View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3049_low_22 (Length: 278)

Name: NF3049_low_22
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3049_low_22
NF3049_low_22
[»] chr7 (17 HSPs)
chr7 (96-265)||(35939447-35939622)
chr7 (38-265)||(36221333-36221566)
chr7 (74-211)||(35982182-35982319)
chr7 (74-211)||(36003594-36003731)
chr7 (83-265)||(36226001-36226189)
chr7 (81-258)||(35958112-35958295)
chr7 (120-241)||(36217436-36217557)
chr7 (94-258)||(35946907-35947077)
chr7 (118-252)||(35955167-35955301)
chr7 (116-252)||(35977573-35977709)
chr7 (116-252)||(35998985-35999121)
chr7 (14-145)||(35973540-35973677)
chr7 (14-145)||(35994952-35995089)
chr7 (140-225)||(35965653-35965738)
chr7 (121-210)||(29602916-29603005)
chr7 (121-210)||(29750289-29750378)
chr7 (139-210)||(29743270-29743341)
[»] chr1 (2 HSPs)
chr1 (10-252)||(18125826-18126074)
chr1 (159-256)||(18118178-18118275)
[»] chr4 (2 HSPs)
chr4 (139-252)||(49340545-49340658)
chr4 (139-252)||(49351909-49352022)
[»] chr5 (1 HSPs)
chr5 (139-210)||(32784295-32784366)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 9e-79; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 9e-79
Query Start/End: Original strand, 96 - 265
Target Start/End: Complemental strand, 35939622 - 35939447
Alignment:
Q  96 tgatgcaaccacatcctcacggtgatggtgat------aaaagtttatgtgttattcccattgtgggaattggaggattagggaagaccacacttgcaaa 189  Q
    ||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35939622 tgatgcaaccacatcctcacggtgatggtgatggtgataaaagtttatgtgttattcccattgtgggaattggaggattagggaagaccacacttgcaaa 35939523  T
Q  190 gttggtgttcaatgataagagggtgaatcaacttttccaattgaagatgtggctgtgtgtctccaatgagtttgat 265  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  35939522 gttggtgttcaatgataagagggtgaatcaacttttccaattgaagatgtggttgtgtgtctccaatgagtttgat 35939447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 38 - 265
Target Start/End: Original strand, 36221333 - 36221566
Alignment:
Q  38 gttgacgcttcaagtgtaatcgggagagagtgtgacagggaagaaattatcaagcgtttgatgcaaccacatcctcacggtgatggtgat------aaaa 131  Q
    ||||| ||||||||||| || ||||| |||  ||||||||||||||||||||| | |||||||||||| |||||||| || ||||| |||      ||||    
T  36221333 gttgatgcttcaagtgttattgggagggagaatgacagggaagaaattatcaaacttttgatgcaaccgcatcctcatggagatggagatggtgacaaaa 36221432  T
Q  132 gtttatgtgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtgaatcaacttttccaatt 231  Q
     ||| |||||||||||||| || |||||||| || || ||||||||||||||||||| |||||||||||||||||||||| |  || |  ||||||||||    
T  36221433 atttgtgtgttattcccatagttggaattggtggcttggggaagaccacacttgcaaggttggtgttcaatgataagaggatagatgatattttccaatt 36221532  T
Q  232 gaagatgtggctgtgtgtctccaatgagtttgat 265  Q
    |||||| ||| |||||||||||||||| ||||||    
T  36221533 gaagatttgggtgtgtgtctccaatgattttgat 36221566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 35982319 - 35982182
Alignment:
Q  74 agggaagaaattatcaagcgtttgatgcaaccacatcctcacggtgatggtgataaaagtttatgtgttattcccattgtgggaattggaggattaggga 173  Q
    ||||| ||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || || |    
T  35982319 agggatgaaattatcaagcttttgatgctaccacatcctcaaggtgatggtgataaaagcttatgtgttattcccattgtgggaattggaggtttgggaa 35982220  T
Q  174 agaccacacttgcaaagttggtgttcaatgataagagg 211  Q
    |||| ||||||||||| ||||| ||||||||| |||||    
T  35982219 agactacacttgcaaaattggttttcaatgatgagagg 35982182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 74 - 211
Target Start/End: Complemental strand, 36003731 - 36003594
Alignment:
Q  74 agggaagaaattatcaagcgtttgatgcaaccacatcctcacggtgatggtgataaaagtttatgtgttattcccattgtgggaattggaggattaggga 173  Q
    ||||| ||||||||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| || || |    
