View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3049_low_11 (Length: 409)

Name: NF3049_low_11
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3049_low_11
NF3049_low_11
[»] chr1 (4 HSPs)
chr1 (17-402)||(48064852-48065235)
chr1 (206-249)||(50692137-50692180)
chr1 (318-377)||(52561668-52561727)
chr1 (313-377)||(27520281-27520345)
[»] chr7 (3 HSPs)
chr7 (313-380)||(9210778-9210845)
chr7 (313-377)||(36136908-36136972)
chr7 (313-377)||(36239870-36239934)
[»] chr5 (2 HSPs)
chr5 (313-377)||(15168915-15168979)
chr5 (314-377)||(28026-28089)
[»] chr4 (3 HSPs)
chr4 (313-377)||(51421874-51421938)
chr4 (318-377)||(55809069-55809128)
chr4 (313-377)||(55237980-55238044)
[»] chr2 (2 HSPs)
chr2 (318-402)||(4682256-4682340)
chr2 (206-243)||(27503752-27503789)
[»] chr3 (4 HSPs)
chr3 (314-369)||(15296059-15296114)
chr3 (318-377)||(19676160-19676219)
chr3 (318-376)||(49042081-49042139)
chr3 (313-378)||(45289165-45289230)
[»] chr8 (1 HSPs)
chr8 (313-377)||(29520793-29520857)


Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-109; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 402
Target Start/End: Original strand, 48064852 - 48065235
Alignment:
Q  17 gtttagtgcttgactttctctccnnnnnnnnnngagtgatagtgcttgagttatttatttgtt-gtgggtttgtgttttgaattactataacaatgatca 115  Q
    |||||||||||||||||||||||          ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||    
T  48064852 gtttagtgcttgactttctctccttttttttttgagtgatagtgcttgagttatttatttttttgtgggtttgtgttttgaattactataacaatgatca 48064951  T
Q  116 aatattattccattaaatgagtttggttagttggatcgaattatgtcatatttcatcccaaataaattatttgttgggttctttgactatctaatgtatg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||       ||||| ||||||||||||| ||||    
T  48064952 aatattattccattaaatgagtttggttagttggatcgaattatgtcatatttcatccca---aaatta-------ggttcattgactatctaatatatg 48065041  T
Q  216 tagtatatattatagatcaaatacattacgtatttaataaacttacaag-------nnnnnnnnnnnnnnnataattgtgaccgaaaggagtgatgtttt 308  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||| |||| |||| |||||||    
T  48065042 tactatatattatagatcaaatacattacgtatttaataaacttacaagtttttttatttttttattttttataattgtgactgaaaagagtaatgtttt 48065141  T
Q  309 atattaaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagttttccttgatcatgatctatctcctttg 402  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |||||||||||||||| ||||    
T  48065142 atattaaatcatatttggatccaattcatcaacctcgaaatttttcctaacaatttctcctatagttttcctagatcatgatctatctcttttg 48065235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 206 - 249
Target Start/End: Original strand, 50692137 - 50692180
Alignment:
Q  206 ctaatgtatgtagtatatattatagatcaaatacattacgtatt 249  Q
    ||||||||| | ||||||||||||||||||||||||||||||||    
T  50692137 ctaatgtatttggtatatattatagatcaaatacattacgtatt 50692180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 377
Target Start/End: Original strand, 52561668 - 52561727
Alignment:
Q  318 catatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 377  Q
    ||||||||||||||| |||| |||||| |||| ||||| |||| ||||||||||||||||    
T  52561668 catatttggatccaactcattaacctctaaatctttcctaacagtttctcttatagtttt 52561727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 27520281 - 27520345
Alignment:
Q  313 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 377  Q
    |||||||||||||||||||  |||| || ||| |||||||| | || | ||||||||||||||||    
T  27520281 taaatcatatttggatccagctcattaatctctaaattttttctaatagtttctcttatagtttt 27520345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 380
Target Start/End: Original strand, 9210778 - 9210845
Alignment:
Q  313 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagttttcct 380  Q
    |||| ||||||||||||||| |||| |||||| |||||||||| || | |||||||||||||||||||    
T  9210778 taaaccatatttggatccaactcattaacctctaaatttttcctaaaagtttctcttatagttttcct 9210845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 36136972 - 36136908
Alignment:
Q  313 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 377  Q
    |||| |||||||||||||||||||| ||| || |||| |||||||| | ||||||||||||||||    
T  36136972 taaaccatatttggatccaattcattaacatctaaatctttccaaatagtttctcttatagtttt 36136908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 36239870 - 36239934
Alignment:
Q  313 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 377  Q
    |||| ||||||||||||||| || | || ||| |||||||||| || | ||||||||||||||||    
