View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3049_low_14 (Length: 353)

Name: NF3049_low_14
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3049_low_14
NF3049_low_14
[»] chr8 (2 HSPs)
chr8 (18-323)||(6196339-6196644)
chr8 (56-145)||(20523656-20523745)
[»] chr7 (2 HSPs)
chr7 (53-124)||(24118236-24118307)
chr7 (53-120)||(21510349-21510416)
[»] chr5 (3 HSPs)
chr5 (53-145)||(6329072-6329164)
chr5 (58-122)||(31897950-31898014)
chr5 (53-114)||(21256877-21256938)
[»] chr1 (4 HSPs)
chr1 (53-185)||(32900280-32900412)
chr1 (68-124)||(16424936-16424992)
chr1 (58-119)||(35811890-35811950)
chr1 (58-124)||(26828440-26828505)
[»] chr4 (3 HSPs)
chr4 (53-145)||(29866014-29866106)
chr4 (53-145)||(49583251-49583343)
chr4 (65-146)||(4848506-4848586)
[»] chr3 (1 HSPs)
chr3 (53-101)||(44652818-44652866)


Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 6196644 - 6196339
Alignment:
Q  18 tcttcgtaagttcataattgtcattcctttcataattgtttcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaaca 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6196644 tcttcgtaagttcataattgtcattcctttcataattgtttcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaaca 6196545  T
Q  118 aattcatcaataagttatgaaaagaatttaaattacgaaatagggtagaaacaatgggaaattaagtttttccgcggcgtgacgacattttgttggggct 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6196544 aattcatcaataagttatgaaaagaatttaaattacgaaatagggtagaaacaatgggaaattaagtttttccgcggcgtgacgacattttgttggggct 6196445  T
Q  218 gtttccatgatttttgttcactttggtaaaacaggaaaaaacggtaaggagcactgcagaaatcaaccgtttgttagaatcttgtttatgatgattagtt 317  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6196444 gtttccatgatttttgttcactttggtaaaacaggaaaaaaccgtaaggagcactgcagaaatcaaccgtttgttagaatcttgtttatgatgattagtt 6196345  T
Q  318 taatta 323  Q
    ||||||    
T  6196344 taatta 6196339  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 145
Target Start/End: Complemental strand, 20523745 - 20523656
Alignment:
Q  56 tttcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaacaaattcatcaataagttatgaaaagaatt 145  Q
    ||||||| |||||||||| ||||   |||||| ||||||||  |||  |||||||| ||||||||||||||| || ||||||||||||||    
T  20523745 tttcttccaaaaacattagaaccccaatttataagtggttagcttgagttttagaataaacaaattcatcaaaaaattatgaaaagaatt 20523656  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 53 - 124
Target Start/End: Original strand, 24118236 - 24118307
Alignment:
Q  53 ttgtttcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaacaaattcat 124  Q
    |||| ||||||||||||||||||||||  |||||| ||||||||||||||| ||||||||||||||| ||||    
T  24118236 ttgtctcttctaaaaacattaaaacctgaatttatcagtggttaatttggtgtttagaagaaacaaagtcat 24118307  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 53 - 120
Target Start/End: Complemental strand, 21510416 - 21510349
Alignment:
Q  53 ttgtttcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaacaaat 120  Q
    |||| |||| |||||| | ||||||||   ||||||||||||||||||||||||||||||||||||||    
T  21510416 ttgtctcttttaaaaatagtaaaacctgagtttattagtggttaatttggtttttagaagaaacaaat 21510349  T