T  36003731 agggatgaaattatcaagcttttgatgctaccacatcctcaaggtgatggtgataaaagcttatgtgttattcccattgtgggaattggaggtttgggaa 36003632  T
Q  174 agaccacacttgcaaagttggtgttcaatgataagagg 211  Q
    |||| ||||||||||| ||||| ||||||||| |||||    
T  36003631 agactacacttgcaaaattggttttcaatgatgagagg 36003594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 83 - 265
Target Start/End: Complemental strand, 36226189 - 36226001
Alignment:
Q  83 attatcaagcgtttgatgcaaccacatcctcacggtgatg------gtgataaaagtttatgtgttattcccattgtgggaattggaggattagggaaga 176  Q
    |||||||||| ||||||||| ||||||||||| |||||||      ||||||||||||| |||||||||||||| ||||||||||| || || |||||||    
T  36226189 attatcaagcttttgatgcagccacatcctcaaggtgatgctgatggtgataaaagtttgtgtgttattcccatagtgggaattggtggcttggggaaga 36226090  T
Q  177 ccacacttgcaaagttggtgttcaatgataagagggtgaatcaacttttccaattgaagatgtggctgtgtgtctccaatgagtttgat 265  Q
    ||||||||||||| ||||||||||| |||||||||||  || | ||||||||||||||||||||| ||||| ||||  |||| ||||||    
T  36226089 ccacacttgcaaaattggtgttcaacgataagagggttgatgatcttttccaattgaagatgtgggtgtgtatctctgatgattttgat 36226001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 81 - 258
Target Start/End: Complemental strand, 35958295 - 35958112
Alignment:
Q  81 aaattatcaagcgtttgatgcaaccacatcctcacgg------tgatggtgataaaagtttatgtgttattcccattgtgggaattggaggattagggaa 174  Q
    |||||||||| | ||||||||| |||||||||| |||      |||||||||||| ||| | ||||| ||||| || |||||||||||||| || || ||    
T  35958295 aaattatcaatcttttgatgcagccacatcctcgcggagatggtgatggtgataatagtctctgtgtcattccaatagtgggaattggaggtttgggaaa 35958196  T
Q  175 gaccacacttgcaaagttggtgttcaatgataagagggtgaatcaacttttccaattgaagatgtggctgtgtgtctccaatga 258  Q
    ||| ||||||||||||| ||||||||||||||||||| || ||||||||||||| |||||||||||| ||||| ||||| ||||    
T  35958195 gacaacacttgcaaagtcggtgttcaatgataagaggatggatcaacttttccagttgaagatgtgggtgtgtatctccgatga 35958112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 120 - 241
Target Start/End: Original strand, 36217436 - 36217557
Alignment:
Q  120 atggtgataaaagtttatgtgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtgaatca 219  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||||| |  || |    
T  36217436 atggtcatagaagtttatgtgttattcccatagtgggaattggaggattggggaagaccacacttgcaaaattggtgtacaatgataagaggatagatga 36217535  T
Q  220 acttttccaattgaagatgtgg 241  Q
    | |||| |||||||||||||||    
T  36217536 agtttttcaattgaagatgtgg 36217557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 94 - 258
Target Start/End: Complemental strand, 35947077 - 35946907
Alignment:
Q  94 tttgatgcaaccacatcctcacgg------tgatggtgataaaagtttatgtgttattcccattgtgggaattggaggattagggaagaccacacttgca 187  Q
    ||||||||| ||||||||||||||      |||||||||||| ||| | ||||| ||||| || |||||||||||||| ||  ||||||||||||||||     
T  35947077 tttgatgcagccacatcctcacggcgatggtgatggtgataatagtctctgtgtcattccaatagtgggaattggaggtttgtggaagaccacacttgcg 35946978  T
Q  188 aagttggtgttcaatgataagagggtgaatcaacttttccaattgaagatgtggctgtgtgtctccaatga 258  Q
    |||| ||||||||||||||||||| |  ||||||||||||| |||||||||||| ||||| ||||| ||||    
T  35946977 aagtcggtgttcaatgataagaggatacatcaacttttccagttgaagatgtgggtgtgtatctccgatga 35946907  T

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Target: chr7; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 118 - 252
Target Start/End: Complemental strand, 35955301 - 35955167
Alignment:
Q  118 tgatggtgataaaagtttatgtgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtgaat 217  Q
    |||||| ||||||||||| ||||||||||||||  | || ||||||||||| || |||||||||||||||||||| |||||||||||| | |||||| ||    
