View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3049_low_28 (Length: 243)

Name: NF3049_low_28
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3049_low_28
NF3049_low_28
[»] chr1 (5 HSPs)
chr1 (13-218)||(29207701-29207912)
chr1 (152-218)||(30004657-30004727)
chr1 (157-218)||(48722120-48722185)
chr1 (152-218)||(51109848-51109918)
chr1 (158-218)||(20905041-20905105)
[»] chr8 (5 HSPs)
chr8 (150-218)||(3445777-3445849)
chr8 (150-218)||(44664351-44664423)
chr8 (152-218)||(27074718-27074788)
chr8 (150-218)||(13585550-13585622)
chr8 (157-218)||(1004302-1004367)
[»] chr5 (2 HSPs)
chr5 (152-218)||(36718378-36718448)
chr5 (157-218)||(12661552-12661617)
[»] chr3 (7 HSPs)
chr3 (152-218)||(13401702-13401772)
chr3 (157-218)||(46791451-46791514)
chr3 (157-218)||(52654877-52654942)
chr3 (150-218)||(6715683-6715755)
chr3 (181-218)||(8364417-8364454)
chr3 (157-218)||(25598837-25598902)
chr3 (152-213)||(28132484-28132549)
[»] chr4 (2 HSPs)
chr4 (153-218)||(32130540-32130609)
chr4 (152-218)||(53011959-53012029)
[»] chr2 (4 HSPs)
chr2 (180-218)||(42759537-42759575)
chr2 (152-218)||(2064049-2064119)
chr2 (152-214)||(42411306-42411370)
chr2 (152-218)||(41096289-41096359)
[»] chr7 (1 HSPs)
chr7 (152-218)||(33910309-33910379)
[»] chr6 (1 HSPs)
chr6 (152-214)||(6361011-6361077)


Alignment Details
Target: chr1 (Bit Score: 172; Significance: 1e-92; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 13 - 218
Target Start/End: Original strand, 29207701 - 29207912
Alignment:
Q  13 aataacaattatgttgggtttttattttgacggaaatatgtgatgtacttttttaatactagaaatatgtgaagtattaagcaattaaattttgtgaaat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29207701 aataacaattatgttgggtttttattttgacggaaatatgtgatgtacttttttaatactagaaatatgtgaagtattaagcaattaaattttgtgaaat 29207800  T
Q  113 gtacac--agaattgaaataacacaacctatccgtaaccatcaggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaa 206  Q
    ||||||  ||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||    ||||||||||||||||||||||||||    
T  29207801 gtacacaaagaattgaaataacacaacttatccgtaaccatcaggaccgttcctgtgaaataggaggctcgactctctttctaaaataggtccatagtaa 29207900  T
Q  207 aataaaacgtaa 218  Q
    ||||||||||||    
T  29207901 aataaaacgtaa 29207912  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 30004657 - 30004727
Alignment:
Q  152 caggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    ||||||||||| |||||||||||||||||    |||||| ||||||||| |||||||||||||||||||||    
T  30004657 caggaccgtccatgtaaaataggaggctcggctctctttttaaaataggcccatagtaaaataaaacgtaa 30004727  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 48722120 - 48722185
Alignment:
Q  157 ccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||||| ||| |||||||||||||    |||||| |||||||||||||||||||||||||||||||    
T  48722120 ccgtccgtgtgaaataggaggctcgactctctttttaaaataggtccatagtaaaataaaacgtaa 48722185  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 51109848 - 51109918
Alignment:
Q  152 caggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||| |||||||||| |||||||||||||    |||||| ||||||||| || ||||||||||||||||||    
T  51109848 cagggccgtccctgtgaaataggaggctcggctctctttttaaaataggcccctagtaaaataaaacgtaa 51109918  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 218
Target Start/End: Original strand, 20905041 - 20905105
Alignment:
Q  158 cgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    ||||||||| |||||||||||||    |||||| |||||||||||| |||||| |||||||||||    
T  20905041 cgtccctgtgaaataggaggctcgactctctttttaaaataggtccctagtaagataaaacgtaa 20905105  T