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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 6329072 - 6329164
Alignment:
Q  53 ttgtttcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaacaaattcatcaataagttatgaaaagaatt 145  Q
    |||| ||||||||||| |||||||  |  |||||||||||| |||||||||||||||| ||||||||||||  || || ||||||||||||||    
T  6329072 ttgtctcttctaaaaagattaaaatttgaatttattagtggctaatttggtttttagatgaaacaaattcactaaaaaattatgaaaagaatt 6329164  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 31897950 - 31898014
Alignment:
Q  58 tcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaacaaattc 122  Q
    ||||||||||||||||||| || ||||||||| |||||||| ||  |||||||||||||||||||    
T  31897950 tcttctaaaaacattaaaatctggatttattaatggttaatatgacttttagaagaaacaaattc 31898014  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 53 - 114
Target Start/End: Complemental strand, 21256938 - 21256877
Alignment:
Q  53 ttgtttcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaa 114  Q
    |||| ||||||||||||||| |||| |  | || ||||||||||||||||||||||||||||    
T  21256938 ttgtctcttctaaaaacattgaaacatgaactttttagtggttaatttggtttttagaagaa 21256877  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 185
Target Start/End: Original strand, 32900280 - 32900412
Alignment:
Q  53 ttgtttcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaacaaattcatcaataagttatgaaaagaatttaaatta 152  Q
    |||| |||||||||||||||||||||    |||||||||||||||||||| | ||||||||||| ||||||| || ||  |||| ||||||||  | |||    
T  32900280 ttgtctcttctaaaaacattaaaacccgagtttattagtggttaatttggctcttagaagaaacgaattcattaaaaaagtatgtaaagaattgtagtta 32900379  T
Q  153 cgaaatagggtagaaacaatgggaaattaagtt 185  Q
     |||||   | |||||||||| |||||||||||    
T  32900380 tgaaattatgaagaaacaatgagaaattaagtt 32900412  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 16424992 - 16424936
Alignment:
Q  68 acattaaaacctagatttattagtggttaatttggtttttagaagaaacaaattcat 124  Q
    |||||||| | || |||||||||||||||| |||||| |||||||||||||||||||    
T  16424992 acattaaagcataaatttattagtggttaaattggttcttagaagaaacaaattcat 16424936  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 119
Target Start/End: Original strand, 35811890 - 35811950
Alignment:
Q  58 tcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaacaaa 119  Q
    ||||||||||| ||||||||||| ||||||| |||||| ||||| ||| |||||||||||||    
T  35811890 tcttctaaaaa-attaaaacctaaatttattggtggttcatttgatttatagaagaaacaaa 35811950  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 58 - 124
Target Start/End: Original strand, 26828440 - 26828505
Alignment:
Q  58 tcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaacaaattcat 124  Q
    ||||||||||||||||||| ||  |||||| |||||||| |||| |||| ||||| |||||||||||    
T  26828440 tcttctaaaaacattaaaatctgaatttatcagtggttagtttgattttaagaag-aacaaattcat 26828505  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 53 - 145
Target Start/End: Original strand, 29866014 - 29866106
Alignment:
Q  53 ttgtttcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaacaaattcatcaataagttatgaaaagaatt 145  Q
    |||| |||||| |||||||||||||||  |||  |||||||||||||||||||||| | |||||||||||||    || ||||||||||||||    
T  29866014 ttgtctcttcttaaaacattaaaacctgaattagttagtggttaatttggtttttaaacgaaacaaattcattgcaaaattatgaaaagaatt 29866106  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 53 - 145
Target Start/End: Complemental strand, 49583343 - 49583251
Alignment:
Q  53 ttgtttcttctaaaaacattaaaacctagatttattagtggttaatttggtttttagaagaaacaaattcatcaataagttatgaaaagaatt 145  Q
    |||| |||||| |||||||| |||| |  |||||||||||| ||||||| ||| ||||||||| |||||||| | ||| ||||||||| ||||    
T  49583343 ttgtctcttcttaaaacattgaaacatgaatttattagtggctaatttgatttgtagaagaaataaattcattactaaattatgaaaataatt 49583251  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 4848506 - 4848586
Alignment:
Q  65 aaaacattaaaacctagatttattagtggttaatttggtttttagaagaaacaaattcatcaataagttatgaaaagaattt 146  Q
    ||||| |||||||||| |||||||||||||| ||||||||| || |||||| ||| |||| |  || |||||||||||||||    
T  4848506 aaaacgttaaaaccta-atttattagtggttgatttggtttatataagaaaaaaagtcattacaaaattatgaaaagaattt 4848586  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 101
Target Start/End: Complemental strand, 44652866 - 44652818
Alignment:
Q  53 ttgtttcttctaaaaacattaaaacctagatttattagtggttaatttg 101  Q
    |||| ||||||||||| ||||||||||| ||| ||||||||||||||||    
T  44652866 ttgtctcttctaaaaatattaaaacctaaattaattagtggttaatttg 44652818  T

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