View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_high_26 (Length: 241)
Name: NF3049_high_26
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_high_26 |
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| [»] scaffold0320 (2 HSPs) |
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Alignment Details
Target: scaffold0320 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: scaffold0320
Description:
Target: scaffold0320; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 19905 - 20034
Alignment:
| Q |
1 |
ttgttgatgtgtgaattaaggtttatcactctagttttgtggacgatgaaggagttaacagagtttgtggatgccctcttctccctttaaaaagccacat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
19905 |
ttgttgatgtgtgaattaaggtttatcactctagttttgtggacgatgaaggagttaacagagcttgtggatgccctcttctacctttaaaaagccacat |
20004 |
T |
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| Q |
101 |
taagggtcttgcacctgtttcagatcaagg |
130 |
Q |
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|||||||| ||||||||||||||||||||| |
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| T |
20005 |
taagggtcatgcacctgtttcagatcaagg |
20034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0320; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 20083 - 20134
Alignment:
| Q |
179 |
agaatgtgatatatgttgttgttgtgtattatgaatggtagatagaactgat |
230 |
Q |
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| T |
20083 |
agaatgtgatatatgttgttgttgtgtattatgaatggtagatagaactgat |
20134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 50680768 - 50680897
Alignment:
| Q |
1 |
ttgttgatgtgtgaattaaggtttatcactctagttttgtggacgatgaaggagttaacagagtttgtggatgccctcttctccctttaaaaagccacat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||||||||||||| |
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| T |
50680768 |
ttgttgatgtgtgaattaaggtttatcactctagttttgtggacgatgaaggagttaactgagcttgtggatgccctcttcttcctttaaaaagccacat |
50680867 |
T |
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| Q |
101 |
taagggtcttgcacctgtttcagatcaagg |
130 |
Q |
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| T |
50680868 |
taagggtcttgcacctgtttcagatcaagg |
50680897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 179 - 230
Target Start/End: Original strand, 50680946 - 50680997
Alignment:
| Q |
179 |
agaatgtgatatatgttgttgttgtgtattatgaatggtagatagaactgat |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50680946 |
agaatgtgatatatgttgttgttgtgtattatgaatggtagatagaactgat |
50680997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 130
Target Start/End: Complemental strand, 47893962 - 47893833
Alignment:
| Q |
1 |
ttgttgatgtgtgaattaaggtttatcactctagttttgtggacgatgaaggagttaacagagtttgtggatgccctcttctccctttaaaaagccacat |
100 |
Q |
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||||| |||| |||||||||||||||||||||||||| || |||||||||||| ||||||||| |||||| ||||||||||| ||| ||||||| ||||| |
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| T |
47893962 |
ttgtttatgtatgaattaaggtttatcactctagtttcgtagacgatgaaggaattaacagagcttgtgggtgccctcttcttcctctaaaaagtcacat |
47893863 |
T |
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| Q |
101 |
taagggtcttgcacctgtttcagatcaagg |
130 |
Q |
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|||||||| || ||||||||||||||||| |
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| T |
47893862 |
taagggtccagctcctgtttcagatcaagg |
47893833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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