View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_15 (Length: 347)
Name: NF3049_low_15
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_15 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 334
Target Start/End: Complemental strand, 44932702 - 44932388
Alignment:
| Q |
20 |
caacggcgtttggcaaaaggcagcgcatccactataaacttgttgagagaggctcttccgacggaacaatcatgagtacatcaccttgtctatggattac |
119 |
Q |
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| T |
44932702 |
caacggcgtttggcaaaaggcagcgcatccactataaacttgttgagagaggctcttccgacggaacaatcatgaatacatcaccctgtctatggattac |
44932603 |
T |
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| Q |
120 |
tcccatcacagttattgtcttgccttctctgatttaccccattcttcaagctgcattctccggtcattggtagaaggtccacgtttttcaagctagtgta |
219 |
Q |
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| T |
44932602 |
tcccatcacagttattgtcttaccttctctgatttaccccattcttcaagctgcattctccggtcattggtagaaggttcacatttttcaagctagtgta |
44932503 |
T |
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| Q |
220 |
gaaagttttgaggtaactctttgttatcatttgttgcatcaaatacggacgttggttccacactaaaaggagcaactttggcaccagacatagttttcat |
319 |
Q |
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| T |
44932502 |
gaaagttttgaggtaactctttgttatcatttgttgcatcaactacggtagttggttccaccataaaaggagcaactttggcaccagacctagttttcac |
44932403 |
T |
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| Q |
320 |
taattctattaacct |
334 |
Q |
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| T |
44932402 |
taattctcttaacct |
44932388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 33 - 333
Target Start/End: Original strand, 44931517 - 44931799
Alignment:
| Q |
33 |
caaaaggcagcgcatccactataaacttgttgagagaggctcttccgacggaacaatcatgagtacatcaccttgtctatggattactcccatcacagtt |
132 |
Q |
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| T |
44931517 |
caaaaggcagcgcacccactaaaaacctattgagacaggctcttccggcggaacaatcatgagcacatcaccacgtctacggattactcccatcacagtt |
44931616 |
T |
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| Q |
133 |
attgtcttgccttctctgatttaccccattcttcaagctgcattctccggtcattggtagaaggtccacgtttttcaagctagtgtagaaagttttgagg |
232 |
Q |
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| T |
44931617 |
atcgtgctaccttctttgatgta--tcattcttccagccgcatcctccggtcattattagaaag-------tttgcagtc---------aagttttgagg |
44931698 |
T |
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| Q |
233 |
taactctttgttatcatttgttgcatcaaatacggacgttggttccacactaaaaggagcaactttggcaccagacatagttttcattaattctattaac |
332 |
Q |
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| T |
44931699 |
taaatttttgtcatcatttattgcatcaactatggcagttggttccaccataaaaggagcaactttggcaccagacctagttttcactaattctcttaac |
44931798 |
T |
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