View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3049_low_20 (Length: 301)
Name: NF3049_low_20
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 32229778 - 32229493
Alignment:
| Q |
1 |
ttctatatcatcaaaatagaatggtagttttcatatacgttttgatggttttaaacttgtgaaacttcaagcattgtcgaaaaaactcannnnnnncctt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
32229778 |
ttctatatcatcaaaatagaatggtagttttcatatacgttttgatggttttaaacttgtgaaacttcaagcattgtcgaaaaaactcattttttt--tt |
32229681 |
T |
|
| Q |
101 |
cttgtatttcttaatcttcaacaaatttaagtcacatagatcacattttctctaaaacacaacaagtacgtgtcttaatctttcaatttatcatatttga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32229680 |
cttgtatttcttaatcttcaacaaatttaagtcacatagatcacattttctctaaaacacaacaagtacgtgtcttaatctttcaatttatcatatttga |
32229581 |
T |
|
| Q |
201 |
atattcaagttgtgtatgttgttgattaatttgatattgttcagggtttgttgatggtacatgaatgattaattgtttgtttctttgt |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32229580 |
atattcaagttgtgtatgttgttgattaatttgatattgttcagggtttgttgatggtacatgaatgattaattgtttgtttctttgt |
32229493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University