T  35955301 tgatggagataaaagtttgtgtgttattcccataataggtattggaggattgggaaagaccacacttgcaaagttagtgttcaatgatgaaagggtggat 35955202  T
Q  218 caacttttccaattgaagatgtggctgtgtgtctc 252  Q
    ||| ||||| |||||||||||||| ||| ||||||    
T  35955201 caaattttcaaattgaagatgtgggtgtttgtctc 35955167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 252
Target Start/End: Complemental strand, 35977709 - 35977573
Alignment:
Q  116 ggtgatggtgataaaagtttatgtgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtga 215  Q
    |||| ||||||||| ||| | ||||| ||||| || |||||||||||||| || |||||||||||  ||||||||| ||||||||||||||||||| ||     
T  35977709 ggtggtggtgataatagtctttgtgtcattccaatagtgggaattggaggtttggggaagaccaccattgcaaagtcggtgttcaatgataagaggatgg 35977610  T
Q  216 atcaacttttccaattgaagatgtggctgtgtgtctc 252  Q
    ||||||||||||| |||||||||||| ||||| ||||    
T  35977609 atcaacttttccagttgaagatgtgggtgtgtatctc 35977573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 116 - 252
Target Start/End: Complemental strand, 35999121 - 35998985
Alignment:
Q  116 ggtgatggtgataaaagtttatgtgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtga 215  Q
    |||| ||||||||| ||| | ||||| ||||| || |||||||||||||| || |||||||||||  ||||||||| ||||||||||||||||||| ||     
T  35999121 ggtggtggtgataatagtctttgtgtcattccaatagtgggaattggaggtttggggaagaccaccattgcaaagtcggtgttcaatgataagaggatgg 35999022  T
Q  216 atcaacttttccaattgaagatgtggctgtgtgtctc 252  Q
    ||||||||||||| |||||||||||| ||||| ||||    
T  35999021 atcaacttttccagttgaagatgtgggtgtgtatctc 35998985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 35973677 - 35973540
Alignment:
Q  14 aggagagaaatgacttatcccaatgttgacgcttcaagtgtaatcgggagagagtgtgacagggaagaaattatcaagcgtttgatgcaaccacatcctc 113  Q
    ||||||||| ||||| || || |||| || ||||||||||| || ||||| |||  ||| ||||||||||||||||||| | |||||||||||| |||||    
T  35973677 aggagagaattgactaattcccatgtcgatgcttcaagtgttattgggagggagaatgatagggaagaaattatcaagcttctgatgcaaccacgtcctc 35973578  T
Q  114 acggtgat------ggtgataaaagtttatgtgttatt 145  Q
    | ||||||      |||||||||||||| |||||||||    
T  35973577 aaggtgatggagacggtgataaaagtttgtgtgttatt 35973540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 14 - 145
Target Start/End: Complemental strand, 35995089 - 35994952
Alignment:
Q  14 aggagagaaatgacttatcccaatgttgacgcttcaagtgtaatcgggagagagtgtgacagggaagaaattatcaagcgtttgatgcaaccacatcctc 113  Q
    ||||||||| ||||| || || |||| || ||||||||||| || ||||| |||  ||| ||||||||||||||||||| | |||||||||||| |||||    
T  35995089 aggagagaattgactaattcccatgtcgatgcttcaagtgttattgggagggagaatgatagggaagaaattatcaagcttctgatgcaaccacgtcctc 35994990  T
Q  114 acggtgat------ggtgataaaagtttatgtgttatt 145  Q
    | ||||||      |||||||||||||| |||||||||    
T  35994989 aaggtgatggagacggtgataaaagtttgtgtgttatt 35994952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 35965738 - 35965653
Alignment:
Q  140 gttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtgaatcaactttt 225  Q
    |||||||||||  | |||||||| || || |||||||||||||||||||| ||||||||||||||||||| |||| ||| ||||||    
T  35965738 gttattcccatactaggaattggtggcttggggaagaccacacttgcaaacttggtgttcaatgataagatggtggatcgactttt 35965653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 121 - 210
Target Start/End: Complemental strand, 29603005 - 29602916
Alignment:
Q  121 tggtgataaaagtttatgtgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagag 210  Q
    |||| |||||||| | | ||||||||| ||||| ||||||||||| || || ||||| ||||||||||||  ||||||||||||||||||    
T  29603005 tggtcataaaagtctctctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttcaatgataagag 29602916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 121 - 210
Target Start/End: Original strand, 29750289 - 29750378
