View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_2 (Length: 537)
Name: NF3049_low_2
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_2 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 5 - 537
Target Start/End: Original strand, 44931925 - 44932463
Alignment:
| Q |
5 |
gaggagcagagacgactagtctgtttggcaaaataagtgatctacccactattttatgagaaagtgtgatgttttgaaaactgaaaaaacttctaattgt |
104 |
Q |
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| T |
44931925 |
gaggaccagacacgactagtctgtttggcaaaataagtgatctacccactattttatgagaaagtgtgatgttttgaaaactgaaaaaacttctaattgt |
44932024 |
T |
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| Q |
105 |
ttttgatgcaagtgagtgagtaagtgctgcttgatggggctgggattatcataatctctcttgttgtggttttgcttttttggaatcatgtttggagaaa |
204 |
Q |
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| T |
44932025 |
ttttgatgcaagtgagtgagtaagtgctgcttgatggggctgggattatcataatctctcttgttgtggttttgcttttttggaatcatgtttggagaaa |
44932124 |
T |
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| Q |
205 |
gnnnnnnnnn---ggttttttagggttagtcaaaaagataccatgatgttgaacttagagatatccttggcggtcaatttattaagattactggatatgt |
301 |
Q |
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| T |
44932125 |
gaaaaaaaaaaaaggttttttagggttagtcaaaaagataccatgatgttgaacttagagatatccttggcggtcaatttattaagattactggatatgt |
44932224 |
T |
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| Q |
302 |
aacttgtgacaatatttat---gagttatctaatcaaaaagtacctagttgtgtgtatatctcctcatagttatatgaatataaaggatggggtagaatc |
398 |
Q |
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| T |
44932225 |
aacttgtgacaatatttctctagagttatctaatcaaaaagtacctagttgtgtgtatatctcctcatagttatatgaatataaagaatggggtagaatc |
44932324 |
T |
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| Q |
399 |
atttggggttctacatgcactagagaatacgtagcagacttctacattacagatttcaagagcaggttaagagaattagtgaaaactaggtctggtgcca |
498 |
Q |
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| T |
44932325 |
atttggggttctacatacactagagaatacgtagcagacttatacattacagatttcaagagcaggttaagagaattagtgaaaactaggtctggtgcca |
44932424 |
T |
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| Q |
499 |
aagttgctcttttcatggtggacccaacaaccgtagttg |
537 |
Q |
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| T |
44932425 |
aagttgctccttttatggtggaaccaactaccgtagttg |
44932463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 445 - 526
Target Start/End: Complemental strand, 44931817 - 44931736
Alignment:
| Q |
445 |
ttacagatttcaagagcaggttaagagaattagtgaaaactaggtctggtgccaaagttgctcttttcatggtggacccaac |
526 |
Q |
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| T |
44931817 |
ttacaaatttcaagattgggttaagagaattagtgaaaactaggtctggtgccaaagttgctccttttatggtggaaccaac |
44931736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 340 - 392
Target Start/End: Complemental strand, 8968127 - 8968075
Alignment:
| Q |
340 |
tacctagttgtgtgtatatctcctcatagttatatgaatataaaggatggggt |
392 |
Q |
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| T |
8968127 |
tacctagatgtgtatatgtctcctcagaattatatgaatataaaggttggggt |
8968075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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