View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_1 (Length: 584)
Name: NF3049_low_1
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 77 - 570
Target Start/End: Original strand, 55336449 - 55336942
Alignment:
| Q |
77 |
gcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttct |
176 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55336449 |
gcaggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttct |
55336548 |
T |
|
| Q |
177 |
ccaatgaagattccacatcttcctccgtaataagattaccaagattgattttggtttggatttgagtccatagttgtttgaacaatcttgtagcactgcg |
276 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
55336549 |
ccaatgaagattccacatcttcctcagtaataagattaccaagattgattttggtttggatttgagtccatagttgtttgaacaatcttgtagcattgcg |
55336648 |
T |
|
| Q |
277 |
ctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacatacaagttgctgctgaaaacagaagagtggatgatagtttcagagccaac |
376 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55336649 |
ctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacataccagttgctgctgaaaacagaagagtggatgatagtttcagagccaac |
55336748 |
T |
|
| Q |
377 |
agttgtgcaccatcagcaccagttgcggctgcaataccagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaagtaggttgttccaat |
476 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55336749 |
agttgtgcaccatcagcaccagttgcggctgcaatacaagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaagtaggttgttccaat |
55336848 |
T |
|
| Q |
477 |
tttgacgctgttcgcagatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatagagttgcacggtgttggagttattgat |
570 |
Q |
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| T |
55336849 |
tttgacgctgttcgccgatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatagagttgcacggtgttggagttattgat |
55336942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 80 - 551
Target Start/End: Original strand, 55331017 - 55331485
Alignment:
| Q |
80 |
ggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctcca |
179 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||| |||||||||||| | ||||| | |||||||||||||||||||||||||||||| |||||||||| |
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| T |
55331017 |
ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca |
55331116 |
T |
|
| Q |
180 |
atgaagattccacatcttcctccgtaataagattaccaagattgattttggtttggatttgagtccatagttgtttgaacaatcttgtagcactgcgctg |
279 |
Q |
| |
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|| | | |||||||| || || |||| |||||| | | || ||| |||||| | | || |||||||| ||||||||||| | | || |
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| T |
55331117 |
tgaaacacttcacatcttgttctgttt---gatttccaagagcaactgtgttttcgatttggcttcgaagatgtttgaataatcttgtagcgtttctttg |
55331213 |
T |
|
| Q |
280 |
ttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaacatacaagttgctgctgaaaacagaagagtggatgatagtttcagagccaacagt |
379 |
Q |
| |
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||| || ||||| |||||||||||||| |||||||| ||||| | |||| || ||||| ||||| | ||| |||||||||||||| |||||||| ||| |
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| T |
55331214 |
ttcttccgcgagttgcgaaggctgaattttgttcataataagaagtatacttgtagctgcagaaaataaaagtgtggatgatagtttaagagccaaaagt |
55331313 |
T |
|
| Q |
380 |
tgtgcaccatcagcaccagttgcggctgcaataccagttaatgttgtagcagtgagtgtaatcatgttaatgttgtttagaagtaggttgttccaatttt |
479 |
Q |
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| | ||| ||||||| |||| || ||| ||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||||| | |
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| T |
55331314 |
ggggtgccaatagcaccacttgcagccacaacaccggttaatgttgtagcagtaagtgtgatcatgttgatgttgtttagaagtaggttgttccaattct |
55331413 |
T |
|
| Q |
480 |
gacgctgttcgcagatgtttttgtgcatttcaattctgtcagatacagaatctaagatagcatagagttgca |
551 |
Q |
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| T |
55331414 |
gtcgctgttggctgaggttgttgtgcatttcgattctgtcggatacagaatctaaaattgcatagagttgca |
55331485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 179
Target Start/End: Complemental strand, 8395492 - 8395392
Alignment:
| Q |
79 |
aggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctcc |
178 |
Q |
| |
|
|||||||||| || ||| ||| |||||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||| ||||| ||||| ||| |
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| T |
8395492 |
aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc |
8395393 |
T |
|
| Q |
179 |
a |
179 |
Q |
| |
|
| |
|
|
| T |
8395392 |
a |
8395392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 79 - 179
Target Start/End: Original strand, 8406080 - 8406180
Alignment:
| Q |
79 |
aggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaacactttctcc |
178 |
Q |
| |
|
|||||||||| || ||| ||| |||||||||| | ||||||||||| |||||||| | ||||||||||| ||||||||||| ||||| ||||| ||| |
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|
| T |
8406080 |
aggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaactttttcc |
8406179 |
T |
|
| Q |
179 |
a |
179 |
Q |
| |
|
| |
|
|
| T |
8406180 |
a |
8406180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 8368481 - 8368541
Alignment:
| Q |
94 |
aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct |
154 |
Q |
| |
|
||||||||||||| ||| || ||||||| |||| ||||||||| ||| |||||||||||| |
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|
| T |
8368481 |
aggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct |
8368541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 8400929 - 8400869
Alignment:
| Q |
94 |
aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct |
154 |
Q |
| |
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||||||||||||| ||| || ||||||| |||| ||||||||| ||| |||||||||||| |
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| T |
8400929 |
aggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct |
8400869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 248 - 324
Target Start/End: Original strand, 8406246 - 8406322
Alignment:
| Q |
248 |
agttgtttgaacaatcttgtagcactgcgctgttcctcagcgagctgcgaaggctgaatcttgttcatgataagcaa |
324 |
Q |
| |
|
|||||||||||||||||||||||| | | |||||||| | ||| || || || || || ||||||||||||||||| |
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|
| T |
8406246 |
agttgtttgaacaatcttgtagcatttctttgttcctctgtgagttgagagggttggattttgttcatgataagcaa |
8406322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 94 - 154
Target Start/End: Complemental strand, 8422506 - 8422446
Alignment:
| Q |
94 |
aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct |
154 |
Q |
| |
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||||||||||||| ||| || ||||||| |||| ||||||||| ||| |||||||||||| |
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|
| T |
8422506 |
aggttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagct |
8422446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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