T  36239870 taaagcatatttggatccaactcgttaatctctaaatttttcctaatagtttctcttatagtttt 36239934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 15168979 - 15168915
Alignment:
Q  313 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 377  Q
    |||| ||||| ||||||||| | || |||||| |||||||||| |||| ||||||||||||||||    
T  15168979 taaaccatatctggatccaacttattaacctctaaatttttcctaacagtttctcttatagtttt 15168915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 377
Target Start/End: Complemental strand, 28089 - 28026
Alignment:
Q  314 aaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 377  Q
    ||||||||||||||||||| | || |||||| |||| ||||| || | ||||||||||||||||    
T  28089 aaatcatatttggatccaacttattaacctctaaatctttcctaatagtttctcttatagtttt 28026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 51421938 - 51421874
Alignment:
Q  313 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 377  Q
    |||| ||| |||||||||||||||| |||||| |||| ||||| || | ||||||||||||||||    
T  51421938 taaaccatttttggatccaattcattaacctctaaatctttcctaatagtttctcttatagtttt 51421874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 377
Target Start/End: Original strand, 55809069 - 55809128
Alignment:
Q  318 catatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 377  Q
    ||||| ||||||||| |||| |||||| |||| ||||| |||| ||||||||||||||||    
T  55809069 catatctggatccaactcattaacctctaaatctttcctaacagtttctcttatagtttt 55809128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 377
Target Start/End: Original strand, 55237980 - 55238044
Alignment:
Q  313 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 377  Q
    |||||||||||||||| ||| |||| ||| ||||||| | ||| || ||||||||||||| ||||    
T  55237980 taaatcatatttggattcaactcattaacatcgaaatatatcctaataatttctcttataatttt 55238044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 402
Target Start/End: Original strand, 4682256 - 4682340
Alignment:
Q  318 catatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagttttccttgatcatgatctatctcctttg 402  Q
    ||||||||||||||| |||| |||||| |||| ||||   | |||||||||||||||||| || |||| ||||||| ||| ||||    
T  4682256 catatttggatccaactcattaacctctaaatctttcatgaaaatttctcttatagtttttctagatcttgatctacctcttttg 4682340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 206 - 243
Target Start/End: Complemental strand, 27503789 - 27503752
Alignment:
Q  206 ctaatgtatgtagtatatattatagatcaaatacatta 243  Q
    |||||||||||||||||||||||| |||||||| ||||    
T  27503789 ctaatgtatgtagtatatattatatatcaaatatatta 27503752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000009; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 314 - 369
Target Start/End: Complemental strand, 15296114 - 15296059
Alignment:
Q  314 aaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctctt 369  Q
    |||||||||||||||||||||||| |||||| |||| ||||| || | ||||||||    
T  15296114 aaatcatatttggatccaattcattaacctctaaatctttcctaatagtttctctt 15296059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 377
Target Start/End: Original strand, 19676160 - 19676219
Alignment:
Q  318 catatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 377  Q
    ||||||||||||||| |||| |||||| |||||||||| || | ||||||||| ||||||    
T  19676160 catatttggatccaactcattaacctctaaatttttcctaatagtttctcttacagtttt 19676219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 376
Target Start/End: Complemental strand, 49042139 - 49042081
Alignment:
Q  318 catatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagttt 376  Q
    ||||||||||||||| |||| |||||| |||| ||||| || | |||||||||||||||    
T  49042139 catatttggatccaactcattaacctctaaatctttcctaatagtttctcttatagttt 49042081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 378
Target Start/End: Original strand, 45289165 - 45289230
Alignment:
Q  313 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagttttc 378  Q
    |||| ||||||||||||||| |||| || ||| |||| ||||| || | |||||||||||||||||    
T  45289165 taaaccatatttggatccaactcattaatctctaaatctttcctaatagtttctcttatagttttc 45289230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 377
Target Start/End: Complemental strand, 29520857 - 29520793
Alignment:
Q  313 taaatcatatttggatccaattcatcaacctcgaaatttttccaaacaatttctcttatagtttt 377  Q
    |||| ||||||||||||||| |||| || ||| ||||  |||| |||| ||||||||||||||||    
T  29520857 taaaccatatttggatccaactcattaatctctaaatcgttcctaacagtttctcttatagtttt 29520793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University