View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_18 (Length: 323)
Name: NF3049_low_18
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_18 |
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| [»] scaffold0975 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 23049403 - 23049713
Alignment:
| Q |
1 |
ctaatgtcaagcattaacaattaacaaattaattcagtaaacattccttcactatatcttttcaaaattcttcattaaaatttataataatatttataat |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23049403 |
ctaatgtcaagcactaacaattaacaaattaattcagtaaacattccttcactatatcttttcaaaattcttcattaaactttataataatatttataat |
23049502 |
T |
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| Q |
101 |
tactcaacatggcatacatacaacctacacgttggaatttcaaagttaaacaatacatgacatccaacatctatttcctttgaagcaagatatttatacc |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
23049503 |
tactcaacatggcatacatacaacctacgcgttggaatttcaaagttaaacaatacaagacatccaacatctatttcctttgaagcaagatatttatacc |
23049602 |
T |
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| Q |
201 |
atctttcaccaaagtacataagacttccatttcttctatctctcaaaatctcacattgatatgtcttatatgtttcttcatctataagagttaaactatt |
300 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
23049603 |
atccttcaccaaagtacataagacttccatttcttctatctctcaaaatctcatattgatatgtcttatctgtttcttcatct-taagagttaaactatt |
23049701 |
T |
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| Q |
301 |
ttgctcattcat |
312 |
Q |
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|| ||||||||| |
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| T |
23049702 |
ttactcattcat |
23049713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0975 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: scaffold0975
Description:
Target: scaffold0975; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 180 - 312
Target Start/End: Original strand, 2549 - 2681
Alignment:
| Q |
180 |
ttgaagcaagatatttataccatctttcaccaaagtacataagacttccatttcttctatctctcaaaatctcacattgatatgtcttatatgtttcttc |
279 |
Q |
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||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| |
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| T |
2549 |
ttgaagcaagatattaataccatccttcaccaaagtacataagacttccatttcttctatctctcaaaatctcacattcataagtctcatatgtttcttc |
2648 |
T |
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| Q |
280 |
atctataagagttaaactattttgctcattcat |
312 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
2649 |
atctataagagttaaactattttgctcattcat |
2681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0975; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 2418 - 2545
Alignment:
| Q |
1 |
ctaatgtcaagcattaacaattaacaaattaattcagtaaacattccttcactatatcttttcaaaattcttcattaaaatttataataatatttataat |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2418 |
ctaatgtcaagcactaacaattaacaaattaattcagtaaacattccttcactatatcttttcaaaattcttcattaaactttataataatatttataat |
2517 |
T |
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| Q |
101 |
tactcaacatggcatacatacaacctac |
128 |
Q |
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| ||| | | |||||||||||||||||| |
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| T |
2518 |
ttctctagagggcatacatacaacctac |
2545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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