View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_27 (Length: 248)
Name: NF3049_low_27
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_27 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 248
Target Start/End: Complemental strand, 8691227 - 8690997
Alignment:
| Q |
18 |
aaaagtttaaacattgttgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccaggaacac |
117 |
Q |
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| T |
8691227 |
aaaagtttaaacattgttgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccaggaacac |
8691128 |
T |
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| Q |
118 |
aaccattatagaacacaagtgttttctttatcccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagtatccaca |
217 |
Q |
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| T |
8691127 |
aaccattatagaacacaagtgttttttttatcccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttccagtatccaca |
8691028 |
T |
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| Q |
218 |
ctgtgtccttctgttaaaccttttactattt |
248 |
Q |
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| T |
8691027 |
ctgtgtccttctgttaaaccttttactattt |
8690997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 14372237 - 14372392
Alignment:
| Q |
34 |
ttgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccaggaacacaaccattatagaacac |
133 |
Q |
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| T |
14372237 |
ttgtaacaaaacaaacctggt-atcttcaaaggtggtatcatgatattcatgaatcacccggctgcttttaacaccaggaacacgaccattatagtaaac |
14372335 |
T |
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| Q |
134 |
aagtgttttctttatcccaataacattgtcagtgcctctaaccttaatcttacggtc |
190 |
Q |
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| T |
14372336 |
aagagttttcttaatcccaataatattattgctacccctaaccttaatcttccggtc |
14372392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 34 - 208
Target Start/End: Complemental strand, 8705491 - 8705317
Alignment:
| Q |
34 |
ttgtaacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccaggaacacaaccattatagaacac |
133 |
Q |
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| T |
8705491 |
ttgtaacaaaacaaaccttgtcatcttcaaaggtggtatcatgatattcatgaatcacccagctgcttttaacaccaggaacacgaccattgtagtaaac |
8705392 |
T |
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| Q |
134 |
aagtgttttctttatcccaataacattgtcagtgcctctaaccttaatcttacggtcaagaccagtggctttcca |
208 |
Q |
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| T |
8705391 |
aagagtcttcttaatcccaataatattattgctacccctaaccttaatcttccggtccttaccagtagctttcca |
8705317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 38 - 116
Target Start/End: Complemental strand, 8740563 - 8740485
Alignment:
| Q |
38 |
aacaaaacaaacctggttatcatgaaaggtggcagaatgatattcatgaatcacccagttgcttttaacaccaggaaca |
116 |
Q |
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| T |
8740563 |
aacataacaaacctggtgatcatcaaagatggcatcatgatattcatgaatgatccaattagtcttaacaccaggaaca |
8740485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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