View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3049_high_3 (Length: 534)
Name: NF3049_high_3
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 477; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 15 - 515
Target Start/End: Original strand, 52723515 - 52724015
Alignment:
| Q |
15 |
cagagatgtgctacttcataataatgcgagcattggtaaggctgatcaacctagtaacttgactgctaaagatgtggatagcaccattcctccggagaat |
114 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |||||| |
|
|
| T |
52723515 |
cagagatgtgctacttcataataacgcgagcattggtaaggctgatcaacctagtaacttgactgctaaagatgaggatagcaccatgcctcctgagaat |
52723614 |
T |
|
| Q |
115 |
cctgtattgaaaacatccatagatcaaactagcagcagctgttccactcccctggtttctgcaatcctagggatggactctgtagcccgagtatcaatgc |
214 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52723615 |
cctgtattgaaaagatccatagatcaaactagcagcagctgttccactcccctggtttctgcaatcctagggatggactctgtagcccgagtatcaatgc |
52723714 |
T |
|
| Q |
215 |
tgctgaaacgaattcgtttgctagagcctgaaaacaccatcacaagaattgattgcatgtggctttttgctctgtgtgcagcagtagatgctccactaga |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52723715 |
tgctgaaacgaattcgtttgctagagcctgaaaacaccatcacaagaattgattgcatgtggctttttgctctgtgtgcagcagtagatgctccactaga |
52723814 |
T |
|
| Q |
315 |
tgcagacacttgcgctgcactccggagtctgctgcggaagtgtgctagcattcgtgctggtaaagctgaactggatgatgaggttgtaatgttgaatata |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52723815 |
tgcagacacttgcgctgcactccggagtctgctgcggaagtgtgctagcattcgtgctggtaaagctgaactggatgatgaggttgtaatgttgaatata |
52723914 |
T |
|
| Q |
415 |
ttggctacaatttcagggagatattttggacaatctgaaagttgaattcccagtttgcaacttaatgacaatttatgttttagaattgggatggagccaa |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52723915 |
ttggctacaatttcagggagatattttggacaatctgaaaattgaattcccagtttgcaacttaatgacaatttatgttttagaattgggatggagccaa |
52724014 |
T |
|
| Q |
515 |
g |
515 |
Q |
| |
|
| |
|
|
| T |
52724015 |
g |
52724015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University