View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_33 (Length: 230)
Name: NF3049_low_33
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_33 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 8031587 - 8031780
Alignment:
| Q |
1 |
acaaattgaaaattggcttccaattaactctcaaaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgttctt |
100 |
Q |
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|||||||||| | ||||||||| ||| ||| |||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
8031587 |
acaaattgaagactggcttccagttagttctgaaaggaatgcaaaatggtggtattcttctttccacaatgtcactgcaatggttggagctggtgttctt |
8031686 |
T |
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| Q |
101 |
ggtctccccttttccatggctgatcttggatggtatatttcaaaccctaattacacttg-caagaaatattctccaaaataaaataagatacaa |
193 |
Q |
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| T |
8031687 |
ggtctccccttttccatggcatatcttggatggtatatttcaaaccctaattacacttgtcatgaagtattctctaacataaaataagaaacaa |
8031780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 186
Target Start/End: Original strand, 8040971 - 8041141
Alignment:
| Q |
17 |
cttccaattaactctcaaaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgttcttggtctccccttttcca |
116 |
Q |
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| T |
8040971 |
cttccaagtaattctggaaggaatgcaaaatggtggtactcgactttccacaatgtcactgccatggttggagctggtgttcttggtctccccttttcca |
8041070 |
T |
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| Q |
117 |
tggctgatcttggatggtatatttcaaaccctaattacac-ttgcaagaaatattctccaaaataaaataa |
186 |
Q |
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| T |
8041071 |
tggcagctcttggatggtatatttcaaaccctaattacacgcaccatgaaatattctctaaaataaaataa |
8041141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 7973070 - 7972929
Alignment:
| Q |
17 |
cttccaattaactctcaaaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgttcttggtctccccttttcca |
116 |
Q |
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| T |
7973070 |
cttccaagtaattctggaaggaatgcaaaatggtggtactcgactttccacaatgtcactgccatggttggagctggtgttcttggtctcccctttgcca |
7972971 |
T |
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| Q |
117 |
tggctgatcttggatggtatatttcaaaccctaattacactt |
158 |
Q |
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| T |
7972970 |
tggcagctcttggatggtatatttcaaaccctaattacactt |
7972929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 14 - 143
Target Start/End: Complemental strand, 7980118 - 7979989
Alignment:
| Q |
14 |
tggcttccaattaactctcaaaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgttcttggtctcccctttt |
113 |
Q |
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||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
7980118 |
tggcttccaattacatctaaaaggaatgcaaaatggtggtactcagcttttcacaatgtcactgccatggttggagctggtgttcttggtctccctcatg |
7980019 |
T |
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| Q |
114 |
ccatggctgatcttggatggtatatttcaa |
143 |
Q |
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| T |
7980018 |
ccatggcacaacttggatggtatatttcaa |
7979989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0531 (Bit Score: 113; Significance: 2e-57; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 188
Target Start/End: Complemental strand, 4079 - 3892
Alignment:
| Q |
1 |
acaaattgaaaattggcttccaattaactctcaaaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgttctt |
100 |
Q |
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|||||||||| | ||||||||||||| ||| ||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
4079 |
acaaattgaagactggcttccaattagctcccaaaggaatgcaaaatggtggtattcttctttccacaatgtcactgcaatggttggagctggtgttctt |
3980 |
T |
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| Q |
101 |
ggtctccccttttccatggctgatcttggatggtatatttcaaaccctaattacactt-gcaagaaatattctccaaaataaaataaga |
188 |
Q |
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| T |
3979 |
ggcctcccctattccatggcagctcttggatggtata-ttcaaaccctaattacacttaccatgaaatagtctctaaaataaaataaga |
3892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 41383093 - 41382955
Alignment:
| Q |
20 |
ccaattaactctcaaaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgttcttggtctccccttttccatgg |
119 |
Q |
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|||| ||||||| |||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41383093 |
ccaaataactctgaaagaaatgcaaaatggtggtactctactttccacaatgtcactgccatggttggagctggtgttcttggtctccccttttccatgg |
41382994 |
T |
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| Q |
120 |
ctgatcttggatggtatatttcaaaccctaattacactt |
158 |
Q |
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| T |
41382993 |
cagcccttggatggtatattttaaacccaaattacactt |
41382955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 34 - 96
Target Start/End: Original strand, 43851784 - 43851846
Alignment:
| Q |
34 |
aaggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgt |
96 |
Q |
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| T |
43851784 |
aaggaatgcaaaatggtggtacgcagcttttcacaatgttactgccatggttggagctggtgt |
43851846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 14199215 - 14199113
Alignment:
| Q |
38 |
aatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttggagctggtgttcttggtctccccttttccatggctgatcttggatggtata |
137 |
Q |
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||||||||||||||||| ||| | || |||||||| ||||||||||||||||||||||||||| ||||||| | | |||||||| | ||||||||||||| |
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| T |
14199215 |
aatgcaaaatggtggtattctgcattccacaatgttactgccatggttggagctggtgttcttagtctcccttatgccatggctcaacttggatggtata |
14199116 |
T |
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| Q |
138 |
ttt |
140 |
Q |
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||| |
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| T |
14199115 |
ttt |
14199113 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 34408914 - 34408966
Alignment:
| Q |
35 |
aggaatgcaaaatggtggtactcttcttttcacaatgtcactgccatggttgg |
87 |
Q |
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||||| || ||||||||||||||| ||||||||||| |||| ||||||||||| |
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| T |
34408914 |
aggaaagccaaatggtggtactctgcttttcacaatatcacggccatggttgg |
34408966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 42986823 - 42986774
Alignment:
| Q |
53 |
tactcttcttttcacaatgtcactgccatggttggagctggtgttcttgg |
102 |
Q |
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| T |
42986823 |
tactctgcgtttcataatgtcactgccatggttggagctgcagttcttgg |
42986774 |
T |
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