View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_4 (Length: 525)
Name: NF3049_low_4
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Complemental strand, 43131605 - 43131129
Alignment:
| Q |
16 |
caattttctccatgtttaactcattcatgttattcattatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaatactgcnnnn |
115 |
Q |
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| T |
43131605 |
caattttctccatgtttaactcattcatgttattcattatgttcttagcagagtccaattccttccagaatgaatcgtaacgatgaggaatactg----- |
43131511 |
T |
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| Q |
116 |
nnnnnnnnnnnntaacaagttcaataaatatttcctccgtctcattataagtgtctcattttagttgtacgtaattcattcatatatatatgcaacaaac |
215 |
Q |
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| T |
43131510 |
--taaaacaaaataacaagttcaatatatatttcctccgtctcatt--------------ttagttgtacgtaattcattcatatatat--gcaacaaac |
43131429 |
T |
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| Q |
216 |
ctggcaagtcgagtatagaacaattgtttggctagtgattggcacttttcaatagtaggtggttcttggacatagtgtttgttcctctccatcaacagct |
315 |
Q |
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| T |
43131428 |
ctggcaagtcgagtatagaacaattgtttggccagtgattgacacttttcaatagtaggtggttcttggacatggtgtttgttcctctccatcaacagct |
43131329 |
T |
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| Q |
316 |
tgaaatgtgaatttatatggtttgccacttctgctgatgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaat |
415 |
Q |
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| T |
43131328 |
tgaaatgtgaatttatatggtttgccacttctgctgatgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaat |
43131229 |
T |
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| Q |
416 |
tatattaagatatataaggttcaaaaatttattcaaatctcatcattctgtttttcttttaaatttccacacacaaaccttgctgtatgagtcacctttg |
515 |
Q |
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| T |
43131228 |
tatattaagatatatatgggtcaaaaatttattcaaatctcatcattctgtttttcttttaaatttccacacacaaaccttgttgtatgagtcacctttg |
43131129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 353 - 414
Target Start/End: Complemental strand, 43130508 - 43130447
Alignment:
| Q |
353 |
tgcttgagtcgcctttgattgcagctcaggaatctttgatgtcatggatttactatacaaaa |
414 |
Q |
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| T |
43130508 |
tgcttgagtcacctttaattgcagctgaggaatctttgaagtcattagttcactatacaaaa |
43130447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 149 - 185
Target Start/End: Original strand, 33931910 - 33931946
Alignment:
| Q |
149 |
cctccgtctcattataagtgtctcattttagttgtac |
185 |
Q |
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| T |
33931910 |
cctccgtttcattataagtgtctcatttgagttgtac |
33931946 |
T |
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