View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3049_low_16 (Length: 329)
Name: NF3049_low_16
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_16 |
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| [»] scaffold0902 (2 HSPs) |
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| [»] scaffold1652 (1 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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| [»] scaffold1176 (2 HSPs) |
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Alignment Details
Target: scaffold0902 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 3909 - 3597
Alignment:
| Q |
1 |
atttcttaataacaatatcactgcttcaaaactttatatagttagtcctaattttcccattctccatcataattctactctactatggcttcttccaaaa |
100 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| ||||||| |||| | |||||||||||||||||||||| |
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| T |
3909 |
atttcttaataacaatatcactgctacaaaactttatatagttaaccctaattttcctattctccttcatctt-----tctactatggcttcttccaaaa |
3815 |
T |
|
| Q |
101 |
ctgctgtgttgatgcttttggttacactgttgctgagttccgccgttgctagatcatcccccaagtcttctccgtttccatcacctgctatttctccctc |
200 |
Q |
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| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3814 |
ccgctgtgttgatgcttttggttgcactgttgctgagttccgccgttgctagatcatcccccaagtcttctccgtttccatcacctgctatttctccctc |
3715 |
T |
|
| Q |
201 |
cgctgactcaccagtggcgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgctttt |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
3714 |
cgctgactcaccagtggcgtctcctccggtacctctgaatagtgctccctcttcttcaccaactgcttcatctggttctcccgctgctgctcctgctgtc |
3615 |
T |
|
| Q |
301 |
gctccatcatcgatctct |
318 |
Q |
| |
|
||||||| ||||||||| |
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|
| T |
3614 |
actccatcgtcgatctct |
3597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 74 - 1
Alignment:
| Q |
14 |
aatatcactgcttcaaaactttatatagttagtcctaattttcccattctccatcataattctactctactatg |
87 |
Q |
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|
||||||| |||||||||||||||||| |||| |||||| ||||||||||||||||| |||||||||||||||| |
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|
| T |
74 |
aatatcattgcttcaaaactttatattgttaaccctaatattcccattctccatcatcattctactctactatg |
1 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1652 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold1652
Description:
Target: scaffold1652; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 116 - 326
Target Start/End: Original strand, 1 - 220
Alignment:
| Q |
116 |
ttttggttacactgttgctgagttccgccgttgctagatca---------tcccccaagtcttctccgtttccatcacctgctatttctccctccgctga |
206 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1 |
ttttggttgcactgtttctgagttccgccgttgctagatcaccaccatcatcacccaagtcttctccgtttccatcacctgctatttctccctccgctga |
100 |
T |
|
| Q |
207 |
ctcaccagtggcgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgcttttgctcca |
306 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
101 |
ctcaccagtggcgtctcctccggtaactgtgaatagtgctccctcttctttaacgactgcttcatctggttctcccgctgctgctcctgctgtctctcca |
200 |
T |
|
| Q |
307 |
tcatcgatctctgctcctcc |
326 |
Q |
| |
|
|| ||||||||| ||||||| |
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| T |
201 |
tcgtcgatctctactcctcc |
220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 79 - 286
Target Start/End: Original strand, 164997 - 165213
Alignment:
| Q |
79 |
tctactatggcttcttccaaaactgctgtgttgatgcttttggttacactgttgctgagttccgccgttgctagatca---------tcccccaagtctt |
169 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||||||| ||| ||||||| ||||||||||| |||||| ||||| |||||| |||||| |
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| T |
164997 |
tctactatggcttcttctcactcggctgtgttgatgcttttcgttgcactgtttctgagttccgctgttgctcgatcaccaccatcatccccccagtctt |
165096 |
T |
|
| Q |
170 |
ctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| |
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| T |
165097 |
ctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtctgcttt |
165196 |
T |
|
| Q |
270 |
atctggttctcccgctg |
286 |
Q |
| |
|
||||||||||| |||| |
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|
| T |
165197 |
ctctggttctcctgctg |
165213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 113; Significance: 3e-57; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 79 - 286
Target Start/End: Complemental strand, 14248729 - 14248513
Alignment:
| Q |
79 |
tctactatggcttcttccaaaactgctgtgttgatgcttttggttacactgttgctgagttccgccgttgctagatca---------tcccccaagtctt |
169 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||||||| ||| ||||||| ||||||||||| |||||| ||||| |||||| |||||| |
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| T |
14248729 |