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Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 3445849 - 3445777
Alignment:
Q  150 atcaggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    ||||||||||||||||| |||||||||||||    |||||| ||||||||| || ||||||||||||||||||    
T  3445849 atcaggaccgtccctgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaacgtaa 3445777  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 150 - 218
Target Start/End: Original strand, 44664351 - 44664423
Alignment:
Q  150 atcaggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||||||| |||||||| ||||||| |||||    |||||| |||||||||||| ||||||||||||||||||    
T  44664351 atcaggactgtccctgtgaaataggtggctcggctctctttttaaaataggtccctagtaaaataaaacgtaa 44664423  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 27074788 - 27074718
Alignment:
Q  152 caggaccgtccctgtaaaataggaggctcc----tctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    ||||||||||| ||| ||||| |||||||     ||||| |||||||||||||||||||||||||||||||    
T  27074788 caggaccgtccttgtgaaatatgaggctcggctatctttttaaaataggtccatagtaaaataaaacgtaa 27074718  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 13585622 - 13585550
Alignment:
Q  150 atcaggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||||| |||||||||| |||||||||||||    |||||| ||||||||| || ||||||||||||| ||||    
T  13585622 atcagggccgtccctgtgaaataggaggctcgactctctttttaaaataggcccctagtaaaataaaatgtaa 13585550  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 1004367 - 1004302
Alignment:
Q  157 ccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    ||||||| || |||||||||||||    || ||| |||||||| ||||||||||||||||||||||    
T  1004367 ccgtccccgtgaaataggaggctcgactctttttttaaaatagatccatagtaaaataaaacgtaa 1004302  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 36718378 - 36718448
Alignment:
Q  152 caggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||| ||||| ||||||||||||||||||    |||||| |||||||| ||||||||||||||||||||||    
T  36718378 cagggccgtctctgtaaaataggaggctcaactctctttttaaaatagatccatagtaaaataaaacgtaa 36718448  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Complemental strand, 12661617 - 12661552
Alignment:
Q  157 ccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||||||||| |||| ||||||||    |||||| |||||||||||  ||||||||||||||||||    
T  12661617 ccgtccctgtgaaatgggaggctcggctctctttttaaaataggtctttagtaaaataaaacgtaa 12661552  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 13401772 - 13401702
Alignment:
Q  152 caggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||| ||||||||||||||||||||||||    |||||| |||||||||||| ||||||||||||| ||||    
T  13401772 cagggccgtccctgtaaaataggaggctcgactctctttttaaaataggtccttagtaaaataaaatgtaa 13401702  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 46791451 - 46791514
Alignment:
Q  157 ccgtccctgtaaaataggaggctc--ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||||||||| |||||||||||||  |||| | ||||||||| || ||||||||||||||||||    
T  46791451 ccgtccctgtgaaataggaggctcggctctctttaaaataggcccctagtaaaataaaacgtaa 46791514  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 52654877 - 52654942
Alignment:
Q  157 ccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||| ||||| |||||||||||||    |||||| |||||||||||| ||||||||||||||||||    
T  52654877 ccgttcctgtgaaataggaggctcaactctctttttaaaataggtccctagtaaaataaaacgtaa 52654942  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 218
Target Start/End: Complemental strand, 6715755 - 6715683
Alignment:
Q  150 atcaggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||||| ||||||| || |||||||||||||    |||||| |||||||| ||| ||||||||||||||||||    
T  6715755 atcagggccgtccccgtgaaataggaggctcggctctctttttaaaatagatccttagtaaaataaaacgtaa 6715683  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 181 - 218
Target Start/End: Complemental strand, 8364454 - 8364417
Alignment:
Q  181 ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  8364454 ctctttttaaaataggcccatagtaaaataaaacgtaa 8364417  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 157 - 218
Target Start/End: Original strand, 25598837 - 25598902
Alignment:
Q  157 ccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||| ||| |||||||||||||||    |||||| |||||||||||  ||||||||||||||||||    
T  25598837 ccgttcctataaaataggaggctcggctctctttttaaaataggtctttagtaaaataaaacgtaa 25598902  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 28132484 - 28132549
Alignment:
Q  152 caggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaa 213  Q
    |||| |||||||||| |||||||||||||    |||||| ||||||||| || |||||||||||||    
T  28132484 cagggccgtccctgtgaaataggaggctcggctctctttttaaaataggcccctagtaaaataaaa 28132549  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 153 - 218
Target Start/End: Original strand, 32130540 - 32130609
Alignment:
Q  153 aggaccgtccctgtaaaataggaggctc--ctctt--tctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||||||||||||| |||||||||||||  |||||  | |||||||||||| ||||||||||||||||||    
T  32130540 aggaccgtccctgtgaaataggaggctcggctcttcttttaaaataggtccttagtaaaataaaacgtaa 32130609  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 53012029 - 53011959
Alignment:
Q  152 caggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||| |||| ||||| |||||||||||||    |||||| |||||||||  ||||||||||||||||||||    
T  53012029 cagggccgttcctgtgaaataggaggctcggctctctttttaaaataggctcatagtaaaataaaacgtaa 53011959  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 180 - 218
Target Start/End: Original strand, 42759537 - 42759575
Alignment:
Q  180 cctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  42759537 cctctttttaaaataggtccatagtaaaataaaacgtaa 42759575  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 2064119 - 2064049
Alignment:
Q  152 caggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||| |||| ||||| |||||||||||||    |||||| |||||||||||| ||||||||||||||||||    
T  2064119 cagggccgttcctgtgaaataggaggctcaactctctttttaaaataggtccgtagtaaaataaaacgtaa 2064049  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 42411306 - 42411370
Alignment:
Q  152 caggaccgtccctgtaaaataggaggctc--ctctttctaaaataggtccatagtaaaataaaac 214  Q
    ||||||||||||||| |||||||||| ||  |||||| |||||||||  ||||||||||||||||    
T  42411306 caggaccgtccctgtgaaataggaggttcgactctttttaaaataggctcatagtaaaataaaac 42411370  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 218
Target Start/End: Original strand, 41096289 - 41096359
Alignment:
Q  152 caggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||| |||||||||| |||||||||||||    |||||| ||||||||  || ||||||||||||||||||    
T  41096289 cagggccgtccctgtgaaataggaggctcggctctctttttaaaatagacccctagtaaaataaaacgtaa 41096359  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 33910379 - 33910309
Alignment:
Q  152 caggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaacgtaa 218  Q
    |||| |||||||||| |||||||||||||    |||||| ||||||||| || ||||||||||||||||||    
T  33910379 cagggccgtccctgtgaaataggaggctcggctctctttttaaaataggcccctagtaaaataaaacgtaa 33910309  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 152 - 214
Target Start/End: Complemental strand, 6361077 - 6361011
Alignment:
Q  152 caggaccgtccctgtaaaataggaggctc----ctctttctaaaataggtccatagtaaaataaaac 214  Q
    ||||||| ||||||| |||||| ||||||    |||||| |||||||||||| ||||||||||||||    
T  6361077 caggaccatccctgtgaaatagaaggctcggctctctttttaaaataggtccctagtaaaataaaac 6361011  T

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