View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_25 (Length: 254)
Name: NF3049_low_25
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 53 - 239
Target Start/End: Original strand, 5978008 - 5978194
Alignment:
| Q |
53 |
cttagcatatgccatgccactgccaccacgcacgttctcctcattcctagctgttatgtcccattcatgcactccagcataccaattttaatgtcataaa |
152 |
Q |
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| T |
5978008 |
cttagcatatgccatgccactgccaccacgcacgttctcctcattcctagctgttatgtcccattcatgcactccagcataccaattttaatgtcataaa |
5978107 |
T |
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| Q |
153 |
ttattgtcactttcataaacattatttttgaatatgaatgtaacatcaaattaccaagatttcaagatcatagttgatagttaaatc |
239 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
5978108 |
ttattgtcactttcataaacattatttttgaatatgaatgtaacatcaaattactaagatttcaagatcatagttgatagttcaatc |
5978194 |
T |
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