View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3049_low_10 (Length: 443)
Name: NF3049_low_10
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 21 - 425
Target Start/End: Original strand, 45283136 - 45283540
Alignment:
| Q |
21 |
ggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283136 |
ggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatca |
45283235 |
T |
|
| Q |
121 |
tttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |
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|
| T |
45283236 |
tttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaattcctcatatcagcgatttggtcatgaacagcttgaatgt |
45283335 |
T |
|
| Q |
221 |
tgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttcctt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283336 |
tgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttcctt |
45283435 |
T |
|
| Q |
321 |
tccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttcgggtcagcg |
420 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45283436 |
tccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttcgggtcagcg |
45283535 |
T |
|
| Q |
421 |
gcatc |
425 |
Q |
| |
|
||||| |
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|
| T |
45283536 |
gcatc |
45283540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 422
Target Start/End: Original strand, 45294524 - 45294925
Alignment:
| Q |
21 |
ggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| |
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|
| T |
45294524 |
ggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcaccgtca |
45294623 |
T |
|
| Q |
121 |
tttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgt |
220 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
45294624 |
ttttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatgaacagcttgaatgt |
45294723 |
T |
|
| Q |
221 |
tgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttcctt |
320 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
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|
| T |
45294724 |
tgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggtaccatcttcctt |
45294823 |
T |
|
| Q |
321 |
tccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttcgggtcagcg |
420 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| ||||||||| |
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|
| T |
45294824 |
tccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgctatgtatgccttagggtcagcg |
45294923 |
T |
|
| Q |
421 |
gc |
422 |
Q |
| |
|
|| |
|
|
| T |
45294924 |
gc |
45294925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 21 - 422
Target Start/End: Original strand, 45303484 - 45303885
Alignment:
| Q |
21 |
ggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||| |
|
|
| T |
45303484 |
ggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacgtctaattgctccttgatcttcttctcaccgtca |
45303583 |
T |
|
| Q |
121 |
tttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgt |
220 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303584 |
ttttcatcgtcaaatccttccatacaagcttgtctgtaagagataactgcactcaaccaattcctcatatcagcggtttggtcatgaacagcttgaatgt |
45303683 |
T |
|
| Q |
221 |
tgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttcctt |
320 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
45303684 |
tgctgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggtaccatcttcctt |
45303783 |
T |
|
| Q |
321 |
tccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttcgggtcagcg |
420 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| || | |||||||||||||||||| ||||||||| |
|
|
| T |
45303784 |
tccatactcagtggtgagcctgtcactcatgttaaaggccttaatgacattgtcagtggctgcctttacagcggctgctatgtatgccttagggtcagcg |
45303883 |
T |
|
| Q |
421 |
gc |
422 |
Q |
| |
|
|| |
|
|
| T |
45303884 |
gc |
45303885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 22 - 425
Target Start/End: Original strand, 45271363 - 45271766
Alignment:
| Q |
22 |
gacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatcat |
121 |
Q |
| |
|
||||||||||||||||||||||||||||| || || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45271363 |
gacaaaccagtcacaatgtcaagggcaacggctgtgaccttttgtacgctgtacaaactctgaacatggaattgctccttgatcttcttctcaccatcat |
45271462 |
T |
|
| Q |
122 |
ttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgtt |
221 |
Q |
| |
|
|||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||| ||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
45271463 |
ttgcatcgtcaaatccttccatacaaccttgtttgtaagagataactgcactcaaccaattcctcatatcagcagtttggtcatgaacagcttcaatgtt |
45271562 |
T |
|
| Q |
222 |
gttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttccttt |
321 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
45271563 |
gttgtcacgaacacagttgttggagaggtcaagactgtccaaagcgaattgcatcaagtctttgcagtcatcaagagccatcttggcaccatttttcttt |
45271662 |
T |
|
| Q |
322 |
ccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttcgggtcagcgg |
421 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
45271663 |
ccatactcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcagtggctgccttcacggctgctgctatgtatgccttagggtcagcgg |
45271762 |
T |
|
| Q |
422 |
catc |
425 |
Q |
| |
|
|||| |
|
|
| T |
45271763 |
catc |
45271766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 21 - 425
Target Start/End: Original strand, 45274895 - 45275299
Alignment:
| Q |
21 |
ggacaaaccagtcacaatgtcaagggcaacagcggtaaccttttgtacgctgtccaaactctgaacatggaattgctccttgatcttcttctcaccatca |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
45274895 |
ggacaaaccagtcacaatgtcaagggcaaccgcggtgatcttttgtacgctgtccaaactctgaacatggaattgctctttgattttcttctcaccatca |
45274994 |
T |
|
| Q |
121 |
tttgcatcgtcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgt |
220 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| || || || |||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
45274995 |
tttgcatcgtcaaatccttccatacaggcttgtctgtaggatatgactgcactcaaccaattcctcatatcagcagtttggtcatgaacagcttgaatgt |
45275094 |
T |
|
| Q |
221 |
tgttgtcatgaacacacttggtggagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcattaagagccatcttggcaccattttcctt |
320 |
Q |
| |
|
|||||||| || ||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45275095 |
tgttgtcactaagacaattgtttgagaggtcaagactgtccaaagcgaattgcatcaagtccttgcagtcatcaagagccatcttggcaccattttcctt |
45275194 |
T |
|
| Q |
321 |
tccatgctcagtggtgagcctttcactcatgttaaaggccttaatgacattgtcggtggctgccttcacggaggctgctatgtatgccttcgggtcagcg |
420 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||| |||||||||||||||||| ||||||||| |
|
|
| T |
45275195 |
tccatactcagtggtgagcctttcactcatgttaaaggcgttcatgacattgtcagtggctgccttcacggcggctgctatgtatgccttagggtcagcg |
45275294 |
T |
|
| Q |
421 |
gcatc |
425 |
Q |
| |
|
||||| |
|
|
| T |
45275295 |
gcatc |
45275299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 224
Target Start/End: Original strand, 38588624 - 38588718
Alignment:
| Q |
130 |
tcaaatccttccatacaagcttgtctgtaagagataaccgcactcaaccaatttctcatatcagcggtttggtcatgaacagcttgaatgttgtt |
224 |
Q |
| |
|
|||||||| ||||| || | |||| ||| |||||||| |||||||||||||| || | ||||| ||||| ||||||| |||||||||||||| |
|
|
| T |
38588624 |
tcaaatccgtccatgcatgattgttggtatgagataacagcactcaaccaattcctaaaatcaggtgtttgatcatgaatggcttgaatgttgtt |
38588718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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