Alignment:
Q  121 tggtgataaaagtttatgtgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagag 210  Q
    |||| |||||||| | | ||||||||| ||||| ||||||||||| || || ||||| ||||||||||||  ||||||||||||||||||    
T  29750289 tggtcataaaagtctctctgttattcctattgttggaattggaggcttgggaaagactacacttgcaaagacggtgttcaatgataagag 29750378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 29743270 - 29743341
Alignment:
Q  139 tgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagag 210  Q
    ||||||||| ||||| ||||||||||| || || ||||| || |||||||||   |||||||||||||||||    
T  29743270 tgttattcctattgttggaattggaggcttgggaaagactacgcttgcaaagacagtgttcaatgataagag 29743341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 10 - 252
Target Start/End: Complemental strand, 18126074 - 18125826
Alignment:
Q  10 gcaaaggagagaaatgacttatcccaatgttgacgcttcaagtgtaatcgggagagagtgtgacagggaagaaattatcaagcgtttgatgcaaccacat 109  Q
    ||||| ||| ||||||||||||||  ||||||| ||||  |||||||| || |||||| |||| |||||||| |||||||||| |||||||||| |||||    
T  18126074 gcaaaagagggaaatgacttatcctgatgttgatgctttgagtgtaataggaagagagagtgatagggaagagattatcaagcttttgatgcaagcacat 18125975  T
Q  110 cctcacggtgatggtgat------aaaagtttatgtgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatg 203  Q
    ||||| ||||||||||||      |||||| ||| |||||||||||| ||||||||||| || || |||||||||||| | |||||| | || |||||||    
T  18125974 cctcatggtgatggtgatggtgataaaagtctatctgttattcccatggtgggaattggtggcttggggaagaccacattggcaaagcttgttttcaatg 18125875  T
Q  204 ataagagggtgaatcaacttttccaattgaagatgtggctgtgtgtctc 252  Q
    |||||||  |  || |||| || ||||||||||||||| ||||||||||    
T  18125874 ataagagaatagatgaactctttcaattgaagatgtgggtgtgtgtctc 18125826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 159 - 256
Target Start/End: Complemental strand, 18118275 - 18118178
Alignment:
Q  159 ttggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtgaatcaacttttccaattgaagatgtggctgtgtgtctccaat 256  Q
    |||||||||| |||||||||||||||||||||||||| ||||| ||||||||| |  || || |||| ||||||||||||||  | ||||||||||||    
T  18118275 ttggaggattggggaagaccacacttgcaaagttggtattcaacgataagaggatcgatgaattttttcaattgaagatgtgagtctgtgtctccaat 18118178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 49340545 - 49340658
Alignment:
Q  139 tgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtgaatca-acttttccaattgaagat 237  Q
    ||||||||| ||||| ||||||||||||||||| || || |||||||||||| | ||||| |||||||||||  |  || | |||||||| |||||||||    
T  49340545 tgttattcctattgttggaattggaggattaggaaaaactacacttgcaaaggtcgtgtttaatgataagagtttagatgagacttttcc-attgaagat 49340643  T
Q  238 gtggctgtgtgtctc 252  Q
    |||| ||||||||||    
T  49340644 gtgggtgtgtgtctc 49340658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 49351909 - 49352022
Alignment:
Q  139 tgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagagggtgaatca-acttttccaattgaagat 237  Q
    |||||||||  |||| ||||||||||||||||| ||||| ||||||||||||   ||||| |||||||||||  |  || | |||||||| |||||||||    
T  49351909 tgttattcctgttgttggaattggaggattaggaaagactacacttgcaaaggcagtgtttaatgataagagtttagatgagacttttcc-attgaagat 49352007  T
Q  238 gtggctgtgtgtctc 252  Q
    |||| ||||||||||    
T  49352008 gtgggtgtgtgtctc 49352022  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 139 - 210
Target Start/End: Complemental strand, 32784366 - 32784295
Alignment:
Q  139 tgttattcccattgtgggaattggaggattagggaagaccacacttgcaaagttggtgttcaatgataagag 210  Q
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T  32784366 tgttattcctattgttggaattggaggattaggaaaaactacactttcaaaggcagtgtttaatgataagag 32784295  T

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