||| ||||| |||||||||    
T  21169004 tctagactctagttctcctttttgtacataaatcggatcctatcaaatcacccctaatttgtataatcaattaatgagtcaattt 21169088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 35654096 - 35653980
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||  ||| || |||||||| | || |||||||||||||   |||||||||||||| ||||||| |||||||| ||  ||||||||||    
T  35654096 ctagactctagttctactttctggacataaatatgatgctatcaaaccaccatcaatttgtataatcacttaatcaatcaatttgaaaagctatttcatt 35653997  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||||||||||||    
T  35653996 gaaagaatcacaacaat 35653980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 21791663 - 21791545
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||| || |||||||| | || | |||||||||||   ||| |||||||||| |||||||||||||||| ||   |||||||||    
T  21791663 ctagactctagttctcctttctgaacataaatttgatgccatcaaaccaccttcaatgtgtataatcacttaatcagtcaatttgaaaagttatttcatt 21791564  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  21791563 gaaagaatcacaacaatca 21791545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 45172736 - 45172643
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||  | |||||||||||||| ||||||||||||||| |||||||||||||||| ||  ||||||||| |||||||||||||||||||    
T  45172736 acataaatctggtactatcaaaccaccc-taatttgtataatcacttaatcagtcaatttgaaaagctatttcatggaaagaatcacaacaatca 45172643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 5545317 - 5545395
Alignment:
Q  158 atcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||| | |||||||||||||| |||||| ||||||||||||  |||||||||| ||||||||||||||||||    
T  5545317 atcaaaccaccaccaatttgtataatcacttaatcggtcaatttggaaagctatttcattaaaagaatcacaacaatca 5545395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 118 - 234
Target Start/End: Complemental strand, 43154904 - 43154788
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||| |||||||||  |||||| |||||||| | || |||||||||||||   |||||||||||||| |||||||||||||||  ||   |||||||||    
T  43154904 ctagattctagttctactttttggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttaaaaagttatttcatt 43154805  T
Q  218 gaaagaatcacaacaat 234  Q
     ||||||||||||||||    
T  43154804 aaaagaatcacaacaat 43154788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 10575615 - 10575521
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    |||||||| | || ||||||||||||||  || ||||||||||| ||||||||||||||| |||   ||||||||||||| ||||||||||||||    
T  10575615 acataaattttatgctatcaaaccaccctcaacttgtataatcacttaatcagtcaatttagaaagttatttcattgaaataatcacaacaatca 10575521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 55134157 - 55134274
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    |||||| |||||||||| | || |||||||| |  | ||||||||||||  | |||| ||||||| | |||||||||||||||| ||  ||||||||| |    
T  55134157 tagactttagttctcttatctggacataaatttggtactatcaaaccactaccaattggtataatgacttaatcagtcaatttgaaaagctatttcatag 55134256  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  55134257 aaagaatcacaacaatca 55134274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 22423632 - 22423748
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||  ||| || |||||||| | || |||||||||||||   ||||||||| |||| ||||||| |||||||| ||  |||||| |||    
T  22423632 ctagactctagttctactttctggacataaatttgatgctatcaaaccaccatcaatttgtatgatcacttaatcaatcaatttgaaaaactattttatt 22423731  T
Q  218 gaaagaatcacaacaat 234  Q
    |||||||||| ||||||    
T  22423732 gaaagaatcaaaacaat 22423748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 142 - 234
Target Start/End: Original strand, 34982196 - 34982288
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    ||||||||||  | ||| ||||||| ||| |||||||||||||| |||||||||||||| | ||  ||||||| |||||||||||||||||||    
T  34982196 acataaatctggtactaacaaaccatccccaatttgtataatcacttaatcagtcaattggaaaaactatttcgttgaaagaatcacaacaat 34982288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 137 - 201
Target Start/End: Complemental strand, 26329129 - 26329065
Alignment:
Q  137 tttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaattt 201  Q
    |||| |||||||||| || ||| ||||||||| | ||||| |||||||||| |||||||||||||    
T  26329129 tttggacataaatctgatgctaccaaaccacctccaatttatataatcattcaatcagtcaattt 26329065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 23256453 - 23256521
Alignment:
Q  30 aaaaattaagtctaatacccacccccagttaaacaaaaa----atacatgttatatccttttctttctt 94  Q
    ||||||||| | ||||| ||||||||| |||||||||||    ||| ||||||||||||||||||||||    
T  23256453 aaaaattaaatataatatccacccccacttaaacaaaaaaaatatatatgttatatccttttctttctt 23256521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 172 - 234
Target Start/End: Original strand, 24449128 - 24449190
Alignment:
Q  172 aatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||||||||||| |||||| ||||||||| ||  ||||||| | ||||||| |||||||||    
T  24449128 aatttgtataatcacttaatcggtcaatttgaaaaactatttcttagaaagaaccacaacaat 24449190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 16072261 - 16072310
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaa 69  Q
    |||| ||| ||||||||||||||||||||||||||||  |||| ||||||    
T  16072261 gccttaaataaaaaattaagtctaatacccacccccacataaataaaaaa 16072310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 29579698 - 29579766
Alignment:
Q  22 ctcaaacaaaaaattaagtctaataccca-cccccagttaa--acaaaaaatacatgttatatcctttt 87  Q
    |||||||||||||||||||||||| | || |||||| ||||  | |||||||| |||||||||||||||    
