View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3049_low_5 (Length: 501)
Name: NF3049_low_5
Description: NF3049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3049_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Original strand, 54393030 - 54393514
Alignment:
| Q |
1 |
taacaagaaaaagatgaaaataccaaatcaagttcagcatcttcagccgttcgaattgcctgatcaagagatactactccaatcatattctgactctgat |
100 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
54393030 |
taacaagaaaaagatgaacataccaaatcaagttcagcatcttcagccattcgaattgcctgatcaagagatactactccaaccatattctgactctgat |
54393129 |
T |
|
| Q |
101 |
caataagtctaacggtattcgaactatttcaaaaatcgaaagtaacaccaccattaagcacaaaaattcgaaatagaaatgaaatggaatcaagtatgag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54393130 |
caataagtctaacggtattcgaactatttcaaaaatcgaaagtaacacaaccattaagcacaaaaattcgaaatagaaatgaaatggaatcaagtatgag |
54393229 |
T |
|
| Q |
201 |
ttagaatacgtacctaagtgtggagaggtcgagagcttgttcattgtcggcgtctttgtcaggaggaggtcttctgaagttgccaccgccaccgtaggcg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
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| T |
54393230 |
ttagaatacgtacctaagtgtggagaggtcgagagcttgtccatcgtcggcgtctttctcaggaggagctcttctgaagttgccaccgccaccgtaggcg |
54393329 |
T |
|
| Q |
301 |
gaaggacggaggttaacaccgtaacgaacggttgcgtgggaaggaagagtgaaagagggagaagattgtaaattgagggaatgaggaatagagagtttat |
400 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54393330 |
gaaggacggaggttaacaccataacgaacggttgcgtgggaaggaagagtgaaagagggagaagattgtaaattgagggaatgaggaatagagagtttat |
54393429 |
T |
|
| Q |
401 |
tagagaagaagtgcgaggctttgagtttaacgggaacaacggtggtggaggtaatgccagccatggcgttggtttacacactttc |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54393430 |
tagagaagaagtgcgaggctttgagtttaacgggaacaacggtggtggaggtaatgccagccatggcgttggtttacacactttc |
54393514 |
T |
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