View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_36 (Length: 220)
Name: NF3049_low_36
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 114; Significance: 6e-58; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 84 - 201
Target Start/End: Complemental strand, 5171217 - 5171100
Alignment:
| Q |
84 |
gtttgacgcttggtggaggggatgaaacttgatagaccacagggtccgatgcatcctacataattcaggtaaatgcacacaaatacaatacttaaatatt |
183 |
Q |
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| T |
5171217 |
gtttgacgcttggtggaggggatgaaacttgatagactacagggtccgatgcatcctacataattcaggtaaatgcacacaaatacaatacttaaatatt |
5171118 |
T |
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| Q |
184 |
cagaatgaatgaacgaat |
201 |
Q |
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| T |
5171117 |
cagaatgaatgaacgaat |
5171100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 183
Target Start/End: Complemental strand, 5204636 - 5204472
Alignment:
| Q |
20 |
agtaagatatttacagcagacgaaaacaaagtttccttttttggaaaggaacaaaggtgcaagtgtttgacgcttggtggaggggatgaaacttgataga |
119 |
Q |
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|||| |||||||||| |||||||||||||| |||| |||||||||| || | ||||||||||||||||| ||||||||| ||||||||||||||| ||| |
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| T |
5204636 |
agtatgatatttacaacagacgaaaacaaaatttcattttttggaacagagcgaaggtgcaagtgtttgatgcttggtggcggggatgaaacttgaaaga |
5204537 |
T |
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| Q |
120 |
ccacagggtccgatgcatcctacataattc-aggtaaatgcacacaaatacaatacttaaatatt |
183 |
Q |
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| T |
5204536 |
ccaatgggttcagtgcatcctacataatccaaagtaagtacacacaaatacaataaataaatatt |
5204472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 6231058 - 6230963
Alignment:
| Q |
20 |
agtaagatatttacagcagacgaaaacaaagtttccttttttggaaaggaacaaaggtgcaagtgtttgacgcttggtggaggggatgaaacttga |
115 |
Q |
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| T |
6231058 |
agtaagatatttacaatagatgaaaaaaaagtttcattttttggaacagagcgaaggtgcaagtgtttgatgcttggtggaggggatgacacttga |
6230963 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Complemental strand, 5171255 - 5171218
Alignment:
| Q |
17 |
gagagtaagatatttacagcagacgaaaacaaagtttc |
54 |
Q |
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| T |
5171255 |
gagagtaagatatttacagcagatgaaaacaaagtttc |
5171218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 5194364 - 5194269
Alignment:
| Q |
20 |
agtaagatatttacagcagacgaaaacaaagtttccttttttggaaaggaacaaaggtgcaagtgtttgacgcttggtggaggggatgaaacttga |
115 |
Q |
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| T |
5194364 |
agtaagatatttacaatagatgaaaacgtagtttcatttgttggaacatagagaaggtgcaagtgtttgatacttggtggaggggatgacacttga |
5194269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 8552200 - 8552295
Alignment:
| Q |
20 |
agtaagatatttacagcagacgaaaacaaagtttccttttttggaaaggaacaaaggtgcaagtgtttgacgcttggtggaggggatgaaacttga |
115 |
Q |
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| T |
8552200 |
agtaagatacttagaagagacgaatacaaagtttctttttttgggaaagtgtgtagatgcaagtgtttgacgcttggtggaggggatgaaacttga |
8552295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 37 - 115
Target Start/End: Complemental strand, 8306415 - 8306337
Alignment:
| Q |
37 |
agacgaaaacaaagtttccttttttggaaaggaacaaaggtgcaagtgtttgacgcttggtggaggggatgaaacttga |
115 |
Q |
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| T |
8306415 |
agacgaatacaaagttacattttttggaaaagagtgtagatgcaaatgtttgatgcttggtggaggggatgaaacttga |
8306337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 49611467 - 49611424
Alignment:
| Q |
77 |
tgcaagtgtttgacgcttggtggaggggatgaaacttgatagac |
120 |
Q |
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| T |
49611467 |
tgcaagtgtttaatgcttggtggaggggatgaaacttgaaagac |
49611424 |
T |
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