View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_19 (Length: 312)
Name: NF3049_low_19
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 14 - 294
Target Start/End: Complemental strand, 2997455 - 2997176
Alignment:
| Q |
14 |
agactacctgttatattagtattttgttttgaaccctaatcctttggtgttgtgattaatgattatgattgaatggttttttaggtgttgaatgttatac |
113 |
Q |
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| T |
2997455 |
agactaactgttatattagtattttgttttgaaccctaatcctttggtgttgtgattaatgattataatt-aatggttttttaggtgttgaatgttatac |
2997357 |
T |
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| Q |
114 |
ttaggcttgcttggatgcaatctgttttaggcattaaggaagctcctttccttcatagaacagctttgactgctcttgtagcttgcttggagatcattcg |
213 |
Q |
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| T |
2997356 |
ttaggcttgcttggatgcaatctgttttaggcattaaggaagctcctttccttcatagaacagctttgactgctcttgtagcttgcttggagatcattcg |
2997257 |
T |
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| Q |
214 |
ccgcggcatttggaattttcttaggtattttttgaacatattcattaacttttttagaaattcgagtgatcgaactctgtg |
294 |
Q |
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| T |
2997256 |
ccgtggcatttggaattttcttaggtattttttgaacatattcattaacttttttagaaattcgagtgatcaaactctgtg |
2997176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 21 - 246
Target Start/End: Complemental strand, 3015625 - 3015400
Alignment:
| Q |
21 |
ctgttatattagtattttgttttgaaccctaatcctttggtgttgtgattaatgattatgattgaatggttttttaggtgttgaatgttatacttaggct |
120 |
Q |
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| T |
3015625 |
ctgttatattagtattttgttttgaaccctaatcctttggtgttgtgattaatgattatgattgaatggttttttaggtgttgaatgttatacttaggct |
3015526 |
T |
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| Q |
121 |
tgcttggatgcaatctgttttaggcattaaggaagctcctttccttcatagaacagctttgactgctcttgtagcttgcttggagatcattcgccgcggc |
220 |
Q |
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| T |
3015525 |
tgcttggatgcaatctgttttaggcattaaggaagctcctttccttcatagaacagctatgactgctcttgtagctagcttggagattattcgccgcggc |
3015426 |
T |
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| Q |
221 |
atttggaattttcttaggtatttttt |
246 |
Q |
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| T |
3015425 |
atttggaacttttttaggtatttttt |
3015400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 69 - 266
Target Start/End: Complemental strand, 3031094 - 3030896
Alignment:
| Q |
69 |
ttaatgattatgattgaatggttttttaggtgttgaatgttatacttaggcttgcttggatgcaatctgttttaggcattaaggaagctcctttccttca |
168 |
Q |
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| T |
3031094 |
ttaatgattatgaatgaattgttttttaggtgttgaatgttatacttaggcttgcatggatgcaatcggttttaggcattaaggaagctcctttccttca |
3030995 |
T |
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| Q |
169 |
tagaacagctttgactgctcttgtagcttgcttggagatcattcgccgcggcatttggaattttcttaggta-ttttttgaacatattcattaactttt |
266 |
Q |
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| T |
3030994 |
taaatcagctttgactgctgttgtagcttgcttggagatacttcgtcgcggcatttggaactttttcaggtactttgttgaacttattcaataaatttt |
3030896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 52 - 228
Target Start/End: Complemental strand, 11328154 - 11327978
Alignment:
| Q |
52 |
atcctttggtgttgtgattaatgattatgattgaatggttttttaggtgttgaatgttatacttaggcttgcttggatgcaatctgttttaggcattaag |
151 |
Q |
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||||||| ||| |||| ||| |||||| | |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
11328154 |
atccttttgtgctgtgtttactgattaataatgaaaggttttttaggtgttgaatgttatacttaggcttgcatggatgcaatcagttttaggcattaag |
11328055 |
T |
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| Q |
152 |
gaagctcctttccttcatagaacagctttgactgctcttgtagcttgcttggagatcattcgccgcggcatttggaa |
228 |
Q |
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| T |
11328054 |
gaagctccattccttcatacatcagctttgactgctgttgtagcttgcttggagatacttcgccgtggcatttggaa |
11327978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 52 - 228
Target Start/End: Original strand, 20063260 - 20063436
Alignment:
| Q |
52 |
atcctttggtgttgtgattaatgattatgattgaatggttttttaggtgttgaatgttatacttaggcttgcttggatgcaatctgttttaggcattaag |
151 |
Q |
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||||||| ||| |||| ||| |||||| | |||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
20063260 |
atccttttgtgctgtgtttactgattaataatgaaaggttttttaggtgttgaatgttatacttaggcttgcatggatgcaatcagttttaggcattaag |
20063359 |
T |
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| Q |
152 |
gaagctcctttccttcatagaacagctttgactgctcttgtagcttgcttggagatcattcgccgcggcatttggaa |
228 |
Q |
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| T |
20063360 |
gaagctccattccttcatacatcagctttgactgctgttgtagcttgcttggagatacttcgccgtggcatttggaa |
20063436 |
T |
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