View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_high_32 (Length: 224)
Name: NF3049_high_32
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_high_32 |
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Alignment Details
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 11128018 - 11128231
Alignment:
| Q |
1 |
catgactagaatgaaccaaagttggctgaactctgaagagtatttggggaaannnnnnncgactcatttcttttcattcttttctcaaagtaatgagaaa |
100 |
Q |
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| T |
11128018 |
catgactagaatgaaccaaagttggctgaactctgaagagtatttgggaaaaaaaatttcgactcatttcttttcattcttttctcaaagtaatgagaaa |
11128117 |
T |
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| Q |
101 |
aacatatattgtatatgttgaactatttcatcttgctagtcaatcattaggatccaattaaattcaccaaatatttcaaatctatagaaatattacaagg |
200 |
Q |
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| T |
11128118 |
aacatatattgtatatgttgaactatttcatcttgctagtcaatcattaggatccaattaaattcaccaaatatttcaaatctatagaaatattacaagg |
11128217 |
T |
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| Q |
201 |
atgttgtttctctg |
214 |
Q |
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|||||||||||||| |
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| T |
11128218 |
atgttgtttctctg |
11128231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 90 - 214
Target Start/End: Original strand, 11114059 - 11114184
Alignment:
| Q |
90 |
gtaatgagaaaaacatatattgtatatgttgaactatttcatcttgctagtcaatcattaggatccaattaaattcacc-aaatatttcaaatctataga |
188 |
Q |
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||||||||| | ||||||| |||||||| | || | ||||||||||| ||||||||||| ||||| ||| || ||||| ||||| |||||||||||||| |
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| T |
11114059 |
gtaatgagagatacatatactgtatatgctaaaatgtttcatcttgcaagtcaatcattgggatctaataaacatcacccaaatacttcaaatctataga |
11114158 |
T |
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| Q |
189 |
aatattacaaggatgttgtttctctg |
214 |
Q |
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| T |
11114159 |
aatattacaaggatgttgtttctctg |
11114184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 11143224 - 11143291
Alignment:
| Q |
108 |
attgtatatgttgaactatttcatcttgctagtcaatcattaggatccaattaaattcaccaaatatt |
175 |
Q |
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|||||||||| ||||||||||||||||| | ||| |||||| ||||| ||| ||| |||||||||||| |
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| T |
11143224 |
attgtatatgctgaactatttcatcttggtggtcgatcattgggatctaatgaaaatcaccaaatatt |
11143291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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