View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_high_24 (Length: 251)
Name: NF3049_high_24
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_high_24 |
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| [»] chr8 (1 HSPs) |
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| [»] scaffold0975 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 23049098 - 23049331
Alignment:
| Q |
18 |
atgtgttcaatcttagcttagcataagtgtggttcttcacaaataatgtagtacatttatgtttgcatttgtctttaactattgaagtggcctatctact |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23049098 |
atgtgttcaatcttagcttagcataagtgtggttcttcataaataatgtagtacatttatgtttgcatttgtctttaactattgaagtggcctatctact |
23049197 |
T |
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| Q |
118 |
cctccaatgatatatgacatatgtgaaattatgtatcctataatataacatattccgtacctaatatctctcaatttcaatgcattacattgtccaaaac |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23049198 |
cctccaatgatatatgacatatgtgaaattatgtatcctataatataacatattcagtacctaatatctctcaatttcaatgcattacattgtccaaaat |
23049297 |
T |
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| Q |
218 |
gatttagcattatgataaatgttactttattgtt |
251 |
Q |
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| T |
23049298 |
gatttagcattatgataaatgttactttattgtt |
23049331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0975 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0975
Description:
Target: scaffold0975; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 251
Target Start/End: Original strand, 2113 - 2346
Alignment:
| Q |
18 |
atgtgttcaatcttagcttagcataagtgtggttcttcacaaataatgtagtacatttatgtttgcatttgtctttaactattgaagtggcctatctact |
117 |
Q |
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||||||||||||| |||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2113 |
atgtgttcaatctaagcttagcataattgtggttcttcataaatgatgtagtacatttatgtttgcatttgtctttaactattaaagtggcctatctact |
2212 |
T |
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| Q |
118 |
cctccaatgatatatgacatatgtgaaattatgtatcctataatataacatattccgtacctaatatctctcaatttcaatgcattacattgtccaaaac |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
2213 |
tctccaatgatatatgacatatcgaaaattatgtatcctataatataacatattcagtacctaatatctctcaatttcaatgcgttacattgtccaaaac |
2312 |
T |
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| Q |
218 |
gatttagcattatgataaatgttactttattgtt |
251 |
Q |
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|||||| ||||||||||||||||||||||||||| |
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| T |
2313 |
gatttaccattatgataaatgttactttattgtt |
2346 |
T |
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