T  29579698 ctcaaacaaaaaattaagtctaatgctcaccccccacttaaataaaaaaaatatatgttatatcctttt 29579766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 51066802 - 51066754
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccac-ccccagttaaacaaaa 67  Q
    ||||||||||||||||||||||||||| |||| ||||| ||||| ||||    
T  51066802 gcctcaaacaaaaaattaagtctaatatccactccccatttaaataaaa 51066754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 2e-42; HSPs: 30)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 19099531 - 19099312
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaaaaaataca-tgttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    |||||||||||||||||||||||||||||||||||| | ||||| |||||| |   ||||||||||||||| || ||||| | | ||||||             
T  19099531 gcctcaaacaaaaaattaagtctaatacccaccccccatttaaataaaaaaaaatgtgttatatccttttcctttttcggcacatgtttgagtttttttt 19099432  T
Q  118 ct-agactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcat 216  Q
     | ||||| |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||  ||  |||||||||    
T  19099431 tttagactatagttctcctttttgtacataaatctgatcctatcaaaccatccctaatttgtataatcacttaatcagtcaatttaaaaagctatttcat 19099332  T
Q  217 tgaaagaatcacaacaatca 236  Q
    ||||||||||||||||||||    
T  19099331 tgaaagaatcacaacaatca 19099312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 13474582 - 13474696
Alignment:
Q  122 actctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaa 221  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||| ||   | |||||||||||    
T  13474582 actctagttctcttttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagttgtttcattgaaa 13474681  T
Q  222 gaatcacaacaatca 236  Q
    |||||||||||||||    
T  13474682 gaatcacaacaatca 13474696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 13423813 - 13423930
Alignment:
Q  119 tagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattg 218  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||||||||| ||||||| ||||||| |||  |||||||||||    
T  13423813 tagactctagttctcttttttgtacataaatcggatcctatcaaaccattcctaatttgtataatcacttaatcaatcaatttagaaagctatttcattg 13423912  T
Q  219 aaagaatcacaacaatca 236  Q
    ||||||||||||||||||    
T  13423913 aaagaatcacaacaatca 13423930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 26377890 - 26377772
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttg-gaagtctatttcat 216  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| ||| ||||||||| || |||| |||||||||    
T  26377890 ctagactctagttctcctttttgtacataaatcagatcctatcaaaccacccctaatttgtataatcacttattcagtcaatgtgagaag-ctatttcat 26377792  T
Q  217 tgaaagaatcacaacaatca 236  Q
    ||||||||||||||||||||    
T  26377791 tgaaagaatcacaacaatca 26377772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 118 - 231
Target Start/End: Complemental strand, 36718683 - 36718570
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||||||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||   ||||| |||    
T  36718683 ctagactctagttctcctttttgtacatgaatcggatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttgtaaagttattttatt 36718584  T
Q  218 gaaagaatcacaac 231  Q
    ||||||||||||||    
T  36718583 gaaagaatcacaac 36718570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 13656057 - 13656276
Alignment:
Q  20 gcctcaaacaaaaaattaagtctaatacccacccccagttaaacaaaaaatacat--gttatatccttttctttcttcggtagacgtttgaannnnnnnn 117  Q
    ||||| ||| ||||||||| ||||||| ||||| ||| ||||| |||||||| ||  |||||||| |||||||||||  ||| ||||||||             
T  13656057 gcctctaacgaaaaattaaatctaataaccacctccacttaaataaaaaatatatatgttatatcattttctttctttagtacacgtttga--gtttttt 13656154  T
Q  118 ctagactctagttctcttttttgtacataaatctaatcct---atcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttc 214  Q
    |||||||||||||||| ||||||||||||||||  |||||   |  |||||| |||||||||||||||||| |||||||||||||||| ||   ||||||    
T  13656155 ctagactctagttctcctttttgtacataaatcggatcctaaaaaaaaaccatccctaatttgtataatcacttaatcagtcaatttgaaaagttatttc 13656254  T
Q  215 attgaaagaatcacaacaatca 236  Q
    ||||||||||||||||||||||    
T  13656255 attgaaagaatcacaacaatca 13656276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 134 - 234
Target Start/End: Original strand, 12661273 - 12661373
Alignment:
Q  134 ttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaa 233  Q
    ||||||||| |||||||  || ||||||||||||| |||||||||||||||| |||| ||||||||||||||  ||||||||||||||||||||||||||    
T  12661273 ttttttgtatataaatcggattctatcaaaccacctctaatttgtataatcacttaaccagtcaatttggaaagctatttcattgaaagaatcacaacaa 12661372  T
Q  234 t 234  Q
    |    
T  12661373 t 12661373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 20975933 - 20976051
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||||| | |  |||||||| |  | ||||||||||||| | ||||||||||||||||||||||||||||||| ||  ||||||||||    
T  20975933 ctagactttagttctcttatcttgacataaatttggtactatcaaaccaccaccaatttgtataatcatttaatcagtcaatttgaaaagctatttcatt 20976032  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  20976033 gaaagaatcacaacaatca 20976051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 43511566 - 43511684
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||| | | || ||||||||||  | ||||||||||||||| |||||||||||||| |||||||||||||||| ||  |||||||||     
T  43511566 ctagactttagttctcctatctggacataaatctggtactatcaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagctatttcatg 43511665  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  43511666 gaaagaatcacaacaatca 43511684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 29156162 - 29156256
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||  | |||||||||||||||||||||||||||||| |||||||||||||||  ||   ||||||||||||||||||||||||||||    
T  29156162 acataaatctggtactatcaaaccacccctaatttgtataatcacttaatcagtcaatttaaaaagttatttcattgaaagaatcacaacaatca 29156256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 118 - 234
Target Start/End: Original strand, 138092 - 138208
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||  |||| | |||||||| | || |||||||||||||   |||||||||||||| |||||||||||||||| ||  ||||||||||    
T  138092 ctagactctagttctacttttcggacataaatttgatgctatcaaaccaccatcaatttgtataatcacttaatcagtcaatttgaaaagctatttcatt 138191  T
Q  218 gaaagaatcacaacaat 234  Q
    |||| ||||||||||||    
T  138192 gaaataatcacaacaat 138208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 42291959 - 42291879
Alignment:
Q  156 ctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    |||||||| |||| | |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||    
T  42291959 ctatcaaatcaccaccaatttgtataatcacttaatcagtcaatttgaaaatctatttcattgaaagaatcacaacaatca 42291879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 4734698 - 4734580
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||| | | || ||||||||||  | ||||||||||||| | |||||||||||||  || |||| |||||||| || |||||||||||    
T  4734698 ctagactttagttctcctatctggacataaatctggtactatcaaaccaccaccaatttgtataatcccttgatcactcaatttgaaaatctatttcatt 4734599  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  4734598 gaaagaatcacaacaatca 4734580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 10591389 - 10591271
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||| | | || |||||||| |  | ||||||||||||||| |||||||||||||| ||||||||| |||||| ||   |||||||||    
T  10591389 ctagactttagttctcctatctgaacataaatatggtactatcaaaccacccccaatttgtataatcacttaatcagttaatttgaaaagttatttcatt 10591290  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  10591289 gaaagaatcacaacaatca 10591271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 118 - 225
Target Start/End: Original strand, 27351297 - 27351404
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||| || |||||||| |  | ||||||||||||| | ||||||||||| || |||||||||||||||||||   |||||||||    
T  27351297 ctagactctagttctcctttctgaacataaatttggtgctatcaaaccacctccaatttgtataaccacttaatcagtcaatttggaaagttatttcatt 27351396  T
Q  218 gaaagaat 225  Q
    ||||||||    
T  27351397 gaaagaat 27351404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 17514052 - 17513934
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||| |||||||| | | || | ||||||||  | ||| ||||||||||| |||||||||||||| |||||||||||||||| ||   ||||||| |    
T  17514052 ctagactttagttctcctatctggatataaatctggtactaacaaaccacccccaatttgtataatcacttaatcagtcaatttgaaaagttatttcact 17513953  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  17513952 gaaagaatcacaacaatca 17513934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 30 - 178
Target Start/End: Original strand, 8398837 - 8398989
Alignment:
Q  30 aaaaattaagtctaatacccaccccc-agttaaacaaaaaatacat----gttatatccttttctttcttcggtagacgtttgaannnnnnnnctagact 124  Q
    ||||||||| |||||||| ||||||| | ||||| |||||||| ||    ||||||||||||||||||||  ||| ||||||||          ||||||    
T  8398837 aaaaattaaatctaatactcaccccccacttaaataaaaaatatatatatgttatatccttttctttctttagtacacgtttgagtttttttt-tagact 8398935  T
Q  125 ctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgt 178  Q
    ||||||||| ||||||||||||||||  ||||||||||||||||||||||||||    
T  8398936 ctagttctcatttttgtacataaatcggatcctatcaaaccacccctaatttgt 8398989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 26311954 - 26312029
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatca 193  Q
    ||||| |||||||||  ||||||||||||||||  ||||||||||||||||| ||||||||||||||| |||||||    
T  26311954 ctagattctagttcttctttttgtacataaatcggatcctatcaaaccacccataatttgtataatcacttaatca 26312029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 40956261 - 40956379
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||| || |||||||||| || | |||||||   | | |||||||||||||| ||||||| | |||||| ||  ||||||||||    
T  40956261 ctagactctagttctcctttgtggacataaatctgatgcaatcaaacattctccaatttgtataatcacttaatcatttaatttgaaaaactatttcatt 40956360  T
Q  218 gaaagaatcacaacaatca 236  Q
     ||||||||||||||||||    
T  40956361 aaaagaatcacaacaatca 40956379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 5829357 - 5829449
Alignment:
Q  142 acataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||  | ||||||||||| ||  |||||||||||||| |||||||||||||||  ||  |||||||||| ||||||||||||||||||    
T  5829357 acataaatctggtactatcaaaccaacctcaatttgtataatcacttaatcagtcaattt--aaagctatttcattaaaagaatcacaacaatca 5829449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 171 - 234
Target Start/End: Original strand, 18873458 - 18873521
Alignment:
Q  171 taatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||||||||| || |||||||| ||||||| ||  |||||||||||||||||||||||||||    
T  18873458 taatttgtataaccacttaatcagccaatttgaaaagctatttcattgaaagaatcacaacaat 18873521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 40779140 - 40779257
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||| |||||||||| ||| || |||||||| | ||  |||||||| | ||| ||||||||||||| |||||| |||||||||| ||  ||||| ||||    
T  40779140 ctagagtctagttctcctttctgaacataaatttgatgttatcaaactatccccaatttgtataatcgtttaataagtcaatttgaaaaactattccatt 40779239  T
Q  218 gaaagaatcacaacaatca 236  Q
    | | |||||||||||||||    
T  40779240 g-aggaatcacaacaatca 40779257  T

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Target: chr5; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 227
Target Start/End: Original strand, 23069172 - 23069277
Alignment:
Q  122 actctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaa 221  Q
    |||||| ||||| ||| || |||||||| | || ||| ||||||||||| |||||||||||||  ||||||| || ||||||||  ||||||||||  ||    
T  23069172 actctaattctcctttctgaacataaatatgatgctagcaaaccacccccaatttgtataatcccttaatcattcgatttggaaagctatttcattacaa 23069271  T
Q  222 gaatca 227  Q
    ||||||    
T  23069272 gaatca 23069277  T

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Target: chr5; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 118 - 201
Target Start/End: Original strand, 931328 - 931411
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaattt 201  Q
    ||||||| |||||||||||| | || |||||| | || |||| ||| ||| || |||||||||||||| |||||||||||||||    
T  931328 ctagactatagttctcttttctatatataaatttgatgctattaaatcacacccaatttgtataatcacttaatcagtcaattt 931411  T

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Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 3349805 - 3349727
Alignment:
Q  158 atcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaatca 236  Q
    ||||||||||  | |||| | ||||| | |||||||||||||||| ||  ||||||||| |||||||||||||||||||    
T  3349805 atcaaaccactaccaattggaataatgacttaatcagtcaatttgaaaagctatttcatagaaagaatcacaacaatca 3349727  T

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Target: chr5; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 17325847 - 17325909
Alignment:
Q  173 atttgtataatcatttaatcagtcaatttggaagt-ctatttcattgaaagaatcacaacaat 234  Q
    ||||| ||||||| |||||||||||||||| ||   |||||||||||||||||||||||||||    
T  17325847 atttgaataatcacttaatcagtcaatttgaaaaaactatttcattgaaagaatcacaacaat 17325909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 10033494 - 10033607
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaat-cagtcaatttggaagtctatttcat 216  Q
    |||||||||||||||  ||| ||||||||||| | || |||||||||| ||   |||||||||||||| | | |  |||||||||| ||  |||||| ||    
T  10033494 ctagactctagttctactttctgtacataaatttgatgctatcaaacccccatcaatttgtataatcactgattaaagtcaatttgaaaagctattttat 10033593  T
Q  217 tgaaagaatcacaa 230  Q
    ||||||||||||||    
T  10033594 tgaaagaatcacaa 10033607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 15 - 94
Target Start/End: Original strand, 40778690 - 40778773
Alignment:
Q  15 tatgagcctcaaacaaaaaattaagtctaatacccaccccc-agttaaacaa---aaaatacatgttatatccttttctttctt 94  Q
    |||||||||||||||||| |||||||||||||| ||||||| | ||||| ||   |||||| ||||||  ||||||||||||||    
T  40778690 tatgagcctcaaacaaaatattaagtctaatactcaccccctacttaaataaaataaaatatatgttacttccttttctttctt 40778773  T

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Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 71
Target Start/End: Complemental strand, 17514139 - 17514097
Alignment:
Q  29 aaaaaattaagtctaatacccacccccagttaaacaaaaaata 71  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||    
T  17514139 aaaaaattaaatctaatacccacccccacttaaataaaaaata 17514097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 174 - 234
Target Start/End: Complemental strand, 7390460 - 7390400
Alignment:
Q  174 tttgtataatcatttaatcagtcaatttggaagtctatttcattgaaagaatcacaacaat 234  Q
    |||||||||||| |||||||||||||||  ||   |||||||| ||||||||||| |||||    
T  7390460 tttgtataatcacttaatcagtcaatttaaaaagttatttcatcgaaagaatcacgacaat 7390400  T

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Target: scaffold0126 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 16658 - 16776
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||| ||  ||||||||||    
T  16658 ctagactctagttctcctttttgtacataaatcggatcctatcaaaccacccctaatttgtataatcacttaatcagtcaatttgaaaagctatttcatt 16757  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||| ||||    
T  16758 gaaagaatcacaacgatca 16776  T

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Target: scaffold0181 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 17248 - 17130
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| |||||||| |||||||  ||||||||||| ||||||||||||||||||||| |||||||||||||||||||  ||||||| ||    
T  17248 ctagactctagttctcatttttgtatataaatcggatcctatcaaatcacccctaatttgtataatcacttaatcagtcaatttggaaagctatttcgtt 17149  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  17148 gaaagaatcacaacaatca 17130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0606 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0606
Description:

Target: scaffold0606; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 118 - 230
Target Start/End: Complemental strand, 8511 - 8399
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    ||||||||||| | || ||| || ||||||| || || |||||||||||||| ||||||||||||||| ||||||||||||||| |||  ||||||||||    
T  8511 ctagactctagatttcctttctggacataaaccttatgctatcaaaccacccataatttgtataatcaattaatcagtcaatttcgaaaactatttcatt 8412  T
Q  218 gaaagaatcacaa 230  Q
    |||||||||||||    
T  8411 gaaagaatcacaa 8399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0564 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0564
Description:

Target: scaffold0564; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 118 - 236
Target Start/End: Original strand, 1021 - 1127
Alignment:
Q  118 ctagactctagttctcttttttgtacataaatctaatcctatcaaaccacccctaatttgtataatcatttaatcagtcaatttggaagtctatttcatt 217  Q
    |||||||||||||||| ||||||| ||||||||  ||||||||||||||||||||||||||||||            |||||||||||  ||||||||||    
T  1021 ctagactctagttctcctttttgtgcataaatcggatcctatcaaaccacccctaatttgtataa------------tcaatttggaaagctatttcatt 1108  T
Q  218 gaaagaatcacaacaatca 236  Q
    |||||||||||||||||||    
T  1109 gaaagaatcacaacaatca 1127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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