tctactatggcttcttctcactcggctgtgttgatgcttttcgttgcactgtttctgagttccgctgttgctcgatcaccaccatcatccccccagtctt |
14248630 |
T |
|
| Q |
170 |
ctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttc |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| |||||| |
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| T |
14248629 |
ctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtcttctccggtacctctgaatagtgctccctctccttcaccgtctgcttt |
14248530 |
T |
|
| Q |
270 |
atctggttctcccgctg |
286 |
Q |
| |
|
||||||||||| |||| |
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| T |
14248529 |
ctctggttctcctgctg |
14248513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 47 - 185
Target Start/End: Complemental strand, 14317308 - 14317161
Alignment:
| Q |
47 |
cctaattttcccattctccatcataattctactctactatggcttcttccaaaactgctgtgttgatgcttttggttacactgttgctgagttccgccgt |
146 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||||||| || |
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| T |
14317308 |
cctaatattcccattctccatcataattctactctactatggcttcttccaaaacagctgtgttgatgcttttggttgcactgtttctgagttccgctgt |
14317209 |
T |
|
| Q |
147 |
tgctag---------atcatcccccaagtcttctccgtttccatcacc |
185 |
Q |
| |
|
|||| | |||||| |||||||||||||||||||||||||| |
|
|
| T |
14317208 |
tgctcgatcaccaccatcatcacccaagtcttctccgtttccatcacc |
14317161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 208 - 318
Target Start/End: Complemental strand, 14317165 - 14317055
Alignment:
| Q |
208 |
tcaccagtggcgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctcctgcttttgctccat |
307 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| | | ||||||| |
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|
| T |
14317165 |
tcaccagtggcgtctcctccggtacctctgaatagtgctccctctccttcaccgtctgcttcctctggttctcctgctgcagctcctgttgtcgctccat |
14317066 |
T |
|
| Q |
308 |
catcgatctct |
318 |
Q |
| |
|
||| ||||||| |
|
|
| T |
14317065 |
catggatctct |
14317055 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 193 - 327
Target Start/End: Complemental strand, 37257304 - 37257170
Alignment:
| Q |
193 |
tctccctccgctgactcaccagtggcgtctcctccggtacctgtgaatagtgctccctcttcttcaccgactgcttcatctggttctcccgctgctgctc |
292 |
Q |
| |
|
||||| ||||||| |||||| ||||| |||||||| ||||||||||| | ||||| ||| |||| || ||||||| |||| |||||||||| | ||| |
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|
| T |
37257304 |
tctccttccgctgtctcaccggtggcatctcctcccgtacctgtgaagaacgctccttctccttcccctcctgcttcctctgactctcccgctgtttctc |
37257205 |
T |
|
| Q |
293 |
ctgcttttgctccatcatcgatctctgctcctcct |
327 |
Q |
| |
|
||||| || |||||||||| |||||| || ||||| |
|
|
| T |
37257204 |
ctgctgttactccatcatccatctctactactcct |
37257170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 239
Target Start/End: Complemental strand, 37237871 - 37237814
Alignment:
| Q |
182 |
cacctgctatttctccctccgctgactcaccagtggcgtctcctccggtacctgtgaa |
239 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||||| |||||||| ||||||||||| |
|
|
| T |
37237871 |
cacctgcgatctctccctccgctgactcaccggtggcatctcctcccgtacctgtgaa |
37237814 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 227
Target Start/End: Complemental strand, 37245362 - 37245288
Alignment:
| Q |
153 |
atcatcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactcaccagtggcgtctcctcc |
227 |
Q |
| |
|
|||||| |||| || |||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
37245362 |
atcatcgcccatgttttctccgtttccatcaccaataatttctccctccgctaactcaccagtggcatctgctcc |
37245288 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 327
Target Start/End: Complemental strand, 37232851 - 37232787
Alignment:
| Q |
263 |
ctgcttcatctggttctcccgctgctgctcctgcttttgctccatcatcgatctctgctcctcct |
327 |
Q |
| |
|
||||||| |||||||| ||||| || ||||||||| || |||||||||||||||| |||||||| |
|
|
| T |
37232851 |
ctgcttcctctggttcacccgccgccgctcctgctgttactccatcatcgatctccactcctcct |
37232787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold1176
Description:
Target: scaffold1176; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 155 - 210
Target Start/End: Original strand, 1265 - 1320
Alignment:
| Q |
155 |
catcccccaagtcttctccgtttccatcacctgctatttctccctccgctgactca |
210 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| ||||||||||| ||| ||||| |
|
|
| T |
1265 |
catcccccaagtcttctccgtttccatctcctgcgatttctccctcagctaactca |
1320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1176; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 278 - 326
Target Start/End: Original strand, 112 - 160
Alignment:
| Q |
278 |
ctcccgctgctgctcctgcttttgctccatcatcgatctctgctcctcc |
326 |
Q |
| |
|
|||| ||||||||||||||| | ||||||||||||||||| ||||||| |
|
|
| T |
112 |
ctcctgctgctgctcctgctgtgactccatcatcgatctctactcctcc |
160 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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