View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_17 (Length: 329)
Name: NF3049_low_17
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 49623775 - 49623464
Alignment:
| Q |
1 |
tcaagtcgatccgccacttgtgcagcgttcttcttcattgtctcatggtaactttccaattatcatatttagtaaagagtagattgttcatggttaatta |
100 |
Q |
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| T |
49623775 |
tcaagtcgatccgccacttgtgcagcgttcttcttcattgtctcatggtaactttccaattatcatatttagtaaagagtagattgttcatggttaatta |
49623676 |
T |
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| Q |
101 |
aaggggaaattaaaaatatggtattgtgatggttgacctagaccaaatatata--tataattgagatgaactttttggcttttagtttgagttcatatgt |
198 |
Q |
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| T |
49623675 |
aaggggaaattaaaaatatggtattgtgatggttgacctagaccaaatatatatatataattgagatgaattttttggcttttagtttgagttcatatgt |
49623576 |
T |
|
| Q |
199 |
tattgtgttatcaggattgttttcttggcagcagaagcgtgcttgttggcagcatctgttatgaatgcaatccaaaattcgtatcttaatgagtattttt |
298 |
Q |
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| T |
49623575 |
tattgtgttatcaggattgttttcttggcagcagaagcatgcttgctggcagcatctgttatgaatgcaatccaaaatgcgtat-ttaatgagtattttt |
49623477 |
T |
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| Q |
299 |
tagggcatgattt |
311 |
Q |
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| T |
49623476 |
tagggcatgattt |
49623464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 122
Target Start/End: Complemental strand, 14335678 - 14335588
Alignment:
| Q |
28 |
ttcttcttcattgtctcatggtaactttccaattatcatatttagtaaagagtagattgttcatggttaattaaaggggaaattaaaaatatggt |
122 |
Q |
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| T |
14335678 |
ttcttctacgttctctcatggtaactttccaattatca-at---gtaaagagtagattgctcatagttaattaaggaggaaattaaaaatgtggt |
